#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodRes. ÅDate
18OLV|1|A (rep)Group II catalytic intron D1-D4-1Group IIC intronOceanobacillus iheyensisBacteriaRF01998Structure of Oceanobacillus iheyensis group II intron in the presence of K+, Mg2+ and ARN25850X-ray diffraction2.812024-06-19
24FAR|1|AGroup II catalytic intron D1-D4-1Group IIC intronOceanobacillus iheyensisBacteriaRF01998Structure of Oceanobacillus iheyensis group II intron in the presence of K+, Mg2+ and 5'-exonX-ray diffraction2.862012-11-14
38OLS|1|AGroup II catalytic intron D1-D4-1Group IIC intronOceanobacillus iheyensisBacteriaRF01998Structure of Oceanobacillus iheyensis group II intron in the presence of K+, Mg2+ and intronistat BX-ray diffraction32024-06-19
44E8N|1|AGroup II catalytic intron D1-D4-1Group IIC intronOceanobacillus iheyensisBacteriaRF01998Structure of Oceanobacillus iheyensis group II intron in a ligand-free state in the presence of NH4+ and Mg2+X-ray diffraction2.962012-11-14
54FAU|1|AGroup II catalytic intron D1-D4-1Group IIC intronOceanobacillus iheyensisBacteriaRF01998Structure of Oceanobacillus iheyensis group II intron in the presence of Li+, Mg2+ and 5'-exonX-ray diffraction2.872012-11-14
64E8Q|1|AGroup II catalytic intron D1-D4-1Group IIC intronOceanobacillus iheyensisBacteriaRF01998Structure of Oceanobacillus iheyensis group II intron in a ligand-free state in the presence of Tl+ and Mg2+X-ray diffraction2.842012-11-14
74Y1O|1|AGroup II catalytic intron D1-D4-3group II intron, domain 1Oceanobacillus iheyensisBacteriaRF02001Oceanobacillus iheyensis group II intron domain 1X-ray diffraction2.952015-10-14
84Y1O|1|BGroup II catalytic intron D1-D4-3group II intron, domain 1Oceanobacillus iheyensisBacteriaRF02001Oceanobacillus iheyensis group II intron domain 1X-ray diffraction2.952015-10-14
94FAW|1|AGroup II catalytic intron D1-D4-15'-R(*A*UP*UP*UP*AP*UP*UP*A)-3', Group IIC intronOceanobacillus iheyensisBacteriaRF01998Structure of Oceanobacillus iheyensis group II intron in the presence of K+, Mg2+ and a hydrolyzed oligonucleotide fragmentX-ray diffraction2.72012-11-14
104Y1N|1|BGroup II catalytic intron D1-D4-3group II intron, domain 1Oceanobacillus iheyensisBacteriaRF02001Oceanobacillus iheyensis group II intron domain 1 with iridium hexamineX-ray diffraction32015-10-14
113G78|1|AGroup II catalytic intron D1-D4-1Group II intron, Ligated EXON productOceanobacillus iheyensisBacteriaRF01998Insight into group II intron catalysis from revised crystal structureX-ray diffraction2.82010-02-16
124Y1N|1|AGroup II catalytic intron D1-D4-3group II intron, domain 1Oceanobacillus iheyensisBacteriaRF02001Oceanobacillus iheyensis group II intron domain 1 with iridium hexamineX-ray diffraction32015-10-14

Release history

Release3.3403.3413.3423.3433.3443.3453.3463.3473.3483.3493.3503.3513.3523.3533.3543.3553.3563.3573.3583.3593.3603.3613.3623.363
Date2024-06-192024-06-262024-07-032024-07-102024-07-172024-07-252024-07-312024-08-072024-08-142024-08-212024-08-282024-09-042024-09-112024-09-182024-09-252024-10-022024-10-092024-10-162024-10-232024-10-302024-11-062024-11-132024-11-202024-11-27

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child

Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.

#SViewPDBTitleMethodResolutionLength
14E8Q|1|AStructure of Oceanobacillus iheyensis group II intron in a ligand-free state in the presence of Tl+ and Mg2+X-RAY DIFFRACTION2.84393
24E8N|1|AStructure of Oceanobacillus iheyensis group II intron in a ligand-free state in the presence of NH4+ and Mg2+X-RAY DIFFRACTION2.96393
38OLS|1|AStructure of Oceanobacillus iheyensis group II intron in the presence of K+, Mg2+ and intronistat BX-RAY DIFFRACTION3390
48OLV|1|AStructure of Oceanobacillus iheyensis group II intron in the presence of K+, Mg2+ and ARN25850X-RAY DIFFRACTION2.81394
54FAW|1|AStructure of Oceanobacillus iheyensis group II intron in the presence of K+, Mg2+ and a hydrolyzed oligonucleotide fragmentX-RAY DIFFRACTION2.7390
64FAU|1|AStructure of Oceanobacillus iheyensis group II intron in the presence of Li+, Mg2+ and 5'-exonX-RAY DIFFRACTION2.87395
74FAR|1|AStructure of Oceanobacillus iheyensis group II intron in the presence of K+, Mg2+ and 5'-exonX-RAY DIFFRACTION2.86390
83G78|1|AInsight into group II intron catalysis from revised crystal structureX-RAY DIFFRACTION2.8389
94Y1O|1|BOceanobacillus iheyensis group II intron domain 1X-RAY DIFFRACTION2.95256
104Y1N|1|AOceanobacillus iheyensis group II intron domain 1 with iridium hexamineX-RAY DIFFRACTION3249
114Y1N|1|BOceanobacillus iheyensis group II intron domain 1 with iridium hexamineX-RAY DIFFRACTION3259
124Y1O|1|AOceanobacillus iheyensis group II intron domain 1X-RAY DIFFRACTION2.95258

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.


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