NR_3.0_03510.67

Members (66)
History
Heat map

Filter:

Showing 1 to 66 of 66 entries

#	IFE	Standardized name	Molecule	Organism	Source	Rfam	Title	Method	Res. Å	#NTs	Date
1	8P9A\|1\|sR (rep)	Small subunit ribosomal RNA	16S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF01960	80S yeast ribosome in complex with Methyllissoclimide	X-ray diffraction	2.9	1783	2024-11-27
2	8P9A\|1\|A	Small subunit ribosomal RNA	16S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF01960	80S yeast ribosome in complex with Methyllissoclimide	X-ray diffraction	2.9	1741	2024-11-27
3	5TBW\|1\|sR	Small subunit ribosomal RNA	18S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF01960	Crystal structure of chlorolissoclimide bound to the yeast 80S ribosome	X-ray diffraction	3	1783	2017-07-26
4	4V88\|1\|A6	Small subunit ribosomal RNA	18S rRNA	Saccharomyces cerevisiae	Eukarya	RF01960	The structure of the eukaryotic ribosome at 3.0 A resolution.	X-ray diffraction	3	1795	2014-07-09
5	8PNN\|1\|sR	Small subunit ribosomal RNA	16S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF01960	80S yeast ribosome in complex with Bromolissoclimide	X-ray diffraction	2.9	1783	2025-05-28
6	4V88\|1\|A2	Small subunit ribosomal RNA	18S RIBOSOMAL RNA	Saccharomyces cerevisiae	Eukarya	RF01960	The structure of the eukaryotic ribosome at 3.0 A resolution.	X-ray diffraction	3	1781	2014-07-09
7	5TBW\|1\|A	Small subunit ribosomal RNA	18S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF01960	Crystal structure of chlorolissoclimide bound to the yeast 80S ribosome	X-ray diffraction	3	1781	2017-07-26
8	8PNN\|1\|A	Small subunit ribosomal RNA	16S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF01960	80S yeast ribosome in complex with Bromolissoclimide	X-ray diffraction	2.9	1722	2025-05-28
9	7OSA\|1\|18S	Small subunit ribosomal RNA	18S rRNA	Saccharomyces cerevisiae	Eukarya	RF01960	Pre-translocation complex of 80 S.cerevisiae ribosome with eEF2 and ligands	X-ray diffraction	3	1717	2021-12-08
10	7OSM\|1\|18S	Small subunit ribosomal RNA	18S rRNA	Saccharomyces cerevisiae	Eukarya	RF01960	Intermediate translocation complex of 80 S.cerevisiae ribosome with eEF2 and ligands	X-ray diffraction	3	1732	2021-12-08
11	8T2Y\|1\|B5	Small subunit ribosomal RNA	18S rRNA	Saccharomyces cerevisiae	Eukarya	RF01960	Hypomethylated yeast 80S bound with cycloheximide, P-site tRNA, and A-site tRNA, messenger RNA, PRE	Electron microscopy	2.2	1782	2024-12-11
12	8CCS\|1\|c	Small subunit ribosomal RNA	18S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF01960	80S S. cerevisiae ribosome with ligands in hybrid-1 pre-translocation (PRE-H1) complex	Electron microscopy	1.97	1604	2023-09-20
13	8EVP\|1\|B5	Small subunit ribosomal RNA	18S rRNA	Saccharomyces cerevisiae	Eukarya	RF01960	Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), Structure I	Electron microscopy	2.38	1782	2023-09-06
14	8CDR\|1\|c	Small subunit ribosomal RNA	18S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF01960	Translocation intermediate 2 (TI-2) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarin	Electron microscopy	2.04	1608	2023-09-20
15	8CEH\|1\|c	Small subunit ribosomal RNA	18S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF01960	Translocation intermediate 4 (TI-4) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarin	Electron microscopy	2.05	1608	2023-09-20
16	7ZW0\|1\|2	Small subunit ribosomal RNA	18S ribosomal RNA (RDN18-1)	Saccharomyces cerevisiae W303	Eukarya	RF01960	FAP-80S Complex - Rotated state	Electron microscopy	2.4	1765	2022-10-05
17	8T2Z\|1\|B5	Small subunit ribosomal RNA	18S rRNA	Saccharomyces cerevisiae	Eukarya	RF01960	Hypomethylated yeast 80S bound with cycloheximide, P-site tRNA, and A-site tRNA, messenger RNA, POST	Electron microscopy	2.4	1757	2024-12-11
18	8EWC\|1\|B5	Small subunit ribosomal RNA	18S rRNA	Saccharomyces cerevisiae	Eukarya	RF01960	Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), Structure II	Electron microscopy	2.45	1782	2023-09-06
19	8T2X\|1\|B5	Small subunit ribosomal RNA	18S rRNA	Saccharomyces cerevisiae	Eukarya	RF01960	Hypomethylated yeast 80S bound with cycloheximide, P-site tRNA, A-site tRNA, messenger RNA and eIF5A, PRE	Electron microscopy	2.46	1782	2024-12-11
20	8BN3\|1\|2	Small subunit ribosomal RNA	18S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF01960	Yeast 80S, ES7s delta, eIF5A, Stm1 containing	Electron microscopy	2.4	1737	2024-01-10
21	8EUB\|1\|B5	Small subunit ribosomal RNA	18S rRNA	Saccharomyces cerevisiae	Eukarya	RF01960	Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2 and GDP, Structure I	Electron microscopy	2.52	1782	2023-09-06
22	7ZUX\|1\|2	Small subunit ribosomal RNA	18S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF01960	Collided ribosome in a disome unit from S. cerevisiae	Electron microscopy	2.5	1769	2023-02-22
23	8ZHC\|1\|S2	Small subunit ribosomal RNA	chain 2 18S rRNA (1799-MER)	Saccharomyces cerevisiae S288C	Eukarya	RF01960	pre-frameshift complex of yeast 80S ribosome with eRF1 and mRNA of WNV	Electron microscopy	2.3	1771	2025-05-21
24	8CGN\|1\|c	Small subunit ribosomal RNA	18S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF01960	Non-rotated 80S S. cerevisiae ribosome with ligands	Electron microscopy	2.28	1624	2023-09-20
25	7MPJ\|1\|B5	Small subunit ribosomal RNA	18S rRNA	Saccharomyces cerevisiae	Eukarya	RF01960	Stm1 bound vacant 80S structure isolated from nop1-D243A	Electron microscopy	2.7	1781	2022-05-11
26	8EVQ\|1\|B5	Small subunit ribosomal RNA	18S rRNA	Saccharomyces cerevisiae	Eukarya	RF01960	Hypopseudouridylated Ribosome bound with TSV IRES, eEF2, GDP, and sordarin, Structure I	Electron microscopy	2.72	1782	2023-09-06
27	6T4Q\|1\|C2	Small subunit ribosomal RNA	18S rRNA	Saccharomyces cerevisiae	Eukarya	RF01960	Structure of yeast 80S ribosome stalled on the CGA-CCG inhibitory codon combination.	Electron microscopy	2.6	1771	2019-12-25
28	8CIV\|1\|c	Small subunit ribosomal RNA	18S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF01960	Translocation intermediate 5 (TI-5) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarin	Electron microscopy	2.47	1622	2023-09-20
29	8ZHB\|1\|S2	Small subunit ribosomal RNA	chain 2 18S rRNA (1799-MER)	Saccharomyces cerevisiae S288C	Eukarya	RF01960	80S ribosome with A/A P/E tRNA and mRNA of WNV	Electron microscopy	2.6	1771	2025-05-21
30	8EWB\|1\|B5	Small subunit ribosomal RNA	18S rRNA	Saccharomyces cerevisiae	Eukarya	RF01960	Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2 and GDP, Structure III	Electron microscopy	2.87	1782	2023-09-06
31	8T30\|1\|B5	Small subunit ribosomal RNA	18S rRNA	Saccharomyces cerevisiae	Eukarya	RF01960	Hypomethylated yeast 80S bound with cycloheximide, unmodified U2921, mid rotated	Electron microscopy	2.88	1782	2024-12-11
32	6WOO\|1\|2	Small subunit ribosomal RNA	18S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF01960	CryoEM structure of yeast 80S ribosome with Met-tRNAiMet, eIF5B, and GDP	Electron microscopy	2.9	1780	2020-09-23
33	4U4R\|1\|6	Small subunit ribosomal RNA	18S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF01960	Crystal structure of Lactimidomycin bound to the yeast 80S ribosome	X-ray diffraction	2.8	1795	2014-10-22
34	8T3A\|1\|B5	Small subunit ribosomal RNA	18S rRNA	Saccharomyces cerevisiae	Eukarya	RF01960	Hypomethylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, sordarin, and hibernating factor Los2	Electron microscopy	2.86	1757	2024-12-11
35	8CG8\|1\|c	Small subunit ribosomal RNA	18S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF01960	Translocation intermediate 3 (TI-3) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarin	Electron microscopy	2.57	1608	2023-09-20
36	8ZH3\|1\|S2	Small subunit ribosomal RNA	chain 2 18S rRNA (1771-MER)	Saccharomyces cerevisiae S288C	Eukarya	RF01960	80S ribosome with A/P-P/E tRNA and mRNA of WNV	Electron microscopy	2.7	1771	2025-05-21
37	9F9S\|1\|S1	Small subunit ribosomal RNA	Saccharomyces cerevisiae S288C 18S ribosomal RNA (RDN18-1)	Saccharomyces cerevisiae	Eukarya	RF01960	Yeast SDD1 Disome with Mbf1	Electron microscopy	2.9	1771	2024-12-04
38	6TB3\|1\|2	Small subunit ribosomal RNA	Saccharomyces cerevisiae S288C 18S ribosomal RNA (RDN18-1), rRNA	Saccharomyces cerevisiae	Eukarya	RF01960	yeast 80S ribosome in complex with the Not5 subunit of the CCR4-NOT complex	Electron microscopy	2.8	1771	2020-04-22
39	6SNT\|1\|2	Small subunit ribosomal RNA	Saccharomyces cerevisiae S288C 18S ribosomal RNA (RDN18-1), rRNA	Saccharomyces cerevisiae	Eukarya	RF01960	Yeast 80S ribosome stalled on SDD1 mRNA.	Electron microscopy	2.8	1771	2020-03-04
40	9F9S\|1\|R1	Small subunit ribosomal RNA	Saccharomyces cerevisiae S288C 18S ribosomal RNA (RDN18-1)	Saccharomyces cerevisiae	Eukarya	RF01960	Yeast SDD1 Disome with Mbf1	Electron microscopy	2.9	1758	2024-12-04
41	4U3U\|1\|6	Small subunit ribosomal RNA	18S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF01960	Crystal structure of Cycloheximide bound to the yeast 80S ribosome	X-ray diffraction	2.9	1795	2014-10-22
42	8T3D\|1\|B5	Small subunit ribosomal RNA	18S rRNA	Saccharomyces cerevisiae	Eukarya	RF01960	Hypomethylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, and sordarin, Structure III	Electron microscopy	2.95	1757	2024-12-11
43	8ZGR\|1\|S2	Small subunit ribosomal RNA	chain 2 18S rRNA (1800-MER)	Saccharomyces cerevisiae S288C	Eukarya	RF01960	80S ribosome with A/A tRNA and mRNA of WNV	Electron microscopy	2.7	1771	2025-05-21
44	4U4R\|1\|2	Small subunit ribosomal RNA	18S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF01960	Crystal structure of Lactimidomycin bound to the yeast 80S ribosome	X-ray diffraction	2.8	1750	2014-10-22
45	8K82\|1\|C2	Small subunit ribosomal RNA	18S rRNA	Saccharomyces cerevisiae	Eukarya	RF01960	Cryo-EM structure of the yeast 80S ribosome with tigecycline, Not5 and P-site tRNA	Electron microscopy	3	1771	2024-07-10
46	7A1G\|1\|2	Small subunit ribosomal RNA	18S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF01960	Structure of a crosslinked yeast ABCE1-bound 43S pre-initiation complex	Electron microscopy	3	1771	2020-10-14
47	6ZVI\|1\|h	Small subunit ribosomal RNA	18S rRNA	Saccharomyces cerevisiae	Eukarya	RF01960	Mbf1-ribosome complex	Electron microscopy	3	1758	2020-09-09
48	8CF5\|1\|c	Small subunit ribosomal RNA	18S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF01960	Translocation intermediate 1 (TI-1) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarin	Electron microscopy	2.71	1604	2023-09-20
49	8CDL\|1\|c	Small subunit ribosomal RNA	18S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF01960	80S S. cerevisiae ribosome with ligands in hybrid-2 pre-translocation (PRE-H2) complex	Electron microscopy	2.72	1604	2023-09-20
50	8CAH\|1\|2	Small subunit ribosomal RNA	18S ribosomal RNA	Saccharomyces cerevisiae W303	Eukarya	RF01960	Cryo-EM structure of native Otu2-bound ubiquitinated 43S pre-initiation complex	Electron microscopy	3	1745	2023-05-24
51	4U3U\|1\|2	Small subunit ribosomal RNA	18S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF01960	Crystal structure of Cycloheximide bound to the yeast 80S ribosome	X-ray diffraction	2.9	1750	2014-10-22
52	8ZGY\|1\|S2	Small subunit ribosomal RNA	chain 2 18S rRNA (1799-MER)	Saccharomyces cerevisiae S288C	Eukarya	RF01960	80S ribosome with P/E tRNA and mRNA of WNV	Electron microscopy	2.8	1771	2025-05-21
53	4U3M\|1\|6	Small subunit ribosomal RNA	18S rRNA	Saccharomyces cerevisiae	Eukarya	RF01960	Crystal structure of Anisomycin bound to the yeast 80S ribosome	X-ray diffraction	3	1795	2014-10-22
54	4U4Q\|1\|6	Small subunit ribosomal RNA	18S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF01960	Crystal structure of Homoharringtonine bound to the yeast 80S ribosome	X-ray diffraction	3	1795	2014-10-22
55	4U4U\|1\|6	Small subunit ribosomal RNA	18S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF01960	Crystal structure of Lycorine bound to the yeast 80S ribosome	X-ray diffraction	3	1795	2014-10-22
56	4U52\|1\|6	Small subunit ribosomal RNA	18S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF01960	Crystal structure of Nagilactone C bound to the yeast 80S ribosome	X-ray diffraction	3	1795	2014-10-22
57	4U3M\|1\|2	Small subunit ribosomal RNA	18S rRNA	Saccharomyces cerevisiae	Eukarya	RF01960	Crystal structure of Anisomycin bound to the yeast 80S ribosome	X-ray diffraction	3	1750	2014-10-22
58	8C01\|1\|2	Small subunit ribosomal RNA	18S rRNA precursor	Saccharomyces cerevisiae	Eukarya	RF01960	Enp1TAP_A population of yeast small ribosomal subunit precursors	Electron microscopy	2.7	1545	2022-12-28
59	4U52\|1\|2	Small subunit ribosomal RNA	18S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF01960	Crystal structure of Nagilactone C bound to the yeast 80S ribosome	X-ray diffraction	3	1750	2014-10-22
60	4U4U\|1\|2	Small subunit ribosomal RNA	18S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF01960	Crystal structure of Lycorine bound to the yeast 80S ribosome	X-ray diffraction	3	1750	2014-10-22
61	4U4Q\|1\|2	Small subunit ribosomal RNA	18S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF01960	Crystal structure of Homoharringtonine bound to the yeast 80S ribosome	X-ray diffraction	3	1750	2014-10-22
62	8EVT\|1\|B5	Small subunit ribosomal RNA	18S rRNA	Saccharomyces cerevisiae	Eukarya	RF01960	Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES) refined against a composite map	Electron microscopy	2.2	1173	2023-09-06
63	8C00\|1\|2	Small subunit ribosomal RNA	18S rRNA precursor	Saccharomyces cerevisiae	Eukarya	RF01960	Enp1TAP-S21_A population of yeast small ribosomal subunit precursors depleted of rpS21/eS21	Electron microscopy	2.9	1425	2022-12-28
64	8EVS\|1\|B5	Small subunit ribosomal RNA	18S rRNA	Saccharomyces cerevisiae	Eukarya	RF01960	Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2 and GDP, Structure II	Electron microscopy	2.62	1173	2023-09-06
65	8EVR\|1\|B5	Small subunit ribosomal RNA	18S rRNA	Saccharomyces cerevisiae	Eukarya	RF01960	Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, and sordarin, Structure II	Electron microscopy	2.87	1173	2023-09-06
66	8C83\|1\|2	Small subunit ribosomal RNA	18S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF01960	Cryo-EM structure of in vitro reconstituted Otu2-bound Ub-40S complex	Electron microscopy	3	1177	2023-05-24

Release history

Release	3.389	3.390	3.391
Date	2025-05-28	2025-06-04	2025-06-11

Parents

This class	Parent classes	Release id	Intersection	Added to this class	Only in parent

Children

This class	Descendant classes	Release id	Intersection	Only in this class	Added to child

Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.

Filter:

Showing 1 to 66 of 66 entries

#S	PDB	Title	Method	Resolution	#NTs
1	8PNN\|1\|sR	80S yeast ribosome in complex with Bromolissoclimide	X-RAY DIFFRACTION	2.9	1783
2	8P9A\|1\|sR	80S yeast ribosome in complex with Methyllissoclimide	X-RAY DIFFRACTION	2.9	1783
3	5TBW\|1\|sR	Crystal structure of chlorolissoclimide bound to the yeast 80S ribosome	X-RAY DIFFRACTION	3	1783
4	4U3M\|1\|6	Crystal structure of Anisomycin bound to the yeast 80S ribosome	X-RAY DIFFRACTION	3	1795
5	4U3U\|1\|6	Crystal structure of Cycloheximide bound to the yeast 80S ribosome	X-RAY DIFFRACTION	2.9	1795
6	4U4R\|1\|6	Crystal structure of Lactimidomycin bound to the yeast 80S ribosome	X-RAY DIFFRACTION	2.8	1795
7	4U52\|1\|6	Crystal structure of Nagilactone C bound to the yeast 80S ribosome	X-RAY DIFFRACTION	3	1795
8	4U4Q\|1\|6	Crystal structure of Homoharringtonine bound to the yeast 80S ribosome	X-RAY DIFFRACTION	3	1795
9	4U4U\|1\|6	Crystal structure of Lycorine bound to the yeast 80S ribosome	X-RAY DIFFRACTION	3	1795
10	4V88\|1\|A6	The structure of the eukaryotic ribosome at 3.0 A resolution.	X-RAY DIFFRACTION	3	1795
11	8CG8\|1\|c	Translocation intermediate 3 (TI-3) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarin	ELECTRON MICROSCOPY	2.57	1608
12	8CDR\|1\|c	Translocation intermediate 2 (TI-2) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarin	ELECTRON MICROSCOPY	2.04	1608
13	8CEH\|1\|c	Translocation intermediate 4 (TI-4) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarin	ELECTRON MICROSCOPY	2.05	1608
14	8CIV\|1\|c	Translocation intermediate 5 (TI-5) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarin	ELECTRON MICROSCOPY	2.47	1622
15	8EUB\|1\|B5	Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2 and GDP, Structure I	ELECTRON MICROSCOPY	2.52	1782
16	8EVQ\|1\|B5	Hypopseudouridylated Ribosome bound with TSV IRES, eEF2, GDP, and sordarin, Structure I	ELECTRON MICROSCOPY	2.72	1782
17	8T3A\|1\|B5	Hypomethylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, sordarin, and hibernating factor Los2	ELECTRON MICROSCOPY	2.86	1757
18	4U52\|1\|2	Crystal structure of Nagilactone C bound to the yeast 80S ribosome	X-RAY DIFFRACTION	3	1750
19	4U4Q\|1\|2	Crystal structure of Homoharringtonine bound to the yeast 80S ribosome	X-RAY DIFFRACTION	3	1750
20	4U4U\|1\|2	Crystal structure of Lycorine bound to the yeast 80S ribosome	X-RAY DIFFRACTION	3	1750
21	4V88\|1\|A2	The structure of the eukaryotic ribosome at 3.0 A resolution.	X-RAY DIFFRACTION	3	1781
22	4U3U\|1\|2	Crystal structure of Cycloheximide bound to the yeast 80S ribosome	X-RAY DIFFRACTION	2.9	1750
23	4U4R\|1\|2	Crystal structure of Lactimidomycin bound to the yeast 80S ribosome	X-RAY DIFFRACTION	2.8	1750
24	4U3M\|1\|2	Crystal structure of Anisomycin bound to the yeast 80S ribosome	X-RAY DIFFRACTION	3	1750
25	5TBW\|1\|A	Crystal structure of chlorolissoclimide bound to the yeast 80S ribosome	X-RAY DIFFRACTION	3	1781
26	8P9A\|1\|A	80S yeast ribosome in complex with Methyllissoclimide	X-RAY DIFFRACTION	2.9	1741
27	8PNN\|1\|A	80S yeast ribosome in complex with Bromolissoclimide	X-RAY DIFFRACTION	2.9	1722
28	8BN3\|1\|2	Yeast 80S, ES7s delta, eIF5A, Stm1 containing	ELECTRON MICROSCOPY	2.4	1737
29	8CAH\|1\|2	Cryo-EM structure of native Otu2-bound ubiquitinated 43S pre-initiation complex	ELECTRON MICROSCOPY	3	1745
30	7A1G\|1\|2	Structure of a crosslinked yeast ABCE1-bound 43S pre-initiation complex	ELECTRON MICROSCOPY	3	1771
31	7OSM\|1\|18S	Intermediate translocation complex of 80 S.cerevisiae ribosome with eEF2 and ligands	X-RAY DIFFRACTION	3	1732
32	8ZGR\|1\|S2	80S ribosome with A/A tRNA and mRNA of WNV	ELECTRON MICROSCOPY	2.7	1771
33	7MPJ\|1\|B5	Stm1 bound vacant 80S structure isolated from nop1-D243A	ELECTRON MICROSCOPY	2.7	1781
34	8T3D\|1\|B5	Hypomethylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, and sordarin, Structure III	ELECTRON MICROSCOPY	2.95	1757
35	8T30\|1\|B5	Hypomethylated yeast 80S bound with cycloheximide, unmodified U2921, mid rotated	ELECTRON MICROSCOPY	2.88	1782
36	8EWC\|1\|B5	Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), Structure II	ELECTRON MICROSCOPY	2.45	1782
37	8EVP\|1\|B5	Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), Structure I	ELECTRON MICROSCOPY	2.38	1782
38	8EVS\|1\|B5	Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2 and GDP, Structure II	ELECTRON MICROSCOPY	2.62	1173
39	8EVR\|1\|B5	Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, and sordarin, Structure II	ELECTRON MICROSCOPY	2.87	1173
40	8EVT\|1\|B5	Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES) refined against a composite map	ELECTRON MICROSCOPY	2.2	1173
41	8EWB\|1\|B5	Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2 and GDP, Structure III	ELECTRON MICROSCOPY	2.87	1782
42	8T2Y\|1\|B5	Hypomethylated yeast 80S bound with cycloheximide, P-site tRNA, and A-site tRNA, messenger RNA, PRE	ELECTRON MICROSCOPY	2.2	1782
43	8T2X\|1\|B5	Hypomethylated yeast 80S bound with cycloheximide, P-site tRNA, A-site tRNA, messenger RNA and eIF5A, PRE	ELECTRON MICROSCOPY	2.46	1782
44	8T2Z\|1\|B5	Hypomethylated yeast 80S bound with cycloheximide, P-site tRNA, and A-site tRNA, messenger RNA, POST	ELECTRON MICROSCOPY	2.4	1757
45	8ZHC\|1\|S2	pre-frameshift complex of yeast 80S ribosome with eRF1 and mRNA of WNV	ELECTRON MICROSCOPY	2.3	1771
46	8ZHB\|1\|S2	80S ribosome with A/A P/E tRNA and mRNA of WNV	ELECTRON MICROSCOPY	2.6	1771
47	8ZH3\|1\|S2	80S ribosome with A/P-P/E tRNA and mRNA of WNV	ELECTRON MICROSCOPY	2.7	1771
48	7ZW0\|1\|2	FAP-80S Complex - Rotated state	ELECTRON MICROSCOPY	2.4	1765
49	9F9S\|1\|S1	Yeast SDD1 Disome with Mbf1	ELECTRON MICROSCOPY	2.9	1771
50	6T4Q\|1\|C2	Structure of yeast 80S ribosome stalled on the CGA-CCG inhibitory codon combination.	ELECTRON MICROSCOPY	2.6	1771
51	6SNT\|1\|2	Yeast 80S ribosome stalled on SDD1 mRNA.	ELECTRON MICROSCOPY	2.8	1771
52	6TB3\|1\|2	yeast 80S ribosome in complex with the Not5 subunit of the CCR4-NOT complex	ELECTRON MICROSCOPY	2.8	1771
53	8K82\|1\|C2	Cryo-EM structure of the yeast 80S ribosome with tigecycline, Not5 and P-site tRNA	ELECTRON MICROSCOPY	3	1771
54	8C83\|1\|2	Cryo-EM structure of in vitro reconstituted Otu2-bound Ub-40S complex	ELECTRON MICROSCOPY	3	1177
55	8ZGY\|1\|S2	80S ribosome with P/E tRNA and mRNA of WNV	ELECTRON MICROSCOPY	2.8	1771
56	7OSA\|1\|18S	Pre-translocation complex of 80 S.cerevisiae ribosome with eEF2 and ligands	X-RAY DIFFRACTION	3	1717
57	6WOO\|1\|2	CryoEM structure of yeast 80S ribosome with Met-tRNAiMet, eIF5B, and GDP	ELECTRON MICROSCOPY	2.9	1780
58	8CGN\|1\|c	Non-rotated 80S S. cerevisiae ribosome with ligands	ELECTRON MICROSCOPY	2.28	1624
59	8CF5\|1\|c	Translocation intermediate 1 (TI-1) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarin	ELECTRON MICROSCOPY	2.71	1604
60	8CCS\|1\|c	80S S. cerevisiae ribosome with ligands in hybrid-1 pre-translocation (PRE-H1) complex	ELECTRON MICROSCOPY	1.97	1604
61	8CDL\|1\|c	80S S. cerevisiae ribosome with ligands in hybrid-2 pre-translocation (PRE-H2) complex	ELECTRON MICROSCOPY	2.72	1604
62	7ZUX\|1\|2	Collided ribosome in a disome unit from S. cerevisiae	ELECTRON MICROSCOPY	2.5	1769
63	9F9S\|1\|R1	Yeast SDD1 Disome with Mbf1	ELECTRON MICROSCOPY	2.9	1758
64	6ZVI\|1\|h	Mbf1-ribosome complex	ELECTRON MICROSCOPY	3	1758
65	8C01\|1\|2	Enp1TAP_A population of yeast small ribosomal subunit precursors	ELECTRON MICROSCOPY	2.7	1545
66	8C00\|1\|2	Enp1TAP-S21_A population of yeast small ribosomal subunit precursors depleted of rpS21/eS21	ELECTRON MICROSCOPY	2.9	1425

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.

loadScript https://rna.bgsu.edu/rna3dhub//js/jsmol/j2s//core/package.js

loadScript https://rna.bgsu.edu/rna3dhub//js/jsmol/j2s//core/corejmol.z.js

JSmol exec jmolApplet0 start applet null

Jmol JavaScript applet jmolApplet0__170743340771055__ initializing

Jmol getValue debug null

Jmol getValue logLevel null

Jmol getValue allowjavascript null

AppletRegistry.checkIn(jmolApplet0__170743340771055__)

vwrOptions:

{ "name":"jmolApplet0","applet":true,"documentBase":"https://rna.bgsu.edu/rna3dhub/nrlist/view/NR_3.0_03510.67","platform":"J.awtjs2d.Platform","fullName":"jmolApplet0__170743340771055__","codePath":"https://rna.bgsu.edu/rna3dhub//js/jsmol/j2s//","display":"jmolApplet0_canvas2d","signedApplet":"true","appletReadyCallback":"Jmol._readyCallback","statusListener":"[J.appletjs.Jmol object]","syncId":"170743340771055","bgcolor":"white" }

setting document base to "https://rna.bgsu.edu/rna3dhub/nrlist/view/NR_3.0_03510.67"

Jmol Version: 14.4.4_2016.04.25 2016-04-26 17:41

java.vendor: Java2Script (HTML5)

java.version: 2016-04-21 14:47:41 (JSmol/j2s)

os.name: Mozilla/5.0 AppleWebKit/537.36 (KHTML, like Gecko; compatible; ClaudeBot/1.0; +claudebot@anthropic.com)

Access: ALL

memory: 0.0/0.0

processors available: 1

useCommandThread: false

appletId:jmolApplet0 (signed)

loadScript https://rna.bgsu.edu/rna3dhub//js/jsmol/j2s//core/corescript.z.js

Jmol getValue emulate null

defaults = "Jmol"

Jmol getValue boxbgcolor null

Jmol getValue bgcolor white

backgroundColor = "white"

Jmol getValue ANIMFRAMECallback null

Jmol getValue APPLETREADYCallback Jmol._readyCallback

APPLETREADYCallback = "Jmol._readyCallback"

callback set for APPLETREADYCallback Jmol._readyCallback APPLETREADY

Jmol getValue ATOMMOVEDCallback null

Jmol getValue CLICKCallback null

Jmol getValue DRAGDROPCallback null

Jmol getValue ECHOCallback null

Jmol getValue ERRORCallback null

Jmol getValue EVALCallback null

Jmol getValue HOVERCallback null

Jmol getValue IMAGECallback null

Jmol getValue LOADSTRUCTCallback null

Jmol getValue MEASURECallback null

Jmol getValue MESSAGECallback null

Jmol getValue MINIMIZATIONCallback null

Jmol getValue SERVICECallback null

Jmol getValue PICKCallback null

Jmol getValue RESIZECallback null

Jmol getValue SCRIPTCallback null

Jmol getValue SYNCCallback null

Jmol getValue STRUCTUREMODIFIEDCallback null

Jmol getValue doTranslate null

language=en_US

Jmol getValue popupMenu null

Jmol getValue script null

Jmol getValue loadInline null

Jmol getValue load null

Jmol applet jmolApplet0__170743340771055__ ready

script 1 started

loadScript https://rna.bgsu.edu/rna3dhub//js/jsmol/j2s//core/coretext.z.js

Script completed

Jmol script terminated

script 2 started

Script completed

Jmol script terminated

Coloring options: Nucleotide numbers

Equivalence class NR_3.0_03510.67 Obsolete

Release history

Parents

Children