NR_3.0_35054.7

Members (14)
History
Heat map

#	IFE	Standardized name	Molecule	Organism	Source	Rfam	Title	Method	Res. Å	#NTs	Date
1	8OLV\|1\|A (rep)	Group II catalytic intron D1-D4-3	Group IIC intron	Oceanobacillus iheyensis	Bacteria	RF02001	Structure of Oceanobacillus iheyensis group II intron in the presence of K+, Mg2+ and ARN25850	X-ray diffraction	2.81	394	2024-06-19
2	4FAR\|1\|A	Group II catalytic intron D1-D4-3	Group IIC intron	Oceanobacillus iheyensis	Bacteria	RF02001	Structure of Oceanobacillus iheyensis group II intron in the presence of K+, Mg2+ and 5'-exon	X-ray diffraction	2.86	390	2012-11-14
3	8OLS\|1\|A	Group II catalytic intron D1-D4-3	Group IIC intron	Oceanobacillus iheyensis	Bacteria	RF02001	Structure of Oceanobacillus iheyensis group II intron in the presence of K+, Mg2+ and intronistat B	X-ray diffraction	3	390	2024-06-19
4	4E8N\|1\|A	Group II catalytic intron D1-D4-3	Group IIC intron	Oceanobacillus iheyensis	Bacteria	RF02001	Structure of Oceanobacillus iheyensis group II intron in a ligand-free state in the presence of NH4+ and Mg2+	X-ray diffraction	2.96	393	2012-11-14
5	4FAU\|1\|A	Group II catalytic intron D1-D4-3	Group IIC intron	Oceanobacillus iheyensis	Bacteria	RF02001	Structure of Oceanobacillus iheyensis group II intron in the presence of Li+, Mg2+ and 5'-exon	X-ray diffraction	2.87	393	2012-11-14
6	4E8Q\|1\|A	Group II catalytic intron D1-D4-3	Group IIC intron	Oceanobacillus iheyensis	Bacteria	RF02001	Structure of Oceanobacillus iheyensis group II intron in a ligand-free state in the presence of Tl+ and Mg2+	X-ray diffraction	2.84	393	2012-11-14
7	4Y1O\|1\|A	Group II catalytic intron D1-D4-3	group II intron, domain 1	Oceanobacillus iheyensis	Bacteria	RF02001	Oceanobacillus iheyensis group II intron domain 1	X-ray diffraction	2.95	258	2015-10-14
8	4Y1O\|1\|B	Group II catalytic intron D1-D4-3	group II intron, domain 1	Oceanobacillus iheyensis	Bacteria	RF02001	Oceanobacillus iheyensis group II intron domain 1	X-ray diffraction	2.95	256	2015-10-14
9	4FAW\|1\|A	Group II catalytic intron D1-D4-3	5'-R(AUPUPUPAPUPUPA)-3', Group IIC intron	Oceanobacillus iheyensis	Bacteria	RF02001	Structure of Oceanobacillus iheyensis group II intron in the presence of K+, Mg2+ and a hydrolyzed oligonucleotide fragment	X-ray diffraction	2.7	390	2012-11-14
10	3G78\|1\|A	Group II catalytic intron D1-D4-3	Group II intron, Ligated EXON product	Oceanobacillus iheyensis	Bacteria	RF02001	Insight into group II intron catalysis from revised crystal structure	X-ray diffraction	2.8	389	2010-02-16
11	4Y1N\|1\|B	Group II catalytic intron D1-D4-3	group II intron, domain 1	Oceanobacillus iheyensis	Bacteria	RF02001	Oceanobacillus iheyensis group II intron domain 1 with iridium hexamine	X-ray diffraction	3	259	2015-10-14
12	4Y1N\|1\|A	Group II catalytic intron D1-D4-3	group II intron, domain 1	Oceanobacillus iheyensis	Bacteria	RF02001	Oceanobacillus iheyensis group II intron domain 1 with iridium hexamine	X-ray diffraction	3	249	2015-10-14
13	9C6J\|1\|A	Group II catalytic intron D1-D4-3	Group IIC intron embedded with the TPP riboswitch	Oceanobacillus iheyensis	Bacteria	RF02001	Group IIC intron embedded with the TPP riboswitch	Electron microscopy	2.41	387	2024-12-04
14	9C6I\|1\|A	Group II catalytic intron D1-D4-3	Group IIC Intron	Oceanobacillus iheyensis	Bacteria	RF02001	Cryo-EM structure of a group IIC intron RNA	Electron microscopy	2.56	393	2024-12-04

Release history

Release	3.378	3.379	3.380	3.381	3.382	3.383	3.384	3.385	3.386	3.387	3.388	3.389	3.390	3.391	3.392
Date	2025-03-13	2025-03-19	2025-03-26	2025-04-02	2025-04-09	2025-04-16	2025-04-23	2025-04-30	2025-05-07	2025-05-14	2025-05-21	2025-05-28	2025-06-04	2025-06-11	2025-06-18

Parents

This class	Parent classes	Release id	Intersection	Added to this class	Only in parent

Children

This class	Descendant classes	Release id	Intersection	Only in this class	Added to child

Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.

#S	View	PDB	Title	Method	Resolution	#NTs
1		4E8Q\|1\|A	Structure of Oceanobacillus iheyensis group II intron in a ligand-free state in the presence of Tl+ and Mg2+	X-RAY DIFFRACTION	2.84	393
2		4E8N\|1\|A	Structure of Oceanobacillus iheyensis group II intron in a ligand-free state in the presence of NH4+ and Mg2+	X-RAY DIFFRACTION	2.96	393
3		8OLS\|1\|A	Structure of Oceanobacillus iheyensis group II intron in the presence of K+, Mg2+ and intronistat B	X-RAY DIFFRACTION	3	390
4		8OLV\|1\|A	Structure of Oceanobacillus iheyensis group II intron in the presence of K+, Mg2+ and ARN25850	X-RAY DIFFRACTION	2.81	394
5		4FAW\|1\|A	Structure of Oceanobacillus iheyensis group II intron in the presence of K+, Mg2+ and a hydrolyzed oligonucleotide fragment	X-RAY DIFFRACTION	2.7	390
6		4FAU\|1\|A	Structure of Oceanobacillus iheyensis group II intron in the presence of Li+, Mg2+ and 5'-exon	X-RAY DIFFRACTION	2.87	393
7		4FAR\|1\|A	Structure of Oceanobacillus iheyensis group II intron in the presence of K+, Mg2+ and 5'-exon	X-RAY DIFFRACTION	2.86	390
8		3G78\|1\|A	Insight into group II intron catalysis from revised crystal structure	X-RAY DIFFRACTION	2.8	389
9		9C6J\|1\|A	Group IIC intron embedded with the TPP riboswitch	ELECTRON MICROSCOPY	2.41	387
10		9C6I\|1\|A	Cryo-EM structure of a group IIC intron RNA	ELECTRON MICROSCOPY	2.56	393
11		4Y1O\|1\|B	Oceanobacillus iheyensis group II intron domain 1	X-RAY DIFFRACTION	2.95	256
12		4Y1N\|1\|A	Oceanobacillus iheyensis group II intron domain 1 with iridium hexamine	X-RAY DIFFRACTION	3	249
13		4Y1N\|1\|B	Oceanobacillus iheyensis group II intron domain 1 with iridium hexamine	X-RAY DIFFRACTION	3	259
14		4Y1O\|1\|A	Oceanobacillus iheyensis group II intron domain 1	X-RAY DIFFRACTION	2.95	258

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.

Coloring options: Nucleotide numbers

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