RNA 3D Hub //

Equivalence class NR_20.0_98017.1 Current

#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodRes. Å#NTsDate
19LEE|1|D (rep)Giant, ornate, lake- and Lactobacillales-derived (GOLLD) RNASag-18RS21 Golld RNAStreptococcus agalactiae 18RS21BacteriaRF02032Composite map of Sag-18RS21 Golld RNAElectron microscopy2.513362025-09-10
29LEE|1|HGiant, ornate, lake- and Lactobacillales-derived (GOLLD) RNASag-18RS21 Golld RNAStreptococcus agalactiae 18RS21BacteriaRF02032Composite map of Sag-18RS21 Golld RNAElectron microscopy2.513362025-09-10
39LEE|1|CGiant, ornate, lake- and Lactobacillales-derived (GOLLD) RNASag-18RS21 Golld RNAStreptococcus agalactiae 18RS21BacteriaRF02032Composite map of Sag-18RS21 Golld RNAElectron microscopy2.513362025-09-10
49LEE|1|EGiant, ornate, lake- and Lactobacillales-derived (GOLLD) RNASag-18RS21 Golld RNAStreptococcus agalactiae 18RS21BacteriaRF02032Composite map of Sag-18RS21 Golld RNAElectron microscopy2.513362025-09-10
59LEE|1|AGiant, ornate, lake- and Lactobacillales-derived (GOLLD) RNASag-18RS21 Golld RNAStreptococcus agalactiae 18RS21BacteriaRF02032Composite map of Sag-18RS21 Golld RNAElectron microscopy2.513362025-09-10
69LEE|1|BGiant, ornate, lake- and Lactobacillales-derived (GOLLD) RNASag-18RS21 Golld RNAStreptococcus agalactiae 18RS21BacteriaRF02032Composite map of Sag-18RS21 Golld RNAElectron microscopy2.513362025-09-10
79LEE|1|GGiant, ornate, lake- and Lactobacillales-derived (GOLLD) RNASag-18RS21 Golld RNAStreptococcus agalactiae 18RS21BacteriaRF02032Composite map of Sag-18RS21 Golld RNAElectron microscopy2.513362025-09-10
89LEE|1|JGiant, ornate, lake- and Lactobacillales-derived (GOLLD) RNASag-18RS21 Golld RNAStreptococcus agalactiae 18RS21BacteriaRF02032Composite map of Sag-18RS21 Golld RNAElectron microscopy2.513362025-09-10
99LEC|1|JGiant, ornate, lake- and Lactobacillales-derived (GOLLD) RNASag-18RS21 Golld RNAStreptococcus agalactiae 18RS21BacteriaRF02032Focused asymmetric unit of Sag-18RS21 Golld RNAElectron microscopy2.513362025-09-10
109LEE|1|IGiant, ornate, lake- and Lactobacillales-derived (GOLLD) RNASag-18RS21 Golld RNAStreptococcus agalactiae 18RS21BacteriaRF02032Composite map of Sag-18RS21 Golld RNAElectron microscopy2.513362025-09-10
119LEE|1|FGiant, ornate, lake- and Lactobacillales-derived (GOLLD) RNASag-18RS21 Golld RNAStreptococcus agalactiae 18RS21BacteriaRF02032Composite map of Sag-18RS21 Golld RNAElectron microscopy2.513362025-09-10
129LEM|1|JGiant, ornate, lake- and Lactobacillales-derived (GOLLD) RNASag-18RS21-tRNASer Golld RNAStreptococcus agalactiae 18RS21BacteriaRF02032Composite map of Sag-18RS21-tRNASer Golld RNAElectron microscopy2.984342025-09-10
139LEM|1|HGiant, ornate, lake- and Lactobacillales-derived (GOLLD) RNASag-18RS21-tRNASer Golld RNAStreptococcus agalactiae 18RS21BacteriaRF02032Composite map of Sag-18RS21-tRNASer Golld RNAElectron microscopy2.984342025-09-10
149LEM|1|CGiant, ornate, lake- and Lactobacillales-derived (GOLLD) RNASag-18RS21-tRNASer Golld RNAStreptococcus agalactiae 18RS21BacteriaRF02032Composite map of Sag-18RS21-tRNASer Golld RNAElectron microscopy2.984342025-09-10
159LEM|1|BGiant, ornate, lake- and Lactobacillales-derived (GOLLD) RNASag-18RS21-tRNASer Golld RNAStreptococcus agalactiae 18RS21BacteriaRF02032Composite map of Sag-18RS21-tRNASer Golld RNAElectron microscopy2.984342025-09-10
169LEM|1|AGiant, ornate, lake- and Lactobacillales-derived (GOLLD) RNASag-18RS21-tRNASer Golld RNAStreptococcus agalactiae 18RS21BacteriaRF02032Composite map of Sag-18RS21-tRNASer Golld RNAElectron microscopy2.984342025-09-10
179LEM|1|GGiant, ornate, lake- and Lactobacillales-derived (GOLLD) RNASag-18RS21-tRNASer Golld RNAStreptococcus agalactiae 18RS21BacteriaRF02032Composite map of Sag-18RS21-tRNASer Golld RNAElectron microscopy2.984342025-09-10
189LEM|1|IGiant, ornate, lake- and Lactobacillales-derived (GOLLD) RNASag-18RS21-tRNASer Golld RNAStreptococcus agalactiae 18RS21BacteriaRF02032Composite map of Sag-18RS21-tRNASer Golld RNAElectron microscopy2.984342025-09-10
199LEM|1|EGiant, ornate, lake- and Lactobacillales-derived (GOLLD) RNASag-18RS21-tRNASer Golld RNAStreptococcus agalactiae 18RS21BacteriaRF02032Composite map of Sag-18RS21-tRNASer Golld RNAElectron microscopy2.984342025-09-10
209LEM|1|DGiant, ornate, lake- and Lactobacillales-derived (GOLLD) RNASag-18RS21-tRNASer Golld RNAStreptococcus agalactiae 18RS21BacteriaRF02032Composite map of Sag-18RS21-tRNASer Golld RNAElectron microscopy2.984342025-09-10
219LEM|1|FGiant, ornate, lake- and Lactobacillales-derived (GOLLD) RNASag-18RS21-tRNASer Golld RNAStreptococcus agalactiae 18RS21BacteriaRF02032Composite map of Sag-18RS21-tRNASer Golld RNAElectron microscopy2.984342025-09-10
229LEL|1|JGiant, ornate, lake- and Lactobacillales-derived (GOLLD) RNASag-18RS21-tRNASer Golld RNAStreptococcus agalactiae 18RS21BacteriaRF02032Focused asymmetric unit of Sag-18RS21-tRNASer Golld RNAElectron microscopy2.984342025-09-10
239L0R|1|GGiant, ornate, lake- and Lactobacillales-derived (GOLLD) RNARNA (700-MER)Streptococcus agalactiaeBacteriaRF02032Streptococcus agalactiae GOLLD RNA dodecamerElectron microscopy4.726452025-03-19
249L0R|1|CGiant, ornate, lake- and Lactobacillales-derived (GOLLD) RNARNA (700-MER)Streptococcus agalactiaeBacteriaRF02032Streptococcus agalactiae GOLLD RNA dodecamerElectron microscopy4.726452025-03-19
259L0R|1|BGiant, ornate, lake- and Lactobacillales-derived (GOLLD) RNARNA (700-MER)Streptococcus agalactiaeBacteriaRF02032Streptococcus agalactiae GOLLD RNA dodecamerElectron microscopy4.726452025-03-19
269L0R|1|DGiant, ornate, lake- and Lactobacillales-derived (GOLLD) RNARNA (700-MER)Streptococcus agalactiaeBacteriaRF02032Streptococcus agalactiae GOLLD RNA dodecamerElectron microscopy4.726452025-03-19
279L0R|1|JGiant, ornate, lake- and Lactobacillales-derived (GOLLD) RNARNA (700-MER)Streptococcus agalactiaeBacteriaRF02032Streptococcus agalactiae GOLLD RNA dodecamerElectron microscopy4.726452025-03-19
289L0R|1|LGiant, ornate, lake- and Lactobacillales-derived (GOLLD) RNARNA (700-MER)Streptococcus agalactiaeBacteriaRF02032Streptococcus agalactiae GOLLD RNA dodecamerElectron microscopy4.726452025-03-19
299L0R|1|AGiant, ornate, lake- and Lactobacillales-derived (GOLLD) RNARNA (700-MER)Streptococcus agalactiaeBacteriaRF02032Streptococcus agalactiae GOLLD RNA dodecamerElectron microscopy4.726452025-03-19
309L0R|1|KGiant, ornate, lake- and Lactobacillales-derived (GOLLD) RNARNA (700-MER)Streptococcus agalactiaeBacteriaRF02032Streptococcus agalactiae GOLLD RNA dodecamerElectron microscopy4.726452025-03-19
319L0R|1|FGiant, ornate, lake- and Lactobacillales-derived (GOLLD) RNARNA (700-MER)Streptococcus agalactiaeBacteriaRF02032Streptococcus agalactiae GOLLD RNA dodecamerElectron microscopy4.726452025-03-19
329L0R|1|IGiant, ornate, lake- and Lactobacillales-derived (GOLLD) RNARNA (700-MER)Streptococcus agalactiaeBacteriaRF02032Streptococcus agalactiae GOLLD RNA dodecamerElectron microscopy4.726452025-03-19
339L0R|1|EGiant, ornate, lake- and Lactobacillales-derived (GOLLD) RNARNA (700-MER)Streptococcus agalactiaeBacteriaRF02032Streptococcus agalactiae GOLLD RNA dodecamerElectron microscopy4.726452025-03-19
349L0R|1|HGiant, ornate, lake- and Lactobacillales-derived (GOLLD) RNARNA (700-MER)Streptococcus agalactiaeBacteriaRF02032Streptococcus agalactiae GOLLD RNA dodecamerElectron microscopy4.726452025-03-19
359LMF|1|AGiant, ornate, lake- and Lactobacillales-derived (GOLLD) RNARNA (700-MER)Streptococcus agalactiaeBacteriaRF02032Streptococcus agalactiae GOLLD RNA 3' domain decamerElectron microscopy3.933172025-03-19
369LMF|1|FGiant, ornate, lake- and Lactobacillales-derived (GOLLD) RNARNA (700-MER)Streptococcus agalactiaeBacteriaRF02032Streptococcus agalactiae GOLLD RNA 3' domain decamerElectron microscopy3.933172025-03-19
379LMF|1|JGiant, ornate, lake- and Lactobacillales-derived (GOLLD) RNARNA (700-MER)Streptococcus agalactiaeBacteriaRF02032Streptococcus agalactiae GOLLD RNA 3' domain decamerElectron microscopy3.933172025-03-19
389LMF|1|BGiant, ornate, lake- and Lactobacillales-derived (GOLLD) RNARNA (700-MER)Streptococcus agalactiaeBacteriaRF02032Streptococcus agalactiae GOLLD RNA 3' domain decamerElectron microscopy3.933172025-03-19
399LMF|1|HGiant, ornate, lake- and Lactobacillales-derived (GOLLD) RNARNA (700-MER)Streptococcus agalactiaeBacteriaRF02032Streptococcus agalactiae GOLLD RNA 3' domain decamerElectron microscopy3.933172025-03-19
409LMF|1|GGiant, ornate, lake- and Lactobacillales-derived (GOLLD) RNARNA (700-MER)Streptococcus agalactiaeBacteriaRF02032Streptococcus agalactiae GOLLD RNA 3' domain decamerElectron microscopy3.933172025-03-19
419LMF|1|IGiant, ornate, lake- and Lactobacillales-derived (GOLLD) RNARNA (700-MER)Streptococcus agalactiaeBacteriaRF02032Streptococcus agalactiae GOLLD RNA 3' domain decamerElectron microscopy3.933172025-03-19
429LMF|1|EGiant, ornate, lake- and Lactobacillales-derived (GOLLD) RNARNA (700-MER)Streptococcus agalactiaeBacteriaRF02032Streptococcus agalactiae GOLLD RNA 3' domain decamerElectron microscopy3.933172025-03-19
439LMF|1|DGiant, ornate, lake- and Lactobacillales-derived (GOLLD) RNARNA (700-MER)Streptococcus agalactiaeBacteriaRF02032Streptococcus agalactiae GOLLD RNA 3' domain decamerElectron microscopy3.933172025-03-19
449LMF|1|CGiant, ornate, lake- and Lactobacillales-derived (GOLLD) RNARNA (700-MER)Streptococcus agalactiaeBacteriaRF02032Streptococcus agalactiae GOLLD RNA 3' domain decamerElectron microscopy3.933172025-03-19

Release history

Release4.4
Date2025-09-10

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child

Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.

#SViewPDBTitleMethodResolution#NTs
19LEL|1|JFocused asymmetric unit of Sag-18RS21-tRNASer Golld RNAELECTRON MICROSCOPY2.98434
29LEM|1|HComposite map of Sag-18RS21-tRNASer Golld RNAELECTRON MICROSCOPY2.98434
39LEM|1|AComposite map of Sag-18RS21-tRNASer Golld RNAELECTRON MICROSCOPY2.98434
49LEM|1|DComposite map of Sag-18RS21-tRNASer Golld RNAELECTRON MICROSCOPY2.98434
59LEM|1|IComposite map of Sag-18RS21-tRNASer Golld RNAELECTRON MICROSCOPY2.98434
69LEM|1|GComposite map of Sag-18RS21-tRNASer Golld RNAELECTRON MICROSCOPY2.98434
79LEM|1|EComposite map of Sag-18RS21-tRNASer Golld RNAELECTRON MICROSCOPY2.98434
89LEM|1|BComposite map of Sag-18RS21-tRNASer Golld RNAELECTRON MICROSCOPY2.98434
99LEM|1|CComposite map of Sag-18RS21-tRNASer Golld RNAELECTRON MICROSCOPY2.98434
109LEM|1|JComposite map of Sag-18RS21-tRNASer Golld RNAELECTRON MICROSCOPY2.98434
119LEM|1|FComposite map of Sag-18RS21-tRNASer Golld RNAELECTRON MICROSCOPY2.98434
129LEE|1|AComposite map of Sag-18RS21 Golld RNAELECTRON MICROSCOPY2.51336
139LEE|1|BComposite map of Sag-18RS21 Golld RNAELECTRON MICROSCOPY2.51336
149LEE|1|EComposite map of Sag-18RS21 Golld RNAELECTRON MICROSCOPY2.51336
159LEE|1|IComposite map of Sag-18RS21 Golld RNAELECTRON MICROSCOPY2.51336
169LEE|1|CComposite map of Sag-18RS21 Golld RNAELECTRON MICROSCOPY2.51336
179LEE|1|HComposite map of Sag-18RS21 Golld RNAELECTRON MICROSCOPY2.51336
189LEE|1|FComposite map of Sag-18RS21 Golld RNAELECTRON MICROSCOPY2.51336
199LEE|1|GComposite map of Sag-18RS21 Golld RNAELECTRON MICROSCOPY2.51336
209LEE|1|DComposite map of Sag-18RS21 Golld RNAELECTRON MICROSCOPY2.51336
219LEE|1|JComposite map of Sag-18RS21 Golld RNAELECTRON MICROSCOPY2.51336
229LEC|1|JFocused asymmetric unit of Sag-18RS21 Golld RNAELECTRON MICROSCOPY2.51336
239LMF|1|BStreptococcus agalactiae GOLLD RNA 3' domain decamerELECTRON MICROSCOPY3.93317
249LMF|1|EStreptococcus agalactiae GOLLD RNA 3' domain decamerELECTRON MICROSCOPY3.93317
259LMF|1|DStreptococcus agalactiae GOLLD RNA 3' domain decamerELECTRON MICROSCOPY3.93317
269LMF|1|FStreptococcus agalactiae GOLLD RNA 3' domain decamerELECTRON MICROSCOPY3.93317
279LMF|1|IStreptococcus agalactiae GOLLD RNA 3' domain decamerELECTRON MICROSCOPY3.93317
289LMF|1|AStreptococcus agalactiae GOLLD RNA 3' domain decamerELECTRON MICROSCOPY3.93317
299LMF|1|HStreptococcus agalactiae GOLLD RNA 3' domain decamerELECTRON MICROSCOPY3.93317
309LMF|1|GStreptococcus agalactiae GOLLD RNA 3' domain decamerELECTRON MICROSCOPY3.93317
319LMF|1|CStreptococcus agalactiae GOLLD RNA 3' domain decamerELECTRON MICROSCOPY3.93317
329LMF|1|JStreptococcus agalactiae GOLLD RNA 3' domain decamerELECTRON MICROSCOPY3.93317
339L0R|1|GStreptococcus agalactiae GOLLD RNA dodecamerELECTRON MICROSCOPY4.72645
349L0R|1|CStreptococcus agalactiae GOLLD RNA dodecamerELECTRON MICROSCOPY4.72645
359L0R|1|LStreptococcus agalactiae GOLLD RNA dodecamerELECTRON MICROSCOPY4.72645
369L0R|1|HStreptococcus agalactiae GOLLD RNA dodecamerELECTRON MICROSCOPY4.72645
379L0R|1|KStreptococcus agalactiae GOLLD RNA dodecamerELECTRON MICROSCOPY4.72645
389L0R|1|FStreptococcus agalactiae GOLLD RNA dodecamerELECTRON MICROSCOPY4.72645
399L0R|1|AStreptococcus agalactiae GOLLD RNA dodecamerELECTRON MICROSCOPY4.72645
409L0R|1|JStreptococcus agalactiae GOLLD RNA dodecamerELECTRON MICROSCOPY4.72645
419L0R|1|IStreptococcus agalactiae GOLLD RNA dodecamerELECTRON MICROSCOPY4.72645
429L0R|1|BStreptococcus agalactiae GOLLD RNA dodecamerELECTRON MICROSCOPY4.72645
439L0R|1|EStreptococcus agalactiae GOLLD RNA dodecamerELECTRON MICROSCOPY4.72645
449L0R|1|DStreptococcus agalactiae GOLLD RNA dodecamerELECTRON MICROSCOPY4.72645

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.


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