Equivalence class NR_3.0_24191.3 Current
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | #NTs | Date |
|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 9Q87|1|6 (rep) | A-site tRNA | Escherichia coli B | Principles of ion binding to RNA inferred from the analysis of a 1.55 Angstrom resolution bacterial ribosome structure - Part I: Mg2+ | Electron microscopy | 1.55 | 2 | 2025-05-14 | |||
| 2 | 7QIW|1|s | tRNA | Solanum lycopersicum | Specific features and methylation sites of a plant ribosome. 60S ribosomal subunit. | Electron microscopy | 2.35 | 2 | 2022-07-13 | |||
| 3 | 7QIZ|1|s | tRNA | Solanum lycopersicum | Specific features and methylation sites of a plant 80S ribosome | Electron microscopy | 2.38 | 2 | 2022-08-03 | |||
| 4 | 7K00|1|5 | E-site tRNA | Escherichia coli | Structure of the Bacterial Ribosome at 2 Angstrom Resolution | Electron microscopy | 1.98 | 2 | 2020-09-23 | |||
| 5 | 1VY6|1|AW | Cytidine-Puromycin | synthetic construct | Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing short substrate-mimic Cytidine-Puromycin in the A site and acylated tRNA in the P site. | X-ray diffraction | 2.9 | 2 | 2014-08-20 | |||
| 6 | 1VY6|1|CW | Cytidine-Puromycin | synthetic construct | Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing short substrate-mimic Cytidine-Puromycin in the A site and acylated tRNA in the P site. | X-ray diffraction | 2.9 | 2 | 2014-08-20 | |||
| 7 | 8AYE|1|5 | E-site tRNA | Escherichia coli | E. coli 70S ribosome bound to thermorubin and fMet-tRNA | Electron microscopy | 1.96 | 2 | 2023-03-01 | |||
| 8 | 8QOA|1|5 | E-site tRNA | Escherichia coli BW25113 | Structure of SecM-stalled Escherichia coli 70S ribosome | Electron microscopy | 2 | 2 | 2024-03-20 |
Release history
| Release | 4.0 |
|---|---|
| Date | 2025-08-13 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
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Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
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Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.
| #S | View | PDB | Title | Method | Resolution | #NTs |
|---|---|---|---|---|---|---|
| 1 | 9Q87|1|6 | Principles of ion binding to RNA inferred from the analysis of a 1.55 Angstrom resolution bacterial ribosome structure - Part I: Mg2+ | ELECTRON MICROSCOPY | 1.55 | 2 | |
| 2 | 7QIZ|1|s | Specific features and methylation sites of a plant 80S ribosome | ELECTRON MICROSCOPY | 2.38 | 2 | |
| 3 | 7QIW|1|s | Specific features and methylation sites of a plant ribosome. 60S ribosomal subunit. | ELECTRON MICROSCOPY | 2.35 | 2 | |
| 4 | 8AYE|1|5 | E. coli 70S ribosome bound to thermorubin and fMet-tRNA | ELECTRON MICROSCOPY | 1.96 | 2 | |
| 5 | 1VY6|1|AW | Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing short substrate-mimic Cytidine-Puromycin in the A site and acylated tRNA in the P site. | X-RAY DIFFRACTION | 2.9 | 2 | |
| 6 | 7K00|1|5 | Structure of the Bacterial Ribosome at 2 Angstrom Resolution | ELECTRON MICROSCOPY | 1.98 | 2 | |
| 7 | 8QOA|1|5 | Structure of SecM-stalled Escherichia coli 70S ribosome | ELECTRON MICROSCOPY | 2 | 2 | |
| 8 | 1VY6|1|CW | Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing short substrate-mimic Cytidine-Puromycin in the A site and acylated tRNA in the P site. | X-RAY DIFFRACTION | 2.9 | 2 |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.
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