RNA 3D Hub //

Equivalence class NR_3.0_10157.7 Obsolete

#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodRes. ÅDate
14U26|1|BB (rep)5S ribosomal RNA5S rRNAEscherichia coliBacteriaRF00001Crystal structure of the E. coli ribosome bound to dalfopristin and quinupristin.X-ray diffraction2.82014-07-30
25AFI|1|B5S ribosomal RNA5S ribosomal RNAEscherichia coliBacteriaRF000012.9A Structure of E. coli ribosome-EF-TU complex by cs-corrected cryo-EMElectron microscopy2.92015-03-11
34U20|1|DB5S ribosomal RNA5S rRNAEscherichia coliBacteriaRF00001Crystal structure of the E. coli ribosome bound to flopristin.X-ray diffraction2.92014-07-30
44U27|1|BB5S ribosomal RNA5S rRNAEscherichia coliBacteriaRF00001Crystal structure of the E. coli ribosome bound to flopristin and linopristin.X-ray diffraction2.82014-07-30
54U24|1|BB5S ribosomal RNA5S rRNAEscherichia coliBacteriaRF00001Crystal structure of the E. coli ribosome bound to dalfopristin.X-ray diffraction2.92014-07-30
64YBB|1|DB5S ribosomal RNA5S rRNAEscherichia coliBacteriaRF00001High-resolution structure of the Escherichia coli ribosomeX-ray diffraction2.12015-03-18
74U1U|1|DB5S ribosomal RNA5S rRNAEscherichia coliBacteriaRF00001Crystal structure of the E. coli ribosome bound to quinupristin.X-ray diffraction2.952014-07-30
84U25|1|BB5S ribosomal RNA5S rRNAEscherichia coliBacteriaRF00001Crystal structure of the E. coli ribosome bound to virginiamycin M1.X-ray diffraction2.92014-07-30
94U1V|1|BB5S ribosomal RNA5S rRNAEscherichia coliBacteriaRF00001Crystal structure of the E. coli ribosome bound to linopristin.X-ray diffraction32014-07-30
104U1U|1|BB5S ribosomal RNA5S rRNAEscherichia coliBacteriaRF00001Crystal structure of the E. coli ribosome bound to quinupristin.X-ray diffraction2.952014-07-30
114U20|1|BB5S ribosomal RNA5S rRNAEscherichia coliBacteriaRF00001Crystal structure of the E. coli ribosome bound to flopristin.X-ray diffraction2.92014-07-30
124V9D|1|CB5S ribosomal RNA5S rRNAEscherichia coliBacteriaRF00001Structures of the bacterial ribosome in classical and hybrid states of tRNA bindingX-ray diffraction32014-07-09
134V9P|1|CB5S ribosomal RNA5S rRNAEscherichia coliBacteriaRF00001Control of ribosomal subunit rotation by elongation factor GX-ray diffraction2.92014-07-09
144YBB|1|CB5S ribosomal RNA5S rRNAEscherichia coliBacteriaRF00001High-resolution structure of the Escherichia coli ribosomeX-ray diffraction2.12015-03-18
154U27|1|DB5S ribosomal RNA5S rRNAEscherichia coliBacteriaRF00001Crystal structure of the E. coli ribosome bound to flopristin and linopristin.X-ray diffraction2.82014-07-30
164U25|1|DB5S ribosomal RNA5S rRNAEscherichia coliBacteriaRF00001Crystal structure of the E. coli ribosome bound to virginiamycin M1.X-ray diffraction2.92014-07-30
174V9D|1|DB5S ribosomal RNA5S rRNAEscherichia coliBacteriaRF00001Structures of the bacterial ribosome in classical and hybrid states of tRNA bindingX-ray diffraction32014-07-09
184V9O|1|AB5S ribosomal RNA5S rRNAEscherichia coliBacteriaRF00001Control of ribosomal subunit rotation by elongation factor GX-ray diffraction2.92014-07-09
194U24|1|DB5S ribosomal RNA5S rRNAEscherichia coliBacteriaRF00001Crystal structure of the E. coli ribosome bound to dalfopristin.X-ray diffraction2.92014-07-30
204U1V|1|DB5S ribosomal RNA5S rRNAEscherichia coliBacteriaRF00001Crystal structure of the E. coli ribosome bound to linopristin.X-ray diffraction32014-07-30
214V9O|1|CB5S ribosomal RNA5S rRNAEscherichia coliBacteriaRF00001Control of ribosomal subunit rotation by elongation factor GX-ray diffraction2.92014-07-09
224U26|1|DB5S ribosomal RNA5S rRNAEscherichia coliBacteriaRF00001Crystal structure of the E. coli ribosome bound to dalfopristin and quinupristin.X-ray diffraction2.82014-07-30
234V9P|1|AB5S ribosomal RNA5S rRNAEscherichia coliBacteriaRF00001Control of ribosomal subunit rotation by elongation factor GX-ray diffraction2.92014-07-09
244V9P|1|EB5S ribosomal RNA5S rRNAEscherichia coliBacteriaRF00001Control of ribosomal subunit rotation by elongation factor GX-ray diffraction2.92014-07-09
254V9O|1|EB5S ribosomal RNA5S rRNAEscherichia coliBacteriaRF00001Control of ribosomal subunit rotation by elongation factor GX-ray diffraction2.92014-07-09
264V9O|1|GB5S ribosomal RNA5S rRNAEscherichia coliBacteriaRF00001Control of ribosomal subunit rotation by elongation factor GX-ray diffraction2.92014-07-09
274V9P|1|GB5S ribosomal RNA5S rRNAEscherichia coliBacteriaRF00001Control of ribosomal subunit rotation by elongation factor GX-ray diffraction2.92014-07-09

Release history

Release2.302.312.322.332.34
Date2015-07-032015-07-102015-07-172015-07-242015-07-31

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent
NR_3.0_10157.7NR_all_10157.62.30(27) 4U1U|1|BB, 4U1U|1|DB, 4U1V|1|BB, 4U1V|1|DB, 4U20|1|BB, 4U20|1|DB, 4U24|1|BB, 4U24|1|DB, 4U25|1|BB, 4U25|1|DB, 4U26|1|BB, 4U26|1|DB, 4U27|1|BB, 4U27|1|DB, 4V9D|1|CB, 4V9D|1|DB, 4V9O|1|AB, 4V9O|1|CB, 4V9O|1|EB, 4V9O|1|GB, 4V9P|1|AB, 4V9P|1|CB, 4V9P|1|EB, 4V9P|1|GB, 4YBB|1|CB, 4YBB|1|DB, 5AFI|1|B(0) (93) 1C2X|1|C, 2J28|1|A, 2RDO|1|A, 3BBX|1|A, 3J5L|1|B, 3J7Z|1|B, 3J8G|1|A, 3J9Y|1|B, 4CSU|1|A, 4UY8|1|B, 4V47|1|A9, 4V48|1|A9, 4V4H|1|BA, 4V4H|1|DA, 4V4Q|1|BA, 4V4Q|1|DA, 4V4V|1|B9, 4V4W|1|B9, 4V50|1|BA, 4V50|1|DA, 4V52|1|BA, 4V52|1|DA, 4V53|1|BA, 4V53|1|DA, 4V54|1|BA, 4V54|1|DA, 4V55|1|BA, 4V55|1|DA, 4V56|1|BA, 4V56|1|DA, 4V57|1|BA, 4V57|1|DA, 4V5B|1|AA, 4V5B|1|CA, 4V5H|1|BA, 4V5Y|1|BA, 4V5Y|1|DA, 4V64|1|BA, 4V64|1|DA, 4V65|1|BA, 4V66|1|BA, 4V69|1|BA, 4V6C|1|BB, 4V6C|1|DB, 4V6D|1|BB, 4V6D|1|DB, 4V6E|1|BB, 4V6E|1|DB, 4V6K|1|AA, 4V6L|1|BA, 4V6M|1|B7, 4V6N|1|AA, 4V6O|1|BA, 4V6P|1|BA, 4V6Q|1|BA, 4V6R|1|BA, 4V6S|1|AA, 4V6T|1|BB, 4V6V|1|Ba, 4V6Y|1|BB, 4V6Z|1|BB, 4V70|1|BB, 4V71|1|BB, 4V72|1|BB, 4V73|1|BB, 4V74|1|BB, 4V75|1|BB, 4V76|1|BB, 4V77|1|BB, 4V78|1|BB, 4V79|1|BB, 4V7A|1|BB, 4V7B|1|BB, 4V7C|1|BB, 4V7D|1|AB, 4V7I|1|A7, 4V7S|1|BB, 4V7S|1|DB, 4V7T|1|BB, 4V7T|1|DB, 4V7U|1|BB, 4V7U|1|DB, 4V7V|1|BB, 4V7V|1|DB, 4V85|1|BB, 4V89|1|BB, 4V9C|1|BB, 4V9C|1|DB, 4WF1|1|BB, 4WF1|1|DB, 4WWW|1|RB, 4WWW|1|YB, 5AKA|1|A

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child

Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.

#SViewPDBTitleMethodResolutionLength
15AFI|1|B2.9A Structure of E. coli ribosome-EF-TU complex by cs-corrected cryo-EMELECTRON MICROSCOPY2.9120
24YBB|1|DBHigh-resolution structure of the Escherichia coli ribosomeX-RAY DIFFRACTION2.1120
34U1V|1|BBCrystal structure of the E. coli ribosome bound to linopristin.X-RAY DIFFRACTION3119
44U27|1|BBCrystal structure of the E. coli ribosome bound to flopristin and linopristin.X-RAY DIFFRACTION2.8119
54U25|1|BBCrystal structure of the E. coli ribosome bound to virginiamycin M1.X-RAY DIFFRACTION2.9119
64U24|1|BBCrystal structure of the E. coli ribosome bound to dalfopristin.X-RAY DIFFRACTION2.9119
74U26|1|BBCrystal structure of the E. coli ribosome bound to dalfopristin and quinupristin.X-RAY DIFFRACTION2.8119
84U20|1|BBCrystal structure of the E. coli ribosome bound to flopristin.X-RAY DIFFRACTION2.9119
94U1U|1|BBCrystal structure of the E. coli ribosome bound to quinupristin.X-RAY DIFFRACTION2.95119
104V9D|1|CBStructures of the bacterial ribosome in classical and hybrid states of tRNA bindingX-RAY DIFFRACTION3119
114V9O|1|ABControl of ribosomal subunit rotation by elongation factor GX-RAY DIFFRACTION2.9118
124V9O|1|CBControl of ribosomal subunit rotation by elongation factor GX-RAY DIFFRACTION2.9118
134V9P|1|CBControl of ribosomal subunit rotation by elongation factor GX-RAY DIFFRACTION2.9118
144V9P|1|ABControl of ribosomal subunit rotation by elongation factor GX-RAY DIFFRACTION2.9118
154V9P|1|EBControl of ribosomal subunit rotation by elongation factor GX-RAY DIFFRACTION2.9118
164V9O|1|EBControl of ribosomal subunit rotation by elongation factor GX-RAY DIFFRACTION2.9118
174YBB|1|CBHigh-resolution structure of the Escherichia coli ribosomeX-RAY DIFFRACTION2.1118
184U26|1|DBCrystal structure of the E. coli ribosome bound to dalfopristin and quinupristin.X-RAY DIFFRACTION2.8118
194U24|1|DBCrystal structure of the E. coli ribosome bound to dalfopristin.X-RAY DIFFRACTION2.9118
204U25|1|DBCrystal structure of the E. coli ribosome bound to virginiamycin M1.X-RAY DIFFRACTION2.9118
214U27|1|DBCrystal structure of the E. coli ribosome bound to flopristin and linopristin.X-RAY DIFFRACTION2.8118
224U1V|1|DBCrystal structure of the E. coli ribosome bound to linopristin.X-RAY DIFFRACTION3118
234U20|1|DBCrystal structure of the E. coli ribosome bound to flopristin.X-RAY DIFFRACTION2.9118
244U1U|1|DBCrystal structure of the E. coli ribosome bound to quinupristin.X-RAY DIFFRACTION2.95118
254V9D|1|DBStructures of the bacterial ribosome in classical and hybrid states of tRNA bindingX-RAY DIFFRACTION3118
264V9P|1|GBControl of ribosomal subunit rotation by elongation factor GX-RAY DIFFRACTION2.9118
274V9O|1|GBControl of ribosomal subunit rotation by elongation factor GX-RAY DIFFRACTION2.9118

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.


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