#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodRes. ÅDate
15TBW|1|AS (rep)5S ribosomal RNA5S ribosomal RNASaccharomyces cerevisiaeEukaryaRF00001Crystal structure of chlorolissoclimide bound to the yeast 80S ribosomeX-ray diffraction32017-07-26
25TBW|1|35S ribosomal RNA5S ribosomal RNASaccharomyces cerevisiaeEukaryaRF00001Crystal structure of chlorolissoclimide bound to the yeast 80S ribosomeX-ray diffraction32017-07-26
34V88|1|A35S ribosomal RNA5S rRNASaccharomyces cerevisiaeEukaryaRF00001The structure of the eukaryotic ribosome at 3.0 A resolution.X-ray diffraction32014-07-09
44V88|1|A75S ribosomal RNA5S rRNASaccharomyces cerevisiaeEukaryaRF00001The structure of the eukaryotic ribosome at 3.0 A resolution.X-ray diffraction32014-07-09
57OSA|1|AB5S ribosomal RNA5SSaccharomyces cerevisiaeEukaryaRF00001Pre-translocation complex of 80 S.cerevisiae ribosome with eEF2 and ligandsX-ray diffraction32021-12-08
67OSM|1|AB5S ribosomal RNA5S rRNASaccharomyces cerevisiaeEukaryaRF00001Intermediate translocation complex of 80 S.cerevisiae ribosome with eEF2 and ligandsX-ray diffraction32021-12-08
78CCS|1|BB5S ribosomal RNA5S ribosomal RNASaccharomyces cerevisiaeEukaryaRF0000180S S. cerevisiae ribosome with ligands in hybrid-1 pre-translocation (PRE-H1) complexElectron microscopy1.972023-09-20
88CDR|1|BB5S ribosomal RNA5S ribosomal RNASaccharomyces cerevisiaeEukaryaRF00001Translocation intermediate 2 (TI-2) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarinElectron microscopy2.042023-09-20
98CEH|1|BB5S ribosomal RNA5S ribosomal RNASaccharomyces cerevisiaeEukaryaRF00001Translocation intermediate 4 (TI-4) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarinElectron microscopy2.052023-09-20
108EVT|1|A35S ribosomal RNA5s rRNASaccharomyces cerevisiaeEukaryaRF00001Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES) refined against a composite mapElectron microscopy2.22023-09-06
118CGN|1|BB5S ribosomal RNA5S ribosomal RNASaccharomyces cerevisiaeEukaryaRF00001Non-rotated 80S S. cerevisiae ribosome with ligandsElectron microscopy2.282023-09-20
127UOO|1|35S ribosomal RNA5S rRNASaccharomyces cerevisiae BY4741EukaryaRF00001Nucleoplasmic pre-60S intermediate of the Nog2 containing pre-rotation stateElectron microscopy2.342023-03-15
138EVP|1|A35S ribosomal RNA5s rRNASaccharomyces cerevisiaeEukaryaRF00001Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), Structure IElectron microscopy2.382023-09-06
147V08|1|35S ribosomal RNA5S rRNASaccharomyces cerevisiae BY4741EukaryaRF00001Nucleoplasmic pre-60S intermediate of the Nog2 containing pre-rotation state from a Spb1 D52A suppressor 3 strainElectron microscopy2.362023-03-15
157ZW0|1|LC5S ribosomal RNA5S ribosomal RNA (RDN5-1)Saccharomyces cerevisiae W303EukaryaRF00001FAP-80S Complex - Rotated stateElectron microscopy2.42022-10-05
168AGX|1|h5S ribosomal RNA5S rRNASaccharomyces cerevisiaeEukaryaRF00001Yeast RQC complex in state with the RING domain of Ltn1 in the IN positionElectron microscopy2.42023-03-08
178BN3|1|35S ribosomal RNA5S ribosomal RNASaccharomyces cerevisiaeEukaryaRF00001Yeast 80S, ES7s delta, eIF5A, Stm1 containingElectron microscopy2.42024-01-10
187TOP|1|A5S5S ribosomal RNA5S rRNASaccharomyces cerevisiaeEukaryaRF00001Yeast 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein PR20Electron microscopy2.42022-05-25
198EWC|1|A35S ribosomal RNA5s rRNASaccharomyces cerevisiaeEukaryaRF00001Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), Structure IIElectron microscopy2.452023-09-06
207UQB|1|35S ribosomal RNA5S rRNASaccharomyces cerevisiae BY4741EukaryaRF00001Nucleoplasmic pre-60S intermediate of the Nog2 containing pre-rotation state from a SPB1-D52A strain with AlF4Electron microscopy2.432023-03-15
218CIV|1|BB5S ribosomal RNA5S ribosomal RNASaccharomyces cerevisiaeEukaryaRF00001Translocation intermediate 5 (TI-5) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarinElectron microscopy2.472023-09-20
227UQZ|1|35S ribosomal RNA5S rRNASaccharomyces cerevisiae BY4741EukaryaRF00001Nucleoplasmic pre-60S intermediate of the Nog2 containing pre-rotation state from a SPB1 D52A strainElectron microscopy2.442023-03-15
237ZUX|1|45S ribosomal RNA5S ribosomal RNASaccharomyces cerevisiaeEukaryaRF00001Collided ribosome in a disome unit from S. cerevisiaeElectron microscopy2.52023-02-22
248AAF|1|h5S ribosomal RNA5S rRNASaccharomyces cerevisiaeEukaryaRF00001Yeast RQC complex in state GElectron microscopy2.52023-03-08
258EUB|1|A35S ribosomal RNA5S rRNASaccharomyces cerevisiaeEukaryaRF00001Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2 and GDP, Structure IElectron microscopy2.522023-09-06
268CG8|1|BB5S ribosomal RNA5S ribosomal RNASaccharomyces cerevisiaeEukaryaRF00001Translocation intermediate 3 (TI-3) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarinElectron microscopy2.572023-09-20
276T4Q|1|C45S ribosomal RNA5S rRNASaccharomyces cerevisiaeEukaryaRF00001Structure of yeast 80S ribosome stalled on the CGA-CCG inhibitory codon combination.Electron microscopy2.62019-12-25
288AGW|1|h5S ribosomal RNA5S rRNASaccharomyces cerevisiaeEukaryaRF00001Yeast RQC complex in state DElectron microscopy2.62023-03-08
298AGT|1|h5S ribosomal RNA5S rRNASaccharomyces cerevisiaeEukaryaRF00001Yeast RQC complex in state FElectron microscopy2.62023-03-08
308AGV|1|h5S ribosomal RNA5S rRNASaccharomyces cerevisiaeEukaryaRF00001Yeast RQC complex in state HElectron microscopy2.62023-03-08
318AGZ|1|h5S ribosomal RNA5S rRNASaccharomyces cerevisiaeEukaryaRF00001Yeast RQC complex in state with the RING domain of Ltn1 in the OUT positionElectron microscopy2.62023-03-08
328EVS|1|A35S ribosomal RNA5s rRNASaccharomyces cerevisiaeEukaryaRF00001Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2 and GDP, Structure IIElectron microscopy2.622023-09-06
338HFR|1|2f5S ribosomal RNA5S ribosomal RNASaccharomyces cerevisiae S288CEukaryaRF00001NPC-trapped pre-60S particleElectron microscopy2.642023-04-12
348AGU|1|h5S ribosomal RNA5S rRNASaccharomyces cerevisiaeEukaryaRF00001Yeast RQC complex in state EElectron microscopy2.72023-03-08
358CF5|1|BB5S ribosomal RNA5S ribosomal RNASaccharomyces cerevisiaeEukaryaRF00001Translocation intermediate 1 (TI-1) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarinElectron microscopy2.712023-09-20
368EVQ|1|A35S ribosomal RNA5s rRNASaccharomyces cerevisiaeEukaryaRF00001Hypopseudouridylated Ribosome bound with TSV IRES, eEF2, GDP, and sordarin, Structure IElectron microscopy2.722023-09-06
378CDL|1|BB5S ribosomal RNA5S ribosomal RNASaccharomyces cerevisiaeEukaryaRF0000180S S. cerevisiae ribosome with ligands in hybrid-2 pre-translocation (PRE-H2) complexElectron microscopy2.722023-09-20
387TOO|1|A5S5S ribosomal RNA5S rRNASaccharomyces cerevisiaeEukaryaRF00001Yeast 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein GR20Electron microscopy2.72022-05-25
397MPJ|1|A35S ribosomal RNA5S rRNASaccharomyces cerevisiaeEukaryaRF00001Stm1 bound vacant 80S structure isolated from nop1-D243AElectron microscopy2.72022-05-11
406TB3|1|BR5S ribosomal RNA5S rRNASaccharomyces cerevisiaeEukaryaRF00001yeast 80S ribosome in complex with the Not5 subunit of the CCR4-NOT complexElectron microscopy2.82020-04-22
416SNT|1|45S ribosomal RNA5S rRNASaccharomyces cerevisiaeEukaryaRF00001Yeast 80S ribosome stalled on SDD1 mRNA.Electron microscopy2.82020-03-04
428EWB|1|A35S ribosomal RNA5s rRNASaccharomyces cerevisiaeEukaryaRF00001Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2 and GDP, Structure IIIElectron microscopy2.872023-09-06
438EVR|1|A35S ribosomal RNA5s rRNASaccharomyces cerevisiaeEukaryaRF00001Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, and sordarin, Structure IIElectron microscopy2.872023-09-06
447AZY|1|F5S ribosomal RNA5S ribosomal RNASaccharomyces cerevisiae S288CEukaryaRF00001Context-specific inhibition of eukaryotic translation by macrolide antibioticsElectron microscopy2.8772021-05-19
454U4R|1|35S ribosomal RNA5S ribosomal RNASaccharomyces cerevisiaeEukaryaRF00001Crystal structure of Lactimidomycin bound to the yeast 80S ribosomeX-ray diffraction2.82014-10-22
464U3U|1|75S ribosomal RNA5S ribosomal RNASaccharomyces cerevisiaeEukaryaRF00001Crystal structure of Cycloheximide bound to the yeast 80S ribosomeX-ray diffraction2.92014-10-22
476WOO|1|75S ribosomal RNA5S ribosomal RNASaccharomyces cerevisiaeEukaryaRF00001CryoEM structure of yeast 80S ribosome with Met-tRNAiMet, eIF5B, and GDPElectron microscopy2.92020-09-23
487UG6|1|35S ribosomal RNA5S rRNASaccharomyces cerevisiae S288CEukaryaRF00001Cryo-EM structure of pre-60S ribosomal subunit, unmethylated G2922Electron microscopy2.92022-12-21
494U4R|1|75S ribosomal RNA5S ribosomal RNASaccharomyces cerevisiaeEukaryaRF00001Crystal structure of Lactimidomycin bound to the yeast 80S ribosomeX-ray diffraction2.82014-10-22
504U3U|1|35S ribosomal RNA5S ribosomal RNASaccharomyces cerevisiaeEukaryaRF00001Crystal structure of Cycloheximide bound to the yeast 80S ribosomeX-ray diffraction2.92014-10-22
514U4Q|1|75S ribosomal RNA5S ribosomal RNASaccharomyces cerevisiaeEukaryaRF00001Crystal structure of Homoharringtonine bound to the yeast 80S ribosomeX-ray diffraction32014-10-22
524U4Q|1|35S ribosomal RNA5S ribosomal RNASaccharomyces cerevisiaeEukaryaRF00001Crystal structure of Homoharringtonine bound to the yeast 80S ribosomeX-ray diffraction32014-10-22
534U3M|1|75S ribosomal RNA5.8s rRNASaccharomyces cerevisiaeEukaryaRF00001Crystal structure of Anisomycin bound to the yeast 80S ribosomeX-ray diffraction32014-10-22
544U52|1|75S ribosomal RNA5S ribosomal RNASaccharomyces cerevisiaeEukaryaRF00001Crystal structure of Nagilactone C bound to the yeast 80S ribosomeX-ray diffraction32014-10-22
554U3M|1|35S ribosomal RNA5.8s rRNASaccharomyces cerevisiaeEukaryaRF00001Crystal structure of Anisomycin bound to the yeast 80S ribosomeX-ray diffraction32014-10-22
564U4U|1|75S ribosomal RNA5S ribosomal RNASaccharomyces cerevisiaeEukaryaRF00001Crystal structure of Lycorine bound to the yeast 80S ribosomeX-ray diffraction32014-10-22
576YLG|1|35S ribosomal RNA5S rRNASaccharomyces cerevisiaeEukaryaRF00001Rix1-Rea1 pre-60S particle - 60S core, body 1 (rigid body refinement)Electron microscopy32020-07-29
584U52|1|35S ribosomal RNA5S ribosomal RNASaccharomyces cerevisiaeEukaryaRF00001Crystal structure of Nagilactone C bound to the yeast 80S ribosomeX-ray diffraction32014-10-22
594U4U|1|35S ribosomal RNA5S ribosomal RNASaccharomyces cerevisiaeEukaryaRF00001Crystal structure of Lycorine bound to the yeast 80S ribosomeX-ray diffraction32014-10-22

Release history

Release3.3213.3223.3233.3243.3253.3263.3273.3283.3293.3303.3313.3323.3333.3343.3353.3363.3373.338
Date2024-02-072024-02-142024-02-212024-02-282024-03-062024-03-132024-03-202024-03-272024-04-032024-04-102024-04-172024-04-242024-05-012024-05-082024-05-152024-05-222024-05-292024-06-05

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child

Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.

#SViewPDBTitleMethodResolutionLength
17UG6|1|3Cryo-EM structure of pre-60S ribosomal subunit, unmethylated G2922ELECTRON MICROSCOPY2.9121
28CDL|1|BB80S S. cerevisiae ribosome with ligands in hybrid-2 pre-translocation (PRE-H2) complexELECTRON MICROSCOPY2.72121
38CF5|1|BBTranslocation intermediate 1 (TI-1) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarinELECTRON MICROSCOPY2.71121
48CCS|1|BB80S S. cerevisiae ribosome with ligands in hybrid-1 pre-translocation (PRE-H1) complexELECTRON MICROSCOPY1.97121
58CEH|1|BBTranslocation intermediate 4 (TI-4) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarinELECTRON MICROSCOPY2.05121
68CDR|1|BBTranslocation intermediate 2 (TI-2) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarinELECTRON MICROSCOPY2.04121
78CIV|1|BBTranslocation intermediate 5 (TI-5) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarinELECTRON MICROSCOPY2.47121
88CGN|1|BBNon-rotated 80S S. cerevisiae ribosome with ligandsELECTRON MICROSCOPY2.28121
98CG8|1|BBTranslocation intermediate 3 (TI-3) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarinELECTRON MICROSCOPY2.57121
107OSM|1|ABIntermediate translocation complex of 80 S.cerevisiae ribosome with eEF2 and ligandsX-RAY DIFFRACTION3121
117OSA|1|ABPre-translocation complex of 80 S.cerevisiae ribosome with eEF2 and ligandsX-RAY DIFFRACTION3121
127ZUX|1|4Collided ribosome in a disome unit from S. cerevisiaeELECTRON MICROSCOPY2.5121
137TOO|1|A5SYeast 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein GR20ELECTRON MICROSCOPY2.7121
147TOP|1|A5SYeast 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein PR20ELECTRON MICROSCOPY2.4121
156T4Q|1|C4Structure of yeast 80S ribosome stalled on the CGA-CCG inhibitory codon combination.ELECTRON MICROSCOPY2.6121
166SNT|1|4Yeast 80S ribosome stalled on SDD1 mRNA.ELECTRON MICROSCOPY2.8121
176TB3|1|BRyeast 80S ribosome in complex with the Not5 subunit of the CCR4-NOT complexELECTRON MICROSCOPY2.8121
188AGW|1|hYeast RQC complex in state DELECTRON MICROSCOPY2.6121
198AGZ|1|hYeast RQC complex in state with the RING domain of Ltn1 in the OUT positionELECTRON MICROSCOPY2.6121
208AAF|1|hYeast RQC complex in state GELECTRON MICROSCOPY2.5121
218AGX|1|hYeast RQC complex in state with the RING domain of Ltn1 in the IN positionELECTRON MICROSCOPY2.4121
228AGT|1|hYeast RQC complex in state FELECTRON MICROSCOPY2.6121
238AGV|1|hYeast RQC complex in state HELECTRON MICROSCOPY2.6121
248AGU|1|hYeast RQC complex in state EELECTRON MICROSCOPY2.7121
257ZW0|1|LCFAP-80S Complex - Rotated stateELECTRON MICROSCOPY2.4121
268BN3|1|3Yeast 80S, ES7s delta, eIF5A, Stm1 containingELECTRON MICROSCOPY2.4121
275TBW|1|3Crystal structure of chlorolissoclimide bound to the yeast 80S ribosomeX-RAY DIFFRACTION3121
284V88|1|A3The structure of the eukaryotic ribosome at 3.0 A resolution.X-RAY DIFFRACTION3121
294U4R|1|3Crystal structure of Lactimidomycin bound to the yeast 80S ribosomeX-RAY DIFFRACTION2.8121
304U3U|1|3Crystal structure of Cycloheximide bound to the yeast 80S ribosomeX-RAY DIFFRACTION2.9121
314U3M|1|3Crystal structure of Anisomycin bound to the yeast 80S ribosomeX-RAY DIFFRACTION3121
324U4U|1|3Crystal structure of Lycorine bound to the yeast 80S ribosomeX-RAY DIFFRACTION3121
334U4Q|1|3Crystal structure of Homoharringtonine bound to the yeast 80S ribosomeX-RAY DIFFRACTION3121
344U52|1|3Crystal structure of Nagilactone C bound to the yeast 80S ribosomeX-RAY DIFFRACTION3121
355TBW|1|ASCrystal structure of chlorolissoclimide bound to the yeast 80S ribosomeX-RAY DIFFRACTION3121
364U52|1|7Crystal structure of Nagilactone C bound to the yeast 80S ribosomeX-RAY DIFFRACTION3121
374U4U|1|7Crystal structure of Lycorine bound to the yeast 80S ribosomeX-RAY DIFFRACTION3121
384U4Q|1|7Crystal structure of Homoharringtonine bound to the yeast 80S ribosomeX-RAY DIFFRACTION3121
394U3M|1|7Crystal structure of Anisomycin bound to the yeast 80S ribosomeX-RAY DIFFRACTION3121
404U4R|1|7Crystal structure of Lactimidomycin bound to the yeast 80S ribosomeX-RAY DIFFRACTION2.8121
414U3U|1|7Crystal structure of Cycloheximide bound to the yeast 80S ribosomeX-RAY DIFFRACTION2.9121
424V88|1|A7The structure of the eukaryotic ribosome at 3.0 A resolution.X-RAY DIFFRACTION3121
436WOO|1|7CryoEM structure of yeast 80S ribosome with Met-tRNAiMet, eIF5B, and GDPELECTRON MICROSCOPY2.9121
447MPJ|1|A3Stm1 bound vacant 80S structure isolated from nop1-D243AELECTRON MICROSCOPY2.7120
457AZY|1|FContext-specific inhibition of eukaryotic translation by macrolide antibioticsELECTRON MICROSCOPY2.877121
468EVR|1|A3Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, and sordarin, Structure IIELECTRON MICROSCOPY2.87121
478EVQ|1|A3Hypopseudouridylated Ribosome bound with TSV IRES, eEF2, GDP, and sordarin, Structure IELECTRON MICROSCOPY2.72121
488EUB|1|A3Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2 and GDP, Structure IELECTRON MICROSCOPY2.52121
498EVS|1|A3Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2 and GDP, Structure IIELECTRON MICROSCOPY2.62121
508EWB|1|A3Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2 and GDP, Structure IIIELECTRON MICROSCOPY2.87121
518EVP|1|A3Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), Structure IELECTRON MICROSCOPY2.38121
528EVT|1|A3Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES) refined against a composite mapELECTRON MICROSCOPY2.2121
538EWC|1|A3Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), Structure IIELECTRON MICROSCOPY2.45121
548HFR|1|2fNPC-trapped pre-60S particleELECTRON MICROSCOPY2.64121
556YLG|1|3Rix1-Rea1 pre-60S particle - 60S core, body 1 (rigid body refinement)ELECTRON MICROSCOPY3117
567V08|1|3Nucleoplasmic pre-60S intermediate of the Nog2 containing pre-rotation state from a Spb1 D52A suppressor 3 strainELECTRON MICROSCOPY2.36120
577UQZ|1|3Nucleoplasmic pre-60S intermediate of the Nog2 containing pre-rotation state from a SPB1 D52A strainELECTRON MICROSCOPY2.44120
587UOO|1|3Nucleoplasmic pre-60S intermediate of the Nog2 containing pre-rotation stateELECTRON MICROSCOPY2.34120
597UQB|1|3Nucleoplasmic pre-60S intermediate of the Nog2 containing pre-rotation state from a SPB1-D52A strain with AlF4ELECTRON MICROSCOPY2.43120

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.


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