Equivalence class NR_3.0_02127.1 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | #NTs | Date |
|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 7OM7|1|H+ 7OM7|1|G (rep) | RNA (5'-R(P*AP*AP*AP*UP*UP*U)-3') | synthetic construct | Thosea asigna virus RdRP domain in complex with RNA and nucleotide UMPNPP | X-ray diffraction | 2.4 | 8 | 2021-07-28 | |||
| 2 | 7OM6|1|E+ 7OM6|1|C | RNA (5'-R(P*AP*AP*AP*UP*UP*U)-3') | synthetic construct | Thosea asigna virus RdRP domain in complex with RNA | X-ray diffraction | 2.18 | 8 | 2021-07-28 | |||
| 3 | 7OM7|1|F+ 7OM7|1|E | RNA (5'-R(P*AP*AP*AP*UP*UP*U)-3') | synthetic construct | Thosea asigna virus RdRP domain in complex with RNA and nucleotide UMPNPP | X-ray diffraction | 2.4 | 8 | 2021-07-28 | |||
| 4 | 7OM7|1|I+ 7OM7|1|J | RNA (5'-R(P*AP*AP*AP*UP*UP*U)-3') | synthetic construct | Thosea asigna virus RdRP domain in complex with RNA and nucleotide UMPNPP | X-ray diffraction | 2.4 | 15 | 2021-07-28 | |||
| 5 | 7OM6|1|F+ 7OM6|1|D | RNA (5'-R(P*AP*AP*AP*UP*UP*U)-3') | synthetic construct | Thosea asigna virus RdRP domain in complex with RNA | X-ray diffraction | 2.18 | 8 | 2021-07-28 | |||
| 6 | 4WTA|1|T+ 4WTA|1|P | RNA PRIMER TEMPLATE CAAAAUUU | synthetic construct | CRYSTAL STRUCTURE OF HCV NS5B GENOTYPE 2A JFH-1 ISOLATE WITH S15G E86Q E87Q C223H V321I MUTATIONS AND DELTA8 BETA HAIRPIN LOOP DELETION IN COMPLEX WITH UDP, MN2+ AND SYMMETRICAL PRIMER TEMPLATE 5'-CAAAAUUU | X-ray diffraction | 2.8 | 8 | 2015-02-11 | |||
| 7 | 7OM7|1|K+ 7OM7|1|L | RNA (5'-R(P*AP*AP*AP*UP*UP*U)-3') | synthetic construct | Thosea asigna virus RdRP domain in complex with RNA and nucleotide UMPNPP | X-ray diffraction | 2.4 | 14 | 2021-07-28 | |||
| 8 | 4WTF|1|T+ 4WTF|1|P | RNA PRIMER TEMPLATE CAAAAUUU | synthetic construct | CRYSTAL STRUCTURE OF HCV NS5B GENOTYPE 2A JFH-1 ISOLATE WITH S15G E86Q E87Q C223H V321I MUTATIONS AND DELTA8 BETA HAIRPIN LOOP DELETION IN COMPLEX WITH GS-639475, MN2+ AND SYMMETRICAL PRIMER TEMPLATE 5'-CAAAAUUU | X-ray diffraction | 2.65 | 8 | 2015-02-11 | |||
| 9 | 4WTG|1|T+ 4WTG|1|P | RNA PRIMER TEMPLATE CAAAAUUU | synthetic construct | CRYSTAL STRUCTURE OF HCV NS5B GENOTYPE 2A JFH-1 ISOLATE WITH S15G E86Q E87Q C223H V321I MUTATIONS AND DELTA8 BETA HAIRPIN LOOP DELETION IN COMPLEX WITH SOFOSBUVIR DIPHOSPHATE GS-607596, MN2+ AND SYMMETRICAL PRIMER TEMPLATE 5'-CAAAAUUU | X-ray diffraction | 2.9 | 8 | 2015-02-11 |
Release history
| Release | 3.189 | 3.190 | 3.191 | 3.192 | 3.193 | 3.194 | 3.195 | 3.196 | 3.197 | 3.198 | 3.199 | 3.200 | 3.201 | 3.202 | 3.203 | 3.204 | 3.205 | 3.206 | 3.207 | 3.208 | 3.209 | 3.210 | 3.211 | 3.212 | 3.213 | 3.214 | 3.215 | 3.216 | 3.217 | 3.218 | 3.219 | 3.220 | 3.221 | 3.222 | 3.223 | 3.224 | 3.225 | 3.226 | 3.227 | 3.228 | 3.229 | 3.230 | 3.231 | 3.232 | 3.233 | 3.234 | 3.235 | 3.236 | 3.237 | 3.238 | 3.239 | 3.240 | 3.241 | 3.242 | 3.243 | 3.244 | 3.245 | 3.246 | 3.247 | 3.248 | 3.249 | 3.250 | 3.251 | 3.252 | 3.253 | 3.254 | 3.255 | 3.256 | 3.257 | 3.258 | 3.259 | 3.260 | 3.261 | 3.262 | 3.263 | 3.264 | 3.265 | 3.266 | 3.267 | 3.268 | 3.269 | 3.270 | 3.271 | 3.272 | 3.273 | 3.274 | 3.275 | 3.276 | 3.277 | 3.278 | 3.279 | 3.280 | 3.281 | 3.282 | 3.283 | 3.284 | 3.285 | 3.286 | 3.287 | 3.288 | 3.289 | 3.290 | 3.291 | 3.292 | 3.293 | 3.294 | 3.295 | 3.296 | 3.297 | 3.298 | 3.299 | 3.300 | 3.301 | 3.302 | 3.303 | 3.304 | 3.305 | 3.306 | 3.307 | 3.308 | 3.309 | 3.310 | 3.311 | 3.312 | 3.313 | 3.314 | 3.315 | 3.316 | 3.317 | 3.318 | 3.319 | 3.320 | 3.321 | 3.322 | 3.323 | 3.324 | 3.325 | 3.326 | 3.327 | 3.328 | 3.329 | 3.330 | 3.331 | 3.332 | 3.333 | 3.334 | 3.335 | 3.336 | 3.337 | 3.338 | 3.339 | 3.340 | 3.341 | 3.342 | 3.343 | 3.344 | 3.345 | 3.346 | 3.347 | 3.348 | 3.349 | 3.350 | 3.351 | 3.352 | 3.353 | 3.354 | 3.355 | 3.356 | 3.357 | 3.358 | 3.359 | 3.360 | 3.361 | 3.362 | 3.363 | 3.364 | 3.365 | 3.366 | 3.367 | 3.368 | 3.369 | 3.370 | 3.371 | 3.372 | 3.373 | 3.374 | 3.375 | 3.376 | 3.377 |
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| Date | 2021-07-28 | 2021-08-04 | 2021-08-11 | 2021-08-18 | 2021-08-25 | 2021-09-01 | 2021-09-08 | 2021-09-15 | 2021-09-22 | 2021-09-29 | 2021-10-06 | 2021-10-13 | 2021-10-20 | 2021-10-27 | 2021-11-03 | 2021-11-10 | 2021-11-17 | 2021-11-24 | 2021-12-01 | 2021-12-08 | 2021-12-15 | 2021-12-22 | 2021-12-29 | 2022-01-05 | 2022-01-12 | 2022-01-19 | 2022-01-26 | 2022-02-02 | 2022-02-09 | 2022-02-16 | 2022-02-23 | 2022-03-02 | 2022-03-09 | 2022-03-16 | 2022-03-23 | 2022-03-30 | 2022-04-06 | 2022-04-13 | 2022-04-20 | 2022-04-27 | 2022-05-04 | 2022-05-11 | 2022-05-18 | 2022-05-25 | 2022-06-01 | 2022-06-08 | 2022-06-15 | 2022-06-22 | 2022-06-29 | 2022-07-06 | 2022-07-13 | 2022-07-20 | 2022-07-27 | 2022-08-03 | 2022-08-10 | 2022-08-17 | 2022-08-24 | 2022-08-31 | 2022-09-07 | 2022-09-14 | 2022-09-21 | 2022-09-28 | 2022-10-05 | 2022-10-12 | 2022-10-19 | 2022-10-26 | 2022-11-02 | 2022-11-09 | 2022-11-16 | 2022-11-23 | 2022-11-30 | 2022-12-07 | 2022-12-14 | 2022-12-21 | 2022-12-28 | 2023-01-04 | 2023-01-11 | 2023-01-18 | 2023-01-25 | 2023-02-01 | 2023-02-08 | 2023-02-15 | 2023-02-22 | 2023-03-01 | 2023-03-08 | 2023-03-15 | 2023-03-22 | 2023-03-29 | 2023-04-05 | 2023-04-12 | 2023-04-19 | 2023-04-26 | 2023-05-03 | 2023-05-10 | 2023-05-17 | 2023-05-24 | 2023-05-31 | 2023-06-07 | 2023-06-14 | 2023-06-21 | 2023-06-28 | 2023-07-05 | 2023-07-12 | 2023-07-19 | 2023-07-26 | 2023-08-02 | 2023-08-09 | 2023-08-16 | 2023-08-23 | 2023-08-30 | 2023-09-06 | 2023-09-13 | 2023-09-20 | 2023-09-27 | 2023-10-04 | 2023-10-11 | 2023-10-18 | 2023-10-25 | 2023-11-01 | 2023-11-08 | 2023-11-15 | 2023-11-24 | 2023-11-29 | 2023-12-06 | 2023-12-13 | 2023-12-20 | 2023-12-27 | 2024-01-03 | 2024-01-10 | 2024-01-17 | 2024-01-24 | 2024-01-31 | 2024-02-07 | 2024-02-14 | 2024-02-21 | 2024-02-28 | 2024-03-06 | 2024-03-13 | 2024-03-20 | 2024-03-27 | 2024-04-03 | 2024-04-10 | 2024-04-17 | 2024-04-24 | 2024-05-01 | 2024-05-08 | 2024-05-15 | 2024-05-22 | 2024-05-29 | 2024-06-05 | 2024-06-12 | 2024-06-19 | 2024-06-26 | 2024-07-03 | 2024-07-10 | 2024-07-17 | 2024-07-25 | 2024-07-31 | 2024-08-07 | 2024-08-14 | 2024-08-21 | 2024-08-28 | 2024-09-04 | 2024-09-11 | 2024-09-18 | 2024-09-25 | 2024-10-02 | 2024-10-09 | 2024-10-16 | 2024-10-23 | 2024-10-30 | 2024-11-06 | 2024-11-13 | 2024-11-20 | 2024-11-27 | 2024-12-04 | 2024-12-11 | 2024-12-18 | 2024-12-25 | 2025-01-01 | 2025-01-08 | 2025-01-15 | 2025-01-22 | 2025-01-29 | 2025-02-05 | 2025-02-12 | 2025-02-19 | 2025-02-26 | 2025-03-05 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|---|---|---|---|---|
| NR_3.0_02127.1 | NR_3.0_50058.1 | 3.189 | (3) 4WTA|1|T+4WTA|1|P, 4WTF|1|T+4WTF|1|P, 4WTG|1|T+4WTG|1|P | (6) 7OM6|1|E+7OM6|1|C, 7OM6|1|F+7OM6|1|D, 7OM7|1|F+7OM7|1|E, 7OM7|1|H+7OM7|1|G, 7OM7|1|I+7OM7|1|J, 7OM7|1|K+7OM7|1|L | (0) |
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|
Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.
| #S | View | PDB | Title | Method | Resolution | #NTs |
|---|---|---|---|---|---|---|
| 1 | 4WTF|1|T+ 4WTF|1|P | CRYSTAL STRUCTURE OF HCV NS5B GENOTYPE 2A JFH-1 ISOLATE WITH S15G E86Q E87Q C223H V321I MUTATIONS AND DELTA8 BETA HAIRPIN LOOP DELETION IN COMPLEX WITH GS-639475, MN2+ AND SYMMETRICAL PRIMER TEMPLATE 5'-CAAAAUUU | X-RAY DIFFRACTION | 2.65 | 8 | |
| 2 | 4WTG|1|T+ 4WTG|1|P | CRYSTAL STRUCTURE OF HCV NS5B GENOTYPE 2A JFH-1 ISOLATE WITH S15G E86Q E87Q C223H V321I MUTATIONS AND DELTA8 BETA HAIRPIN LOOP DELETION IN COMPLEX WITH SOFOSBUVIR DIPHOSPHATE GS-607596, MN2+ AND SYMMETRICAL PRIMER TEMPLATE 5'-CAAAAUUU | X-RAY DIFFRACTION | 2.9 | 8 | |
| 3 | 4WTA|1|T+ 4WTA|1|P | CRYSTAL STRUCTURE OF HCV NS5B GENOTYPE 2A JFH-1 ISOLATE WITH S15G E86Q E87Q C223H V321I MUTATIONS AND DELTA8 BETA HAIRPIN LOOP DELETION IN COMPLEX WITH UDP, MN2+ AND SYMMETRICAL PRIMER TEMPLATE 5'-CAAAAUUU | X-RAY DIFFRACTION | 2.8 | 8 | |
| 4 | 7OM6|1|E+ 7OM6|1|C | Thosea asigna virus RdRP domain in complex with RNA | X-RAY DIFFRACTION | 2.18 | 8 | |
| 5 | 7OM7|1|K+ 7OM7|1|L | Thosea asigna virus RdRP domain in complex with RNA and nucleotide UMPNPP | X-RAY DIFFRACTION | 2.4 | 14 | |
| 6 | 7OM7|1|F+ 7OM7|1|E | Thosea asigna virus RdRP domain in complex with RNA and nucleotide UMPNPP | X-RAY DIFFRACTION | 2.4 | 8 | |
| 7 | 7OM6|1|F+ 7OM6|1|D | Thosea asigna virus RdRP domain in complex with RNA | X-RAY DIFFRACTION | 2.18 | 8 | |
| 8 | 7OM7|1|H+ 7OM7|1|G | Thosea asigna virus RdRP domain in complex with RNA and nucleotide UMPNPP | X-RAY DIFFRACTION | 2.4 | 8 | |
| 9 | 7OM7|1|I+ 7OM7|1|J | Thosea asigna virus RdRP domain in complex with RNA and nucleotide UMPNPP | X-RAY DIFFRACTION | 2.4 | 15 |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.
Coloring options: