RNA 3D Hub //

Equivalence class NR_20.0_97539.13 Current

#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodRes. Å#NTsDate
19B1Y|1|A (rep)Small subunit ribosomal RNA16S rRNAMycolicibacterium smegmatisBacteriaRF00177WT strain WT mycobacterial ribosomeElectron microscopy2.4715112025-03-26
29B24|1|ASmall subunit ribosomal RNARNA (1528-MER)Mycolicibacterium smegmatisBacteriaRF00177WT strain gidB mutant mycobacterial ribosomeElectron microscopy2.4715112025-03-26
38FR8|1|aSmall subunit ribosomal RNA16S rRNA (1511-MER)Mycolicibacterium smegmatis MC2 155BacteriaRF00177Structure of Mycobacterium smegmatis Rsh bound to a 70S translation initiation complexElectron microscopy2.7615112023-05-17
48WHX|1|aSmall subunit ribosomal RNA16S rRNAMycolicibacterium smegmatis MC2 155BacteriaRF00177Cryo- EM structure of Mycobacterium smegmatis 70S ribosome and RafH.Electron microscopy2.815152024-02-28
58WIF|1|aSmall subunit ribosomal RNA16S rRNAMycolicibacterium smegmatis MC2 155BacteriaRF00177Cryo- EM structure of Mycobacterium smegmatis 30S ribosomal subunit (body 2) of 70S ribosome and RafH.Electron microscopy2.915172024-02-28
68V9L|1|aSmall subunit ribosomal RNA16S Ribosomal RNAMycolicibacterium smegmatis MC2 155BacteriaRF00177Cryo-EM structure of the Mycobacterium smegmatis 70S ribosome in complex with hibernation factor Msmeg1130 (Balon) and MsmegEF-Tu(GDP) (Composite structure 6)Electron microscopy315112024-02-07
79B1X|1|ASmall subunit ribosomal RNA16S rRNAMycolicibacterium smegmatisBacteriaRF00177HWS19 strain gidB mutant mycobacterial ribosomeElectron microscopy3.0715112025-03-26
88V9K|1|aSmall subunit ribosomal RNA16S Ribosomal RNAMycolicibacterium smegmatis MC2 155BacteriaRF00177Cryo-EM structure of the Mycobacterium smegmatis 70S ribosome in complex with hibernation factor Rv2629 (Balon) (Structure 5)Electron microscopy3.115112024-02-07
98V9J|1|aSmall subunit ribosomal RNA16S Ribosomal RNAMycolicibacterium smegmatis MC2 155BacteriaRF00177Cryo-EM structure of the Mycobacterium smegmatis 70S ribosome in complex with hibernation factor Msmeg1130 (Balon) (Structure 4)Electron microscopy3.115112024-02-07
108VIO|1|aSmall subunit ribosomal RNA16S ribosomal RNAMycolicibacterium smegmatis MC2 155BacteriaRF00177Structure of Mycobacterium smegmatis HflX bound to a 70S ribosomeElectron microscopy3.2615112025-02-19
119B1W|1|ASmall subunit ribosomal RNA15S rRNAMycolicibacterium smegmatisBacteriaRF00177HWS19 strain WT mycobacterial ribosomeElectron microscopy3.2615112025-03-26
125O61|1|BASmall subunit ribosomal RNA16S rRNAMycobacterium smegmatisBacteriaRF00177The complete structure of the Mycobacterium smegmatis 70S ribosomeElectron microscopy3.3115112017-07-12
135ZEB|1|aSmall subunit ribosomal RNA16S rRNAMycolicibacterium smegmatisBacteriaRF00177M. Smegmatis P/P state 70S ribosome structureElectron microscopy3.415062018-09-26
145ZEP|1|aSmall subunit ribosomal RNA16S rRNAMycolicibacterium smegmatisBacteriaRF00177M. smegmatis hibernating state 70S ribosome structureElectron microscopy3.415062018-09-26
156DZI|1|hSmall subunit ribosomal RNA16S rRNAMycolicibacterium smegmatisBacteriaRF00177Cryo-EM Structure of Mycobacterium smegmatis 70S C(minus) ribosome 70S-MPY complexElectron microscopy3.4615112018-09-26
168WIB|1|aSmall subunit ribosomal RNA16S rRNAMycolicibacterium smegmatis MC2 155BacteriaRF00177Cryo- EM structure of Mycobacterium smegmatis 70S ribosome, E- tRNA and RafH.Electron microscopy3.515152024-02-28
178WID|1|aSmall subunit ribosomal RNA16S rRNAMycolicibacterium smegmatis MC2 155BacteriaRF00177Cryo- EM structure of Mycobacterium smegmatis 30S ribosomal subunit (body 2) of 70S ribosome, E- tRNA and RafH.Electron microscopy3.515152024-02-28
188WI9|1|aSmall subunit ribosomal RNA16S rRNAMycolicibacterium smegmatis MC2 155BacteriaRF00177Cryo- EM structure of Mycobacterium smegmatis 30S ribosomal subunit (body 2) of 70S ribosome, bS1 and RafH.Electron microscopy3.515152024-02-28
198WI7|1|aSmall subunit ribosomal RNA16S rRNAMycolicibacterium smegmatis MC2 155BacteriaRF00177Cryo- EM structure of Mycobacterium smegmatis 70S ribosome, bS1 and RafH.Electron microscopy3.515152024-02-28
209E0P|1|aSmall subunit ribosomal RNA16S rRNAMycolicibacterium smegmatisBacteriaRF00177M. smegmatis methylated 70S ribosome structureElectron microscopy3.1715062025-07-16
215O5J|1|ASmall subunit ribosomal RNA16S rRNAMycolicibacterium smegmatisBacteriaRF00177Structure of the 30S small ribosomal subunit from Mycobacterium smegmatisElectron microscopy3.4515112017-07-12
229E0N|1|aSmall subunit ribosomal RNA16S rRNAMycolicibacterium smegmatisBacteriaRF00177M. smegmatis unmethylated 70S ribosome structureElectron microscopy3.2415062025-07-16
235ZEU|1|aSmall subunit ribosomal RNA16S rRNAMycolicibacterium smegmatisBacteriaRF00177M. smegmatis P/P state 30S ribosomal subunitElectron microscopy3.715062018-09-26
246DZK|1|ASmall subunit ribosomal RNA16S rRNAMycolicibacterium smegmatisBacteriaRF00177Cryo-EM Structure of Mycobacterium smegmatis C(minus) 30S ribosomal subunit with MPYElectron microscopy3.615112018-09-19
255XYU|1|ASmall subunit ribosomal RNA16S RNAMycolicibacterium smegmatisBacteriaRF00177Small subunit of Mycobacterium smegmatis ribosomeElectron microscopy3.4513792017-09-27
268YP6|1|aSmall subunit ribosomal RNA16S rRNAMycolicibacterium smegmatis MC2 155BacteriaRF00177Cryo-EM map of 30S ribosomal subunit in complex with MetAP1c of Mycobacterium smegmatisElectron microscopy4.715062025-03-19
279K0Z|1|ASmall subunit ribosomal RNA16S ribosomal RNAMycolicibacterium smegmatis MC2 155BacteriaRF00177EF-G2 bound 70S ribosome complex of M. smegmatisElectron microscopy4.715112025-07-09

Release history

Release3.396
Date2025-07-16

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child

Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.

#SViewPDBTitleMethodResolution#NTs
15XYU|1|ASmall subunit of Mycobacterium smegmatis ribosomeELECTRON MICROSCOPY3.451379
29E0N|1|aM. smegmatis unmethylated 70S ribosome structureELECTRON MICROSCOPY3.241506
39E0P|1|aM. smegmatis methylated 70S ribosome structureELECTRON MICROSCOPY3.171506
45ZEB|1|aM. Smegmatis P/P state 70S ribosome structureELECTRON MICROSCOPY3.41506
55ZEU|1|aM. smegmatis P/P state 30S ribosomal subunitELECTRON MICROSCOPY3.71506
65ZEP|1|aM. smegmatis hibernating state 70S ribosome structureELECTRON MICROSCOPY3.41506
75O5J|1|AStructure of the 30S small ribosomal subunit from Mycobacterium smegmatisELECTRON MICROSCOPY3.451511
85O61|1|BAThe complete structure of the Mycobacterium smegmatis 70S ribosomeELECTRON MICROSCOPY3.311511
99K0Z|1|AEF-G2 bound 70S ribosome complex of M. smegmatisELECTRON MICROSCOPY4.71511
106DZK|1|ACryo-EM Structure of Mycobacterium smegmatis C(minus) 30S ribosomal subunit with MPYELECTRON MICROSCOPY3.61511
116DZI|1|hCryo-EM Structure of Mycobacterium smegmatis 70S C(minus) ribosome 70S-MPY complexELECTRON MICROSCOPY3.461511
128WI7|1|aCryo- EM structure of Mycobacterium smegmatis 70S ribosome, bS1 and RafH.ELECTRON MICROSCOPY3.51515
138WI9|1|aCryo- EM structure of Mycobacterium smegmatis 30S ribosomal subunit (body 2) of 70S ribosome, bS1 and RafH.ELECTRON MICROSCOPY3.51515
148WIB|1|aCryo- EM structure of Mycobacterium smegmatis 70S ribosome, E- tRNA and RafH.ELECTRON MICROSCOPY3.51515
158WID|1|aCryo- EM structure of Mycobacterium smegmatis 30S ribosomal subunit (body 2) of 70S ribosome, E- tRNA and RafH.ELECTRON MICROSCOPY3.51515
168WIF|1|aCryo- EM structure of Mycobacterium smegmatis 30S ribosomal subunit (body 2) of 70S ribosome and RafH.ELECTRON MICROSCOPY2.91517
178WHX|1|aCryo- EM structure of Mycobacterium smegmatis 70S ribosome and RafH.ELECTRON MICROSCOPY2.81515
188FR8|1|aStructure of Mycobacterium smegmatis Rsh bound to a 70S translation initiation complexELECTRON MICROSCOPY2.761511
199B1Y|1|AWT strain WT mycobacterial ribosomeELECTRON MICROSCOPY2.471511
209B24|1|AWT strain gidB mutant mycobacterial ribosomeELECTRON MICROSCOPY2.471511
219B1X|1|AHWS19 strain gidB mutant mycobacterial ribosomeELECTRON MICROSCOPY3.071511
229B1W|1|AHWS19 strain WT mycobacterial ribosomeELECTRON MICROSCOPY3.261511
238YP6|1|aCryo-EM map of 30S ribosomal subunit in complex with MetAP1c of Mycobacterium smegmatisELECTRON MICROSCOPY4.71506
248V9K|1|aCryo-EM structure of the Mycobacterium smegmatis 70S ribosome in complex with hibernation factor Rv2629 (Balon) (Structure 5)ELECTRON MICROSCOPY3.11511
258V9L|1|aCryo-EM structure of the Mycobacterium smegmatis 70S ribosome in complex with hibernation factor Msmeg1130 (Balon) and MsmegEF-Tu(GDP) (Composite structure 6)ELECTRON MICROSCOPY31511
268V9J|1|aCryo-EM structure of the Mycobacterium smegmatis 70S ribosome in complex with hibernation factor Msmeg1130 (Balon) (Structure 4)ELECTRON MICROSCOPY3.11511
278VIO|1|aStructure of Mycobacterium smegmatis HflX bound to a 70S ribosomeELECTRON MICROSCOPY3.261511

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.


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