Equivalence class NR_3.0_18586.71 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | #NTs | Date |
|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 8P9A|1|AS (rep) | 5S ribosomal RNA | 5S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF00001 | 80S yeast ribosome in complex with Methyllissoclimide | X-ray diffraction | 2.9 | 121 | 2024-11-27 |
| 2 | 8P9A|1|3 | 5S ribosomal RNA | 5S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF00001 | 80S yeast ribosome in complex with Methyllissoclimide | X-ray diffraction | 2.9 | 121 | 2024-11-27 |
| 3 | 5TBW|1|AS | 5S ribosomal RNA | 5S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF00001 | Crystal structure of chlorolissoclimide bound to the yeast 80S ribosome | X-ray diffraction | 3 | 121 | 2017-07-26 |
| 4 | 5TBW|1|3 | 5S ribosomal RNA | 5S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF00001 | Crystal structure of chlorolissoclimide bound to the yeast 80S ribosome | X-ray diffraction | 3 | 121 | 2017-07-26 |
| 5 | 4V88|1|A3 | 5S ribosomal RNA | 5S rRNA | Saccharomyces cerevisiae | Eukarya | RF00001 | The structure of the eukaryotic ribosome at 3.0 A resolution. | X-ray diffraction | 3 | 121 | 2014-07-09 |
| 6 | 4V88|1|A7 | 5S ribosomal RNA | 5S rRNA | Saccharomyces cerevisiae | Eukarya | RF00001 | The structure of the eukaryotic ribosome at 3.0 A resolution. | X-ray diffraction | 3 | 121 | 2014-07-09 |
| 7 | 7OSA|1|AB | 5S ribosomal RNA | 5S | Saccharomyces cerevisiae | Eukarya | RF00001 | Pre-translocation complex of 80 S.cerevisiae ribosome with eEF2 and ligands | X-ray diffraction | 3 | 121 | 2021-12-08 |
| 8 | 7OSM|1|AB | 5S ribosomal RNA | 5S rRNA | Saccharomyces cerevisiae | Eukarya | RF00001 | Intermediate translocation complex of 80 S.cerevisiae ribosome with eEF2 and ligands | X-ray diffraction | 3 | 121 | 2021-12-08 |
| 9 | 8CCS|1|BB | 5S ribosomal RNA | 5S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF00001 | 80S S. cerevisiae ribosome with ligands in hybrid-1 pre-translocation (PRE-H1) complex | Electron microscopy | 1.97 | 121 | 2023-09-20 |
| 10 | 8CDR|1|BB | 5S ribosomal RNA | 5S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF00001 | Translocation intermediate 2 (TI-2) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarin | Electron microscopy | 2.04 | 121 | 2023-09-20 |
| 11 | 8CEH|1|BB | 5S ribosomal RNA | 5S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF00001 | Translocation intermediate 4 (TI-4) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarin | Electron microscopy | 2.05 | 121 | 2023-09-20 |
| 12 | 8P8N|1|LE | 5S ribosomal RNA | 5S rRNA | Saccharomyces cerevisiae | Eukarya | RF00001 | Mouse RPL39 integrated into the yeast 60S ribosomal subunit | Electron microscopy | 2.15 | 121 | 2024-06-12 |
| 13 | 8PFR|1|LE | 5S ribosomal RNA | 5S rRNA | Saccharomyces cerevisiae | Eukarya | RF00001 | Mouse RPL39L integrated into the yeast 60S ribosomal subunit | Electron microscopy | 2.15 | 121 | 2024-06-26 |
| 14 | 8EVT|1|A3 | 5S ribosomal RNA | 5s rRNA | Saccharomyces cerevisiae | Eukarya | RF00001 | Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES) refined against a composite map | Electron microscopy | 2.2 | 121 | 2023-09-06 |
| 15 | 8T2Y|1|A3 | 5S ribosomal RNA | 5s rRNA | Saccharomyces cerevisiae | Eukarya | RF00001 | Hypomethylated yeast 80S bound with cycloheximide, P-site tRNA, and A-site tRNA, messenger RNA, PRE | Electron microscopy | 2.2 | 121 | 2024-12-11 |
| 16 | 8P8U|1|LE | 5S ribosomal RNA | 5S rRNA | Saccharomyces cerevisiae | Eukarya | RF00001 | Yeast 60S ribosomal subunit | Electron microscopy | 2.23 | 121 | 2024-06-12 |
| 17 | 8CGN|1|BB | 5S ribosomal RNA | 5S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF00001 | Non-rotated 80S S. cerevisiae ribosome with ligands | Electron microscopy | 2.28 | 121 | 2023-09-20 |
| 18 | 7UOO|1|3 | 5S ribosomal RNA | 5S rRNA | Saccharomyces cerevisiae BY4741 | Eukarya | RF00001 | Nucleoplasmic pre-60S intermediate of the Nog2 containing pre-rotation state | Electron microscopy | 2.34 | 121 | 2023-03-15 |
| 19 | 7V08|1|3 | 5S ribosomal RNA | 5S rRNA | Saccharomyces cerevisiae BY4741 | Eukarya | RF00001 | Nucleoplasmic pre-60S intermediate of the Nog2 containing pre-rotation state from a Spb1 D52A suppressor 3 strain | Electron microscopy | 2.36 | 121 | 2023-03-15 |
| 20 | 8EVP|1|A3 | 5S ribosomal RNA | 5s rRNA | Saccharomyces cerevisiae | Eukarya | RF00001 | Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), Structure I | Electron microscopy | 2.38 | 121 | 2023-09-06 |
| 21 | 7ZW0|1|LC | 5S ribosomal RNA | 5S ribosomal RNA (RDN5-1) | Saccharomyces cerevisiae W303 | Eukarya | RF00001 | FAP-80S Complex - Rotated state | Electron microscopy | 2.4 | 121 | 2022-10-05 |
| 22 | 8AGX|1|h | 5S ribosomal RNA | 5S rRNA | Saccharomyces cerevisiae | Eukarya | RF00001 | Yeast RQC complex in state with the RING domain of Ltn1 in the IN position | Electron microscopy | 2.4 | 121 | 2023-03-08 |
| 23 | 8T2Z|1|A3 | 5S ribosomal RNA | 5s rRNA | Saccharomyces cerevisiae | Eukarya | RF00001 | Hypomethylated yeast 80S bound with cycloheximide, P-site tRNA, and A-site tRNA, messenger RNA, POST | Electron microscopy | 2.4 | 121 | 2024-12-11 |
| 24 | 8BN3|1|3 | 5S ribosomal RNA | 5S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF00001 | Yeast 80S, ES7s delta, eIF5A, Stm1 containing | Electron microscopy | 2.4 | 121 | 2024-01-10 |
| 25 | 7TOP|1|A5S | 5S ribosomal RNA | 5S rRNA | Saccharomyces cerevisiae | Eukarya | RF00001 | Yeast 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein PR20 | Electron microscopy | 2.4 | 121 | 2022-05-25 |
| 26 | 7UQB|1|3 | 5S ribosomal RNA | 5S rRNA | Saccharomyces cerevisiae BY4741 | Eukarya | RF00001 | Nucleoplasmic pre-60S intermediate of the Nog2 containing pre-rotation state from a SPB1-D52A strain with AlF4 | Electron microscopy | 2.43 | 121 | 2023-03-15 |
| 27 | 7UQZ|1|3 | 5S ribosomal RNA | 5S rRNA | Saccharomyces cerevisiae BY4741 | Eukarya | RF00001 | Nucleoplasmic pre-60S intermediate of the Nog2 containing pre-rotation state from a SPB1 D52A strain | Electron microscopy | 2.44 | 121 | 2023-03-15 |
| 28 | 8EWC|1|A3 | 5S ribosomal RNA | 5s rRNA | Saccharomyces cerevisiae | Eukarya | RF00001 | Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), Structure II | Electron microscopy | 2.45 | 121 | 2023-09-06 |
| 29 | 8T2X|1|A3 | 5S ribosomal RNA | 5s rRNA | Saccharomyces cerevisiae | Eukarya | RF00001 | Hypomethylated yeast 80S bound with cycloheximide, P-site tRNA, A-site tRNA, messenger RNA and eIF5A, PRE | Electron microscopy | 2.46 | 121 | 2024-12-11 |
| 30 | 8CIV|1|BB | 5S ribosomal RNA | 5S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF00001 | Translocation intermediate 5 (TI-5) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarin | Electron microscopy | 2.47 | 121 | 2023-09-20 |
| 31 | 7ZUX|1|4 | 5S ribosomal RNA | 5S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF00001 | Collided ribosome in a disome unit from S. cerevisiae | Electron microscopy | 2.5 | 121 | 2023-02-22 |
| 32 | 8AAF|1|h | 5S ribosomal RNA | 5S rRNA | Saccharomyces cerevisiae | Eukarya | RF00001 | Yeast RQC complex in state G | Electron microscopy | 2.5 | 121 | 2023-03-08 |
| 33 | 8EUB|1|A3 | 5S ribosomal RNA | 5S rRNA | Saccharomyces cerevisiae | Eukarya | RF00001 | Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2 and GDP, Structure I | Electron microscopy | 2.52 | 121 | 2023-09-06 |
| 34 | 8CG8|1|BB | 5S ribosomal RNA | 5S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF00001 | Translocation intermediate 3 (TI-3) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarin | Electron microscopy | 2.57 | 121 | 2023-09-20 |
| 35 | 6T4Q|1|C4 | 5S ribosomal RNA | 5S rRNA | Saccharomyces cerevisiae | Eukarya | RF00001 | Structure of yeast 80S ribosome stalled on the CGA-CCG inhibitory codon combination. | Electron microscopy | 2.6 | 121 | 2019-12-25 |
| 36 | 8AGW|1|h | 5S ribosomal RNA | 5S rRNA | Saccharomyces cerevisiae | Eukarya | RF00001 | Yeast RQC complex in state D | Electron microscopy | 2.6 | 121 | 2023-03-08 |
| 37 | 8AGT|1|h | 5S ribosomal RNA | 5S rRNA | Saccharomyces cerevisiae | Eukarya | RF00001 | Yeast RQC complex in state F | Electron microscopy | 2.6 | 121 | 2023-03-08 |
| 38 | 8AGZ|1|h | 5S ribosomal RNA | 5S rRNA | Saccharomyces cerevisiae | Eukarya | RF00001 | Yeast RQC complex in state with the RING domain of Ltn1 in the OUT position | Electron microscopy | 2.6 | 121 | 2023-03-08 |
| 39 | 8AGV|1|h | 5S ribosomal RNA | 5S rRNA | Saccharomyces cerevisiae | Eukarya | RF00001 | Yeast RQC complex in state H | Electron microscopy | 2.6 | 121 | 2023-03-08 |
| 40 | 8EVS|1|A3 | 5S ribosomal RNA | 5s rRNA | Saccharomyces cerevisiae | Eukarya | RF00001 | Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2 and GDP, Structure II | Electron microscopy | 2.62 | 121 | 2023-09-06 |
| 41 | 8HFR|1|2f | 5S ribosomal RNA | 5S ribosomal RNA | Saccharomyces cerevisiae S288C | Eukarya | RF00001 | NPC-trapped pre-60S particle | Electron microscopy | 2.64 | 121 | 2023-04-12 |
| 42 | 8P8M|1|LE | 5S ribosomal RNA | 5S rRNA | Saccharomyces cerevisiae | Eukarya | RF00001 | Yeast 60S ribosomal subunit, RPL39 deletion | Electron microscopy | 2.66 | 121 | 2024-06-12 |
| 43 | 7MPJ|1|A3 | 5S ribosomal RNA | 5S rRNA | Saccharomyces cerevisiae | Eukarya | RF00001 | Stm1 bound vacant 80S structure isolated from nop1-D243A | Electron microscopy | 2.7 | 121 | 2022-05-11 |
| 44 | 8AGU|1|h | 5S ribosomal RNA | 5S rRNA | Saccharomyces cerevisiae | Eukarya | RF00001 | Yeast RQC complex in state E | Electron microscopy | 2.7 | 121 | 2023-03-08 |
| 45 | 8CF5|1|BB | 5S ribosomal RNA | 5S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF00001 | Translocation intermediate 1 (TI-1) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarin | Electron microscopy | 2.71 | 121 | 2023-09-20 |
| 46 | 8EVQ|1|A3 | 5S ribosomal RNA | 5s rRNA | Saccharomyces cerevisiae | Eukarya | RF00001 | Hypopseudouridylated Ribosome bound with TSV IRES, eEF2, GDP, and sordarin, Structure I | Electron microscopy | 2.72 | 121 | 2023-09-06 |
| 47 | 8CDL|1|BB | 5S ribosomal RNA | 5S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF00001 | 80S S. cerevisiae ribosome with ligands in hybrid-2 pre-translocation (PRE-H2) complex | Electron microscopy | 2.72 | 121 | 2023-09-20 |
| 48 | 7TOO|1|A5S | 5S ribosomal RNA | 5S rRNA | Saccharomyces cerevisiae | Eukarya | RF00001 | Yeast 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein GR20 | Electron microscopy | 2.7 | 121 | 2022-05-25 |
| 49 | 6TB3|1|BR | 5S ribosomal RNA | 5S rRNA | Saccharomyces cerevisiae | Eukarya | RF00001 | yeast 80S ribosome in complex with the Not5 subunit of the CCR4-NOT complex | Electron microscopy | 2.8 | 121 | 2020-04-22 |
| 50 | 6SNT|1|4 | 5S ribosomal RNA | 5S rRNA | Saccharomyces cerevisiae | Eukarya | RF00001 | Yeast 80S ribosome stalled on SDD1 mRNA. | Electron microscopy | 2.8 | 121 | 2020-03-04 |
| 51 | 8T3A|1|A3 | 5S ribosomal RNA | 5s rRNA | Saccharomyces cerevisiae | Eukarya | RF00001 | Hypomethylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, sordarin, and hibernating factor Los2 | Electron microscopy | 2.86 | 121 | 2024-12-11 |
| 52 | 8EWB|1|A3 | 5S ribosomal RNA | 5s rRNA | Saccharomyces cerevisiae | Eukarya | RF00001 | Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2 and GDP, Structure III | Electron microscopy | 2.87 | 121 | 2023-09-06 |
| 53 | 8EVR|1|A3 | 5S ribosomal RNA | 5s rRNA | Saccharomyces cerevisiae | Eukarya | RF00001 | Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, and sordarin, Structure II | Electron microscopy | 2.87 | 121 | 2023-09-06 |
| 54 | 7AZY|1|F | 5S ribosomal RNA | 5S ribosomal RNA | Saccharomyces cerevisiae S288C | Eukarya | RF00001 | Context-specific inhibition of eukaryotic translation by macrolide antibiotics | Electron microscopy | 2.877 | 121 | 2021-05-19 |
| 55 | 8T30|1|A3 | 5S ribosomal RNA | 5s rRNA | Saccharomyces cerevisiae | Eukarya | RF00001 | Hypomethylated yeast 80S bound with cycloheximide, unmodified U2921, mid rotated | Electron microscopy | 2.88 | 121 | 2024-12-11 |
| 56 | 4U4R|1|3 | 5S ribosomal RNA | 5S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF00001 | Crystal structure of Lactimidomycin bound to the yeast 80S ribosome | X-ray diffraction | 2.8 | 121 | 2014-10-22 |
| 57 | 4U3U|1|7 | 5S ribosomal RNA | 5S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF00001 | Crystal structure of Cycloheximide bound to the yeast 80S ribosome | X-ray diffraction | 2.9 | 121 | 2014-10-22 |
| 58 | 6WOO|1|7 | 5S ribosomal RNA | 5S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF00001 | CryoEM structure of yeast 80S ribosome with Met-tRNAiMet, eIF5B, and GDP | Electron microscopy | 2.9 | 121 | 2020-09-23 |
| 59 | 9F9S|1|M3 | 5S ribosomal RNA | Saccharomyces cerevisiae S288C 5S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF00001 | Yeast SDD1 Disome with Mbf1 | Electron microscopy | 2.9 | 121 | 2024-12-04 |
| 60 | 7UG6|1|3 | 5S ribosomal RNA | 5S rRNA | Saccharomyces cerevisiae S288C | Eukarya | RF00001 | Cryo-EM structure of pre-60S ribosomal subunit, unmethylated G2922 | Electron microscopy | 2.9 | 121 | 2022-12-21 |
| 61 | 9F9S|1|L3 | 5S ribosomal RNA | Saccharomyces cerevisiae S288C 5S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF00001 | Yeast SDD1 Disome with Mbf1 | Electron microscopy | 2.9 | 121 | 2024-12-04 |
| 62 | 8T3D|1|A3 | 5S ribosomal RNA | 5s rRNA | Saccharomyces cerevisiae | Eukarya | RF00001 | Hypomethylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, and sordarin, Structure III | Electron microscopy | 2.95 | 121 | 2024-12-11 |
| 63 | 4U4R|1|7 | 5S ribosomal RNA | 5S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF00001 | Crystal structure of Lactimidomycin bound to the yeast 80S ribosome | X-ray diffraction | 2.8 | 121 | 2014-10-22 |
| 64 | 4U3U|1|3 | 5S ribosomal RNA | 5S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF00001 | Crystal structure of Cycloheximide bound to the yeast 80S ribosome | X-ray diffraction | 2.9 | 121 | 2014-10-22 |
| 65 | 8K82|1|C4 | 5S ribosomal RNA | 5S rRNA | Saccharomyces cerevisiae | Eukarya | RF00001 | Cryo-EM structure of the yeast 80S ribosome with tigecycline, Not5 and P-site tRNA | Electron microscopy | 3 | 121 | 2024-07-10 |
| 66 | 4U4Q|1|7 | 5S ribosomal RNA | 5S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF00001 | Crystal structure of Homoharringtonine bound to the yeast 80S ribosome | X-ray diffraction | 3 | 121 | 2014-10-22 |
| 67 | 4U4Q|1|3 | 5S ribosomal RNA | 5S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF00001 | Crystal structure of Homoharringtonine bound to the yeast 80S ribosome | X-ray diffraction | 3 | 121 | 2014-10-22 |
| 68 | 4U3M|1|7 | 5S ribosomal RNA | 5.8s rRNA | Saccharomyces cerevisiae | Eukarya | RF00001 | Crystal structure of Anisomycin bound to the yeast 80S ribosome | X-ray diffraction | 3 | 121 | 2014-10-22 |
| 69 | 4U52|1|7 | 5S ribosomal RNA | 5S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF00001 | Crystal structure of Nagilactone C bound to the yeast 80S ribosome | X-ray diffraction | 3 | 121 | 2014-10-22 |
| 70 | 4U3M|1|3 | 5S ribosomal RNA | 5.8s rRNA | Saccharomyces cerevisiae | Eukarya | RF00001 | Crystal structure of Anisomycin bound to the yeast 80S ribosome | X-ray diffraction | 3 | 121 | 2014-10-22 |
| 71 | 4U4U|1|7 | 5S ribosomal RNA | 5S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF00001 | Crystal structure of Lycorine bound to the yeast 80S ribosome | X-ray diffraction | 3 | 121 | 2014-10-22 |
| 72 | 6YLG|1|3 | 5S ribosomal RNA | 5S rRNA | Saccharomyces cerevisiae | Eukarya | RF00001 | Rix1-Rea1 pre-60S particle - 60S core, body 1 (rigid body refinement) | Electron microscopy | 3 | 117 | 2020-07-29 |
| 73 | 4U52|1|3 | 5S ribosomal RNA | 5S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF00001 | Crystal structure of Nagilactone C bound to the yeast 80S ribosome | X-ray diffraction | 3 | 121 | 2014-10-22 |
| 74 | 4U4U|1|3 | 5S ribosomal RNA | 5S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF00001 | Crystal structure of Lycorine bound to the yeast 80S ribosome | X-ray diffraction | 3 | 121 | 2014-10-22 |
Release history
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
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Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
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Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.
| #S | View | PDB | Title | Method | Resolution | #NTs |
|---|---|---|---|---|---|---|
| 1 | 7UG6|1|3 | Cryo-EM structure of pre-60S ribosomal subunit, unmethylated G2922 | ELECTRON MICROSCOPY | 2.9 | 121 | |
| 2 | 7OSM|1|AB | Intermediate translocation complex of 80 S.cerevisiae ribosome with eEF2 and ligands | X-RAY DIFFRACTION | 3 | 121 | |
| 3 | 7OSA|1|AB | Pre-translocation complex of 80 S.cerevisiae ribosome with eEF2 and ligands | X-RAY DIFFRACTION | 3 | 121 | |
| 4 | 9F9S|1|M3 | Yeast SDD1 Disome with Mbf1 | ELECTRON MICROSCOPY | 2.9 | 121 | |
| 5 | 8CDL|1|BB | 80S S. cerevisiae ribosome with ligands in hybrid-2 pre-translocation (PRE-H2) complex | ELECTRON MICROSCOPY | 2.72 | 121 | |
| 6 | 8CF5|1|BB | Translocation intermediate 1 (TI-1) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarin | ELECTRON MICROSCOPY | 2.71 | 121 | |
| 7 | 8CCS|1|BB | 80S S. cerevisiae ribosome with ligands in hybrid-1 pre-translocation (PRE-H1) complex | ELECTRON MICROSCOPY | 1.97 | 121 | |
| 8 | 8CEH|1|BB | Translocation intermediate 4 (TI-4) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarin | ELECTRON MICROSCOPY | 2.05 | 121 | |
| 9 | 8CGN|1|BB | Non-rotated 80S S. cerevisiae ribosome with ligands | ELECTRON MICROSCOPY | 2.28 | 121 | |
| 10 | 8CDR|1|BB | Translocation intermediate 2 (TI-2) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarin | ELECTRON MICROSCOPY | 2.04 | 121 | |
| 11 | 8CIV|1|BB | Translocation intermediate 5 (TI-5) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarin | ELECTRON MICROSCOPY | 2.47 | 121 | |
| 12 | 8CG8|1|BB | Translocation intermediate 3 (TI-3) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarin | ELECTRON MICROSCOPY | 2.57 | 121 | |
| 13 | 8T3A|1|A3 | Hypomethylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, sordarin, and hibernating factor Los2 | ELECTRON MICROSCOPY | 2.86 | 121 | |
| 14 | 8T3D|1|A3 | Hypomethylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, and sordarin, Structure III | ELECTRON MICROSCOPY | 2.95 | 121 | |
| 15 | 8T2Z|1|A3 | Hypomethylated yeast 80S bound with cycloheximide, P-site tRNA, and A-site tRNA, messenger RNA, POST | ELECTRON MICROSCOPY | 2.4 | 121 | |
| 16 | 8T2X|1|A3 | Hypomethylated yeast 80S bound with cycloheximide, P-site tRNA, A-site tRNA, messenger RNA and eIF5A, PRE | ELECTRON MICROSCOPY | 2.46 | 121 | |
| 17 | 8T2Y|1|A3 | Hypomethylated yeast 80S bound with cycloheximide, P-site tRNA, and A-site tRNA, messenger RNA, PRE | ELECTRON MICROSCOPY | 2.2 | 121 | |
| 18 | 8T30|1|A3 | Hypomethylated yeast 80S bound with cycloheximide, unmodified U2921, mid rotated | ELECTRON MICROSCOPY | 2.88 | 121 | |
| 19 | 8EVR|1|A3 | Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, and sordarin, Structure II | ELECTRON MICROSCOPY | 2.87 | 121 | |
| 20 | 8EVQ|1|A3 | Hypopseudouridylated Ribosome bound with TSV IRES, eEF2, GDP, and sordarin, Structure I | ELECTRON MICROSCOPY | 2.72 | 121 | |
| 21 | 8EUB|1|A3 | Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2 and GDP, Structure I | ELECTRON MICROSCOPY | 2.52 | 121 | |
| 22 | 8EVS|1|A3 | Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2 and GDP, Structure II | ELECTRON MICROSCOPY | 2.62 | 121 | |
| 23 | 8EWB|1|A3 | Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2 and GDP, Structure III | ELECTRON MICROSCOPY | 2.87 | 121 | |
| 24 | 8EVP|1|A3 | Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), Structure I | ELECTRON MICROSCOPY | 2.38 | 121 | |
| 25 | 8EWC|1|A3 | Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), Structure II | ELECTRON MICROSCOPY | 2.45 | 121 | |
| 26 | 8EVT|1|A3 | Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES) refined against a composite map | ELECTRON MICROSCOPY | 2.2 | 121 | |
| 27 | 7MPJ|1|A3 | Stm1 bound vacant 80S structure isolated from nop1-D243A | ELECTRON MICROSCOPY | 2.7 | 121 | |
| 28 | 7AZY|1|F | Context-specific inhibition of eukaryotic translation by macrolide antibiotics | ELECTRON MICROSCOPY | 2.877 | 121 | |
| 29 | 6WOO|1|7 | CryoEM structure of yeast 80S ribosome with Met-tRNAiMet, eIF5B, and GDP | ELECTRON MICROSCOPY | 2.9 | 121 | |
| 30 | 4U52|1|7 | Crystal structure of Nagilactone C bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3 | 121 | |
| 31 | 4U4U|1|7 | Crystal structure of Lycorine bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3 | 121 | |
| 32 | 4U4Q|1|7 | Crystal structure of Homoharringtonine bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3 | 121 | |
| 33 | 4U3M|1|7 | Crystal structure of Anisomycin bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3 | 121 | |
| 34 | 4U4R|1|7 | Crystal structure of Lactimidomycin bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 2.8 | 121 | |
| 35 | 4U3U|1|7 | Crystal structure of Cycloheximide bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 2.9 | 121 | |
| 36 | 4V88|1|A7 | The structure of the eukaryotic ribosome at 3.0 A resolution. | X-RAY DIFFRACTION | 3 | 121 | |
| 37 | 8P9A|1|AS | 80S yeast ribosome in complex with Methyllissoclimide | X-RAY DIFFRACTION | 2.9 | 121 | |
| 38 | 5TBW|1|AS | Crystal structure of chlorolissoclimide bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3 | 121 | |
| 39 | 4U52|1|3 | Crystal structure of Nagilactone C bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3 | 121 | |
| 40 | 4U4Q|1|3 | Crystal structure of Homoharringtonine bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3 | 121 | |
| 41 | 4U4R|1|3 | Crystal structure of Lactimidomycin bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 2.8 | 121 | |
| 42 | 4V88|1|A3 | The structure of the eukaryotic ribosome at 3.0 A resolution. | X-RAY DIFFRACTION | 3 | 121 | |
| 43 | 4U3U|1|3 | Crystal structure of Cycloheximide bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 2.9 | 121 | |
| 44 | 4U4U|1|3 | Crystal structure of Lycorine bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3 | 121 | |
| 45 | 4U3M|1|3 | Crystal structure of Anisomycin bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3 | 121 | |
| 46 | 5TBW|1|3 | Crystal structure of chlorolissoclimide bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3 | 121 | |
| 47 | 8P9A|1|3 | 80S yeast ribosome in complex with Methyllissoclimide | X-RAY DIFFRACTION | 2.9 | 121 | |
| 48 | 7ZUX|1|4 | Collided ribosome in a disome unit from S. cerevisiae | ELECTRON MICROSCOPY | 2.5 | 121 | |
| 49 | 7ZW0|1|LC | FAP-80S Complex - Rotated state | ELECTRON MICROSCOPY | 2.4 | 121 | |
| 50 | 8AGW|1|h | Yeast RQC complex in state D | ELECTRON MICROSCOPY | 2.6 | 121 | |
| 51 | 8AGZ|1|h | Yeast RQC complex in state with the RING domain of Ltn1 in the OUT position | ELECTRON MICROSCOPY | 2.6 | 121 | |
| 52 | 8AAF|1|h | Yeast RQC complex in state G | ELECTRON MICROSCOPY | 2.5 | 121 | |
| 53 | 8AGX|1|h | Yeast RQC complex in state with the RING domain of Ltn1 in the IN position | ELECTRON MICROSCOPY | 2.4 | 121 | |
| 54 | 8AGT|1|h | Yeast RQC complex in state F | ELECTRON MICROSCOPY | 2.6 | 121 | |
| 55 | 8AGV|1|h | Yeast RQC complex in state H | ELECTRON MICROSCOPY | 2.6 | 121 | |
| 56 | 8AGU|1|h | Yeast RQC complex in state E | ELECTRON MICROSCOPY | 2.7 | 121 | |
| 57 | 9F9S|1|L3 | Yeast SDD1 Disome with Mbf1 | ELECTRON MICROSCOPY | 2.9 | 121 | |
| 58 | 8K82|1|C4 | Cryo-EM structure of the yeast 80S ribosome with tigecycline, Not5 and P-site tRNA | ELECTRON MICROSCOPY | 3 | 121 | |
| 59 | 6TB3|1|BR | yeast 80S ribosome in complex with the Not5 subunit of the CCR4-NOT complex | ELECTRON MICROSCOPY | 2.8 | 121 | |
| 60 | 6SNT|1|4 | Yeast 80S ribosome stalled on SDD1 mRNA. | ELECTRON MICROSCOPY | 2.8 | 121 | |
| 61 | 6T4Q|1|C4 | Structure of yeast 80S ribosome stalled on the CGA-CCG inhibitory codon combination. | ELECTRON MICROSCOPY | 2.6 | 121 | |
| 62 | 8BN3|1|3 | Yeast 80S, ES7s delta, eIF5A, Stm1 containing | ELECTRON MICROSCOPY | 2.4 | 121 | |
| 63 | 7TOP|1|A5S | Yeast 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein PR20 | ELECTRON MICROSCOPY | 2.4 | 121 | |
| 64 | 7TOO|1|A5S | Yeast 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein GR20 | ELECTRON MICROSCOPY | 2.7 | 121 | |
| 65 | 8P8U|1|LE | Yeast 60S ribosomal subunit | ELECTRON MICROSCOPY | 2.23 | 121 | |
| 66 | 8P8N|1|LE | Mouse RPL39 integrated into the yeast 60S ribosomal subunit | ELECTRON MICROSCOPY | 2.15 | 121 | |
| 67 | 8PFR|1|LE | Mouse RPL39L integrated into the yeast 60S ribosomal subunit | ELECTRON MICROSCOPY | 2.15 | 121 | |
| 68 | 8P8M|1|LE | Yeast 60S ribosomal subunit, RPL39 deletion | ELECTRON MICROSCOPY | 2.66 | 121 | |
| 69 | 8HFR|1|2f | NPC-trapped pre-60S particle | ELECTRON MICROSCOPY | 2.64 | 121 | |
| 70 | 6YLG|1|3 | Rix1-Rea1 pre-60S particle - 60S core, body 1 (rigid body refinement) | ELECTRON MICROSCOPY | 3 | 117 | |
| 71 | 7V08|1|3 | Nucleoplasmic pre-60S intermediate of the Nog2 containing pre-rotation state from a Spb1 D52A suppressor 3 strain | ELECTRON MICROSCOPY | 2.36 | 121 | |
| 72 | 7UQZ|1|3 | Nucleoplasmic pre-60S intermediate of the Nog2 containing pre-rotation state from a SPB1 D52A strain | ELECTRON MICROSCOPY | 2.44 | 121 | |
| 73 | 7UOO|1|3 | Nucleoplasmic pre-60S intermediate of the Nog2 containing pre-rotation state | ELECTRON MICROSCOPY | 2.34 | 121 | |
| 74 | 7UQB|1|3 | Nucleoplasmic pre-60S intermediate of the Nog2 containing pre-rotation state from a SPB1-D52A strain with AlF4 | ELECTRON MICROSCOPY | 2.43 | 121 |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.
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