Equivalence class NR_3.0_21280.30 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 7O7Y|1|A2 (rep) | Small subunit ribosomal RNA | 18S rRNA | Oryctolagus cuniculus | Eukarya | RF01960 | Rabbit 80S ribosome stalled close to the mutated SARS-CoV-2 slippery site by a pseudoknot (high resolution) | Electron microscopy | 2.2 | 2021-06-02 |
| 2 | 7OYD|1|9 | Small subunit ribosomal RNA | 18S rRNA | Oryctolagus cuniculus | Eukarya | RF01960 | Cryo-EM structure of a rabbit 80S ribosome with zebrafish Dap1b | Electron microscopy | 2.3 | 2022-07-20 |
| 3 | 7O7Z|1|A2 | Small subunit ribosomal RNA | 18S rRNA | Oryctolagus cuniculus | Eukarya | RF01960 | Rabbit 80S ribosome stalled close to the mutated SARS-CoV-2 slippery site by a pseudoknot (classified for pseudoknot) | Electron microscopy | 2.4 | 2021-06-02 |
| 4 | 8SCB|1|9 | Small subunit ribosomal RNA | 18S_rRNA | Oryctolagus cuniculus | Eukarya | RF01960 | Terminating ribosome with SRI-41315 | Electron microscopy | 2.5 | 2023-12-27 |
| 5 | 7JQB|1|A | Small subunit ribosomal RNA | rRNA | Oryctolagus cuniculus | Eukarya | RF01960 | SARS-CoV-2 Nsp1 and rabbit 40S ribosome complex | Electron microscopy | 2.7 | 2020-12-02 |
| 6 | 7ZJW|1|S2 | Small subunit ribosomal RNA | 18S rRNA | Oryctolagus cuniculus | Eukarya | RF01960 | Rabbit 80S ribosome as it decodes the Sec-UGA codon | Electron microscopy | 2.8 | 2022-10-19 |
| 7 | 7UCK|1|9 | Small subunit ribosomal RNA | 18S rRNA | Oryctolagus cuniculus | Eukarya | RF01960 | 80S translation initiation complex with ac4c(-1) mRNA and Harringtonine | Electron microscopy | 2.8 | 2022-06-01 |
| 8 | 6SGC|1|A1 | Small subunit ribosomal RNA | 18S ribosomal RNA | Oryctolagus cuniculus | Eukarya | RF01960 | Rabbit 80S ribosome stalled on a poly(A) tail | Electron microscopy | 2.8 | 2019-12-04 |
| 9 | 7TOR|1|A18S | Small subunit ribosomal RNA | 18S rRNA | Oryctolagus cuniculus | Eukarya | RF01960 | Mammalian 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein GR20 | Electron microscopy | 2.9 | 2022-05-25 |
| 10 | 7O80|1|A2 | Small subunit ribosomal RNA | 18S rRNA | Oryctolagus cuniculus | Eukarya | RF01960 | Rabbit 80S ribosome in complex with eRF1 and ABCE1 stalled at the STOP codon in the mutated SARS-CoV-2 slippery site | Electron microscopy | 2.9 | 2021-06-02 |
| 11 | 8P2K|1|A2 | Small subunit ribosomal RNA | 18s rRNA | Oryctolagus cuniculus | Eukarya | RF01960 | Ternary complex of translating ribosome, NAC and METAP1 | Electron microscopy | 2.9 | 2023-07-19 |
| 12 | 6YAL|1|2 | Small subunit ribosomal RNA | 18S ribosomal RNA | Oryctolagus cuniculus | Eukarya | RF01960 | Mammalian 48S late-stage initiation complex with beta-globin mRNA | Electron microscopy | 3 | 2020-04-08 |
| 13 | 6R5Q|1|K | Small subunit ribosomal RNA | 18S ribosomal RNA | Oryctolagus cuniculus | Eukarya | RF01960 | Structure of XBP1u-paused ribosome nascent chain complex (post-state) | Electron microscopy | 3 | 2019-07-10 |
Release history
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
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Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
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Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.
| #S | View | PDB | Title | Method | Resolution | Length |
|---|---|---|---|---|---|---|
| 1 | 6YAL|1|2 | Mammalian 48S late-stage initiation complex with beta-globin mRNA | ELECTRON MICROSCOPY | 3 | 1743 | |
| 2 | 8SCB|1|9 | Terminating ribosome with SRI-41315 | ELECTRON MICROSCOPY | 2.5 | 1630 | |
| 3 | 7O80|1|A2 | Rabbit 80S ribosome in complex with eRF1 and ABCE1 stalled at the STOP codon in the mutated SARS-CoV-2 slippery site | ELECTRON MICROSCOPY | 2.9 | 1688 | |
| 4 | 7O7Y|1|A2 | Rabbit 80S ribosome stalled close to the mutated SARS-CoV-2 slippery site by a pseudoknot (high resolution) | ELECTRON MICROSCOPY | 2.2 | 1688 | |
| 5 | 7O7Z|1|A2 | Rabbit 80S ribosome stalled close to the mutated SARS-CoV-2 slippery site by a pseudoknot (classified for pseudoknot) | ELECTRON MICROSCOPY | 2.4 | 1688 | |
| 6 | 8P2K|1|A2 | Ternary complex of translating ribosome, NAC and METAP1 | ELECTRON MICROSCOPY | 2.9 | 1688 | |
| 7 | 7ZJW|1|S2 | Rabbit 80S ribosome as it decodes the Sec-UGA codon | ELECTRON MICROSCOPY | 2.8 | 1689 | |
| 8 | 7UCK|1|9 | 80S translation initiation complex with ac4c(-1) mRNA and Harringtonine | ELECTRON MICROSCOPY | 2.8 | 1664 | |
| 9 | 7TOR|1|A18S | Mammalian 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein GR20 | ELECTRON MICROSCOPY | 2.9 | 1691 | |
| 10 | 6R5Q|1|K | Structure of XBP1u-paused ribosome nascent chain complex (post-state) | ELECTRON MICROSCOPY | 3 | 1698 | |
| 11 | 6SGC|1|A1 | Rabbit 80S ribosome stalled on a poly(A) tail | ELECTRON MICROSCOPY | 2.8 | 1697 | |
| 12 | 7JQB|1|A | SARS-CoV-2 Nsp1 and rabbit 40S ribosome complex | ELECTRON MICROSCOPY | 2.7 | 1697 | |
| 13 | 7OYD|1|9 | Cryo-EM structure of a rabbit 80S ribosome with zebrafish Dap1b | ELECTRON MICROSCOPY | 2.3 | 1664 |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.
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