RNA 3D Hub //

Equivalence class NR_3.0_33912.6 Obsolete

Showing 1 to 5 of 5 entries
#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodRes. Å#NTsDate
17RIQ|1|R (rep)RNAsynthetic constructRNA polymerase II elongation complex scaffold 1 without polyamideX-ray diffraction392022-01-12
27RIM|1|RRNAsynthetic constructRNA polymerase II elongation complex with hairpin polyamide Py-Im 1, scaffold 1X-ray diffraction2.992022-01-12
38SY7|1|RRNA oligomersynthetic constructE. coli DNA-directed RNA polymerase transcription elongation complex bound the unnatural dB-STP base pair in the active siteElectron microscopy2.6592023-12-27
48SY5|1|RRNA oligomersynthetic constructE. coli DNA-directed RNA polymerase transcription elongation complex bound the unnatural dS-BTP base pair in the active siteElectron microscopy2.792023-12-27
59JA1|1|RRNA (5'-R(P*AP*UP*CP*GP*AP*GP*AP*GP*G)-3')synthetic constructThe RNA polymerase II elongation complex from Saccharomyces cerevisiaeElectron microscopy2.9892024-09-04

Release history

Release3.3513.3523.3533.3543.3553.3563.3573.3583.3593.3603.3613.3623.3633.3643.3653.3663.3673.3683.3693.3703.3713.3723.3733.3743.3753.3763.377
Date2024-09-042024-09-112024-09-182024-09-252024-10-022024-10-092024-10-162024-10-232024-10-302024-11-062024-11-132024-11-202024-11-272024-12-042024-12-112024-12-182024-12-252025-01-012025-01-082025-01-152025-01-222025-01-292025-02-052025-02-122025-02-192025-02-262025-03-05

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child

Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.

Showing 1 to 5 of 5 entries
#SViewPDBTitleMethodResolution#NTs
19JA1|1|RThe RNA polymerase II elongation complex from Saccharomyces cerevisiaeELECTRON MICROSCOPY2.989
27RIM|1|RRNA polymerase II elongation complex with hairpin polyamide Py-Im 1, scaffold 1X-RAY DIFFRACTION2.99
37RIQ|1|RRNA polymerase II elongation complex scaffold 1 without polyamideX-RAY DIFFRACTION39
48SY5|1|RE. coli DNA-directed RNA polymerase transcription elongation complex bound the unnatural dS-BTP base pair in the active siteELECTRON MICROSCOPY2.79
58SY7|1|RE. coli DNA-directed RNA polymerase transcription elongation complex bound the unnatural dB-STP base pair in the active siteELECTRON MICROSCOPY2.659

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.

9JA1|1|R:9JA1|1|R = 09JA1|1|R:7RIM|1|R = 0.10769JA1|1|R:7RIQ|1|R = 0.10359JA1|1|R:8SY5|1|R = 0.22069JA1|1|R:8SY7|1|R = 0.27047RIM|1|R:9JA1|1|R = 0.10767RIM|1|R:7RIM|1|R = 07RIM|1|R:7RIQ|1|R = 0.10067RIM|1|R:8SY5|1|R = 0.24387RIM|1|R:8SY7|1|R = 0.23907RIQ|1|R:9JA1|1|R = 0.10357RIQ|1|R:7RIM|1|R = 0.10067RIQ|1|R:7RIQ|1|R = 07RIQ|1|R:8SY5|1|R = 0.18987RIQ|1|R:8SY7|1|R = 0.19658SY5|1|R:9JA1|1|R = 0.22068SY5|1|R:7RIM|1|R = 0.24388SY5|1|R:7RIQ|1|R = 0.18988SY5|1|R:8SY5|1|R = 08SY5|1|R:8SY7|1|R = 0.09998SY7|1|R:9JA1|1|R = 0.27048SY7|1|R:7RIM|1|R = 0.23908SY7|1|R:7RIQ|1|R = 0.19658SY7|1|R:8SY5|1|R = 0.09998SY7|1|R:8SY7|1|R = 09JA1|1|R7RIM|1|R7RIQ|1|R8SY5|1|R8SY7|1|RDiscrepancy0.000.050.100.150.200.25

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