NR_3.0_19831.3

Members (33)
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#	IFE	Standardized name	Molecule	Organism	Source	Rfam	Title	Method	Res. Å	#NTs	Date
1	8BF7\|1\|5 (rep)	Transfer RNA	Dipeptidyl A-site tRNA(Lys), mRNA	Escherichia coli K-12	Bacteria	RF00005	Elongating E. coli 70S ribosome containing deacylated tRNA(iMet) in the P-site and AAA mRNA codon with cognate dipeptidyl-tRNA(Lys) in the A-site	Electron microscopy	2.33	76	2023-08-16
2	8BH4\|1\|5	Transfer RNA	Dipeptidyl A-site tRNA(Lys), mRNA	Escherichia coli K-12	Bacteria	RF00005	Elongating E. coli 70S ribosome containing deacylated tRNA(iMet) in the P-site and AAm6A mRNA codon with cognate dipeptidyl-tRNA(Lys) in the A-site	Electron microscopy	2.62	76	2023-08-16
3	7ZTA\|1\|PTR1	Transfer RNA	mRNA, tRNA-Lys	Escherichia coli K-12	Bacteria	RF00005	Structure of an Escherichia coli 70S ribosome stalled by Tetracenomycin X during translation of an MAAAPQK(C) peptide	Electron microscopy	2.7	73	2023-04-12
4	7N1P\|1\|Pt	Transfer RNA	mRNA, tRNA	Escherichia coli K-12	Bacteria	RF00005	Elongating 70S ribosome complex in a classical pre-translocation (PRE-C) conformation	Electron microscopy	2.33	76	2021-07-14
5	8BHJ\|1\|5	Transfer RNA	Dipeptidyl A-site tRNA(Lys), mRNA	Escherichia coli K-12	Bacteria	RF00005	Elongating E. coli 70S ribosome containing deacylated tRNA(iMet) in the P-site and Am6AA mRNA codon with cognate dipeptidyl-tRNA(Lys) in the A-site	Electron microscopy	2.81	76	2023-08-16
6	8BHN\|1\|5	Transfer RNA	Dipeptidyl A-site tRNA(Lys), mRNA	Escherichia coli K-12	Bacteria	RF00005	Elongating E. coli 70S ribosome containing deacylated tRNA(iMet) in the P-site and m6AAA mRNA codon with cognate dipeptidyl-tRNA(Lys) in the A-site	Electron microscopy	2.85	76	2023-08-16
7	7N2C\|1\|Pt	Transfer RNA	Chains: mR, Chains: Pt	Escherichia coli	Bacteria	RF00005	Elongating 70S ribosome complex in a fusidic acid-stalled intermediate state of translocation bound to EF-G(GDP) (INT2)	Electron microscopy	2.72	76	2021-07-14
8	5E81\|1\|1K	Transfer RNA	mRNA, tRNA-Lys	Escherichia coli	Bacteria	RF00005	Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with wobble pair	X-ray diffraction	2.95	72	2016-01-27
9	7N31\|1\|Pt	Transfer RNA	mRNA, tRNA	Escherichia coli K-12	Bacteria	RF00005	Elongating 70S ribosome complex in a post-translocation (POST) conformation	Electron microscopy	2.69	76	2021-07-14
10	5IB7\|1\|1K	Transfer RNA	mRNA, tRNALys	Escherichia coli	Bacteria	RF00005	Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet, near-cognate tRNALys with U-G mismatch in the A-site and antibiotic paromomycin	X-ray diffraction	2.99	72	2016-05-25
11	9O3K\|1\|1w	Transfer RNA	A-site Aminoacyl-tRNA Lys-tRNAlys, MET-LYS-mRNA	Escherichia coli	Bacteria	RF00005	Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with macrolide erythromycin, mRNA, aminoacylated A-site Lys-tRNAlys, P-site fMAC-peptidyl-tRNAmet, and deacylated E-site tRNAlys at 2.70A resolution	X-ray diffraction	2.7	74	2025-06-25
12	7N2U\|1\|Pt	Transfer RNA	mRNA, tRNA	Escherichia coli K-12	Bacteria	RF00005	Elongating 70S ribosome complex in a hybrid-H1 pre-translocation (PRE-H1) conformation	Electron microscopy	2.53	76	2021-07-14
13	9O3H\|1\|1w	Transfer RNA	A-site Aminoacyl-tRNA Lys-tRNAlys, MET-LYS-mRNA	Escherichia coli	Bacteria	RF00005	Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with macrolide erythromycin, mRNA, aminoacylated A-site Lys-tRNAlys, P-site fMRC-peptidyl-tRNAmet, and deacylated E-site tRNAlys at 2.65A resolution	X-ray diffraction	2.65	74	2025-06-25
14	5E81\|1\|1L	Transfer RNA	mRNA, tRNA-Lys	Escherichia coli	Bacteria	RF00005	Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with wobble pair	X-ray diffraction	2.95	69	2016-01-27
15	5IB7\|1\|3L	Transfer RNA	tRNALys	Escherichia coli	Bacteria	RF00005	Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet, near-cognate tRNALys with U-G mismatch in the A-site and antibiotic paromomycin	X-ray diffraction	2.99	72	2016-05-25
16	9O3K\|1\|2w	Transfer RNA	A-site Aminoacyl-tRNA Lys-tRNAlys, MET-LYS-mRNA	Escherichia coli	Bacteria	RF00005	Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with macrolide erythromycin, mRNA, aminoacylated A-site Lys-tRNAlys, P-site fMAC-peptidyl-tRNAmet, and deacylated E-site tRNAlys at 2.70A resolution	X-ray diffraction	2.7	74	2025-06-25
17	9O3J\|1\|1w	Transfer RNA	A-site Aminoacyl-tRNA Lys-tRNAlys, MET-LYS-mRNA	Escherichia coli	Bacteria	RF00005	Crystal structure of the wild-type drug-free Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A-site Lys-tRNAlys, P-site fMRC-peptidyl-tRNAmet, and deacylated E-site tRNAlys at 2.60A resolution	X-ray diffraction	2.6	74	2025-06-25
18	5IB7\|1\|1L	Transfer RNA	mRNA, tRNALys	Escherichia coli	Bacteria	RF00005	Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet, near-cognate tRNALys with U-G mismatch in the A-site and antibiotic paromomycin	X-ray diffraction	2.99	66	2016-05-25
19	9O3I\|1\|1w	Transfer RNA	A-site Aminoacyl-tRNA Lys-tRNAlys	Escherichia coli	Bacteria	RF00005	Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with ketolide telithromycin, mRNA, aminoacylated A-site Lys-tRNAlys, P-site fMRC-peptidyl-tRNAmet, and deacylated E-site tRNAlys at 2.80A resolution	X-ray diffraction	2.8	74	2025-06-25
20	9O3H\|1\|1y	Transfer RNA	E-site Deacylated tRNAlys	Escherichia coli	Bacteria	RF00005	Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with macrolide erythromycin, mRNA, aminoacylated A-site Lys-tRNAlys, P-site fMRC-peptidyl-tRNAmet, and deacylated E-site tRNAlys at 2.65A resolution	X-ray diffraction	2.65	74	2025-06-25
21	9O3J\|1\|1y	Transfer RNA	E-site Deacylated tRNAlys	Escherichia coli	Bacteria	RF00005	Crystal structure of the wild-type drug-free Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A-site Lys-tRNAlys, P-site fMRC-peptidyl-tRNAmet, and deacylated E-site tRNAlys at 2.60A resolution	X-ray diffraction	2.6	74	2025-06-25
22	5IB7\|1\|3K	Transfer RNA	tRNALys	Escherichia coli	Bacteria	RF00005	Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet, near-cognate tRNALys with U-G mismatch in the A-site and antibiotic paromomycin	X-ray diffraction	2.99	70	2016-05-25
23	9O3H\|1\|2y	Transfer RNA	E-site Deacylated tRNAlys	Escherichia coli	Bacteria	RF00005	Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with macrolide erythromycin, mRNA, aminoacylated A-site Lys-tRNAlys, P-site fMRC-peptidyl-tRNAmet, and deacylated E-site tRNAlys at 2.65A resolution	X-ray diffraction	2.65	74	2025-06-25
24	9O3K\|1\|1y	Transfer RNA	E-site Deacylated tRNAlys	Escherichia coli	Bacteria	RF00005	Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with macrolide erythromycin, mRNA, aminoacylated A-site Lys-tRNAlys, P-site fMAC-peptidyl-tRNAmet, and deacylated E-site tRNAlys at 2.70A resolution	X-ray diffraction	2.7	74	2025-06-25
25	9O3I\|1\|1y	Transfer RNA	E-site Deacylated tRNAlys	Escherichia coli	Bacteria	RF00005	Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with ketolide telithromycin, mRNA, aminoacylated A-site Lys-tRNAlys, P-site fMRC-peptidyl-tRNAmet, and deacylated E-site tRNAlys at 2.80A resolution	X-ray diffraction	2.8	74	2025-06-25
26	9RVC\|1\|Y	Transfer RNA	A-site tRNA-Lys	Escherichia coli	Bacteria	RF00005	staphylococcus aureus 70S initiation complex with natural mRNA	Electron microscopy	2.9	76	2026-07-22
27	9O3J\|1\|2w	Transfer RNA	A-site Aminoacyl-tRNA Lys-tRNAlys, MET-LYS-mRNA	Escherichia coli	Bacteria	RF00005	Crystal structure of the wild-type drug-free Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A-site Lys-tRNAlys, P-site fMRC-peptidyl-tRNAmet, and deacylated E-site tRNAlys at 2.60A resolution	X-ray diffraction	2.6	74	2025-06-25
28	9O3K\|1\|2y	Transfer RNA	E-site Deacylated tRNAlys	Escherichia coli	Bacteria	RF00005	Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with macrolide erythromycin, mRNA, aminoacylated A-site Lys-tRNAlys, P-site fMAC-peptidyl-tRNAmet, and deacylated E-site tRNAlys at 2.70A resolution	X-ray diffraction	2.7	74	2025-06-25
29	9O3H\|1\|2w	Transfer RNA	A-site Aminoacyl-tRNA Lys-tRNAlys, MET-LYS-mRNA	Escherichia coli	Bacteria	RF00005	Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with macrolide erythromycin, mRNA, aminoacylated A-site Lys-tRNAlys, P-site fMRC-peptidyl-tRNAmet, and deacylated E-site tRNAlys at 2.65A resolution	X-ray diffraction	2.65	74	2025-06-25
30	9O3I\|1\|2w	Transfer RNA	A-site Aminoacyl-tRNA Lys-tRNAlys	Escherichia coli	Bacteria	RF00005	Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with ketolide telithromycin, mRNA, aminoacylated A-site Lys-tRNAlys, P-site fMRC-peptidyl-tRNAmet, and deacylated E-site tRNAlys at 2.80A resolution	X-ray diffraction	2.8	74	2025-06-25
31	9O3J\|1\|2y	Transfer RNA	E-site Deacylated tRNAlys	Escherichia coli	Bacteria	RF00005	Crystal structure of the wild-type drug-free Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A-site Lys-tRNAlys, P-site fMRC-peptidyl-tRNAmet, and deacylated E-site tRNAlys at 2.60A resolution	X-ray diffraction	2.6	74	2025-06-25
32	7N30\|1\|Pt	Transfer RNA	mRNA, tRNA	Escherichia coli K-12	Bacteria	RF00005	Elongating 70S ribosome complex in a hybrid-H2* pre-translocation (PRE-H2*) conformation	Electron microscopy	2.66	76	2021-07-14
33	9O3I\|1\|2y	Transfer RNA	E-site Deacylated tRNAlys	Escherichia coli	Bacteria	RF00005	Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with ketolide telithromycin, mRNA, aminoacylated A-site Lys-tRNAlys, P-site fMRC-peptidyl-tRNAmet, and deacylated E-site tRNAlys at 2.80A resolution	X-ray diffraction	2.8	74	2025-06-25

Release history

Release	4.49
Date	2026-07-22

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This class	Descendant classes	Release id	Intersection	Only in this class	Added to child

Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.

#S	PDB	Title	Method	Resolution	#NTs
1	5IB7\|1\|3K	Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet, near-cognate tRNALys with U-G mismatch in the A-site and antibiotic paromomycin	X-RAY DIFFRACTION	2.99	70
2	5IB7\|1\|3L	Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet, near-cognate tRNALys with U-G mismatch in the A-site and antibiotic paromomycin	X-RAY DIFFRACTION	2.99	72
3	9O3I\|1\|1y	Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with ketolide telithromycin, mRNA, aminoacylated A-site Lys-tRNAlys, P-site fMRC-peptidyl-tRNAmet, and deacylated E-site tRNAlys at 2.80A resolution	X-RAY DIFFRACTION	2.8	74
4	9O3H\|1\|1y	Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with macrolide erythromycin, mRNA, aminoacylated A-site Lys-tRNAlys, P-site fMRC-peptidyl-tRNAmet, and deacylated E-site tRNAlys at 2.65A resolution	X-RAY DIFFRACTION	2.65	74
5	9O3J\|1\|1y	Crystal structure of the wild-type drug-free Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A-site Lys-tRNAlys, P-site fMRC-peptidyl-tRNAmet, and deacylated E-site tRNAlys at 2.60A resolution	X-RAY DIFFRACTION	2.6	74
6	9O3K\|1\|1y	Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with macrolide erythromycin, mRNA, aminoacylated A-site Lys-tRNAlys, P-site fMAC-peptidyl-tRNAmet, and deacylated E-site tRNAlys at 2.70A resolution	X-RAY DIFFRACTION	2.7	74
7	9O3H\|1\|2y	Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with macrolide erythromycin, mRNA, aminoacylated A-site Lys-tRNAlys, P-site fMRC-peptidyl-tRNAmet, and deacylated E-site tRNAlys at 2.65A resolution	X-RAY DIFFRACTION	2.65	74
8	9O3K\|1\|2y	Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with macrolide erythromycin, mRNA, aminoacylated A-site Lys-tRNAlys, P-site fMAC-peptidyl-tRNAmet, and deacylated E-site tRNAlys at 2.70A resolution	X-RAY DIFFRACTION	2.7	74
9	9O3J\|1\|2y	Crystal structure of the wild-type drug-free Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A-site Lys-tRNAlys, P-site fMRC-peptidyl-tRNAmet, and deacylated E-site tRNAlys at 2.60A resolution	X-RAY DIFFRACTION	2.6	74
10	9O3I\|1\|2y	Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with ketolide telithromycin, mRNA, aminoacylated A-site Lys-tRNAlys, P-site fMRC-peptidyl-tRNAmet, and deacylated E-site tRNAlys at 2.80A resolution	X-RAY DIFFRACTION	2.8	74
11	9O3H\|1\|2w	Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with macrolide erythromycin, mRNA, aminoacylated A-site Lys-tRNAlys, P-site fMRC-peptidyl-tRNAmet, and deacylated E-site tRNAlys at 2.65A resolution	X-RAY DIFFRACTION	2.65	74
12	9O3J\|1\|2w	Crystal structure of the wild-type drug-free Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A-site Lys-tRNAlys, P-site fMRC-peptidyl-tRNAmet, and deacylated E-site tRNAlys at 2.60A resolution	X-RAY DIFFRACTION	2.6	74
13	9O3I\|1\|2w	Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with ketolide telithromycin, mRNA, aminoacylated A-site Lys-tRNAlys, P-site fMRC-peptidyl-tRNAmet, and deacylated E-site tRNAlys at 2.80A resolution	X-RAY DIFFRACTION	2.8	74
14	9O3K\|1\|2w	Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with macrolide erythromycin, mRNA, aminoacylated A-site Lys-tRNAlys, P-site fMAC-peptidyl-tRNAmet, and deacylated E-site tRNAlys at 2.70A resolution	X-RAY DIFFRACTION	2.7	74
15	9O3K\|1\|1w	Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with macrolide erythromycin, mRNA, aminoacylated A-site Lys-tRNAlys, P-site fMAC-peptidyl-tRNAmet, and deacylated E-site tRNAlys at 2.70A resolution	X-RAY DIFFRACTION	2.7	74
16	9O3I\|1\|1w	Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with ketolide telithromycin, mRNA, aminoacylated A-site Lys-tRNAlys, P-site fMRC-peptidyl-tRNAmet, and deacylated E-site tRNAlys at 2.80A resolution	X-RAY DIFFRACTION	2.8	74
17	9O3H\|1\|1w	Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with macrolide erythromycin, mRNA, aminoacylated A-site Lys-tRNAlys, P-site fMRC-peptidyl-tRNAmet, and deacylated E-site tRNAlys at 2.65A resolution	X-RAY DIFFRACTION	2.65	74
18	9O3J\|1\|1w	Crystal structure of the wild-type drug-free Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A-site Lys-tRNAlys, P-site fMRC-peptidyl-tRNAmet, and deacylated E-site tRNAlys at 2.60A resolution	X-RAY DIFFRACTION	2.6	74
19	9RVC\|1\|Y	staphylococcus aureus 70S initiation complex with natural mRNA	ELECTRON MICROSCOPY	2.9	76
20	7N1P\|1\|Pt	Elongating 70S ribosome complex in a classical pre-translocation (PRE-C) conformation	ELECTRON MICROSCOPY	2.33	76
21	7N31\|1\|Pt	Elongating 70S ribosome complex in a post-translocation (POST) conformation	ELECTRON MICROSCOPY	2.69	76
22	7N2C\|1\|Pt	Elongating 70S ribosome complex in a fusidic acid-stalled intermediate state of translocation bound to EF-G(GDP) (INT2)	ELECTRON MICROSCOPY	2.72	76
23	7N2U\|1\|Pt	Elongating 70S ribosome complex in a hybrid-H1 pre-translocation (PRE-H1) conformation	ELECTRON MICROSCOPY	2.53	76
24	7N30\|1\|Pt	Elongating 70S ribosome complex in a hybrid-H2* pre-translocation (PRE-H2*) conformation	ELECTRON MICROSCOPY	2.66	76
25	8BHJ\|1\|5	Elongating E. coli 70S ribosome containing deacylated tRNA(iMet) in the P-site and Am6AA mRNA codon with cognate dipeptidyl-tRNA(Lys) in the A-site	ELECTRON MICROSCOPY	2.81	76
26	8BH4\|1\|5	Elongating E. coli 70S ribosome containing deacylated tRNA(iMet) in the P-site and AAm6A mRNA codon with cognate dipeptidyl-tRNA(Lys) in the A-site	ELECTRON MICROSCOPY	2.62	76
27	8BF7\|1\|5	Elongating E. coli 70S ribosome containing deacylated tRNA(iMet) in the P-site and AAA mRNA codon with cognate dipeptidyl-tRNA(Lys) in the A-site	ELECTRON MICROSCOPY	2.33	76
28	8BHN\|1\|5	Elongating E. coli 70S ribosome containing deacylated tRNA(iMet) in the P-site and m6AAA mRNA codon with cognate dipeptidyl-tRNA(Lys) in the A-site	ELECTRON MICROSCOPY	2.85	76
29	7ZTA\|1\|PTR1	Structure of an Escherichia coli 70S ribosome stalled by Tetracenomycin X during translation of an MAAAPQK(C) peptide	ELECTRON MICROSCOPY	2.7	73
30	5IB7\|1\|1L	Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet, near-cognate tRNALys with U-G mismatch in the A-site and antibiotic paromomycin	X-RAY DIFFRACTION	2.99	66
31	5E81\|1\|1L	Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with wobble pair	X-RAY DIFFRACTION	2.95	69
32	5E81\|1\|1K	Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with wobble pair	X-RAY DIFFRACTION	2.95	72
33	5IB7\|1\|1K	Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet, near-cognate tRNALys with U-G mismatch in the A-site and antibiotic paromomycin	X-RAY DIFFRACTION	2.99	72

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.

Coloring options: Nucleotide numbers

Equivalence class NR_3.0_19831.3 Current

Release history

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