Equivalence class NR_3.0_40389.1 Current
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | #NTs | Date |
|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 7ZHG|1|2 (rep) | Small subunit ribosomal RNA | mRNA, rRNA 16S | Pyrococcus abyssi GE5 | Archaea | RF01959 | High-resolution cryo-EM structure of Pyrococcus abyssi 30S ribosomal subunit bound to mRNA and initiator tRNA anticodon stem-loop | Electron microscopy | 2.25 | 1497 | 2022-06-29 |
| 2 | 9SRE|1|2 | Small subunit ribosomal RNA | rRNA 16S | Pyrococcus abyssi GE5 | Archaea | RF01959 | Cryo-EM structure of P. abyssi 70S ribosome in complex with hibernation factor HibA (PTC conformation with E-site tRNA) | Electron microscopy | 2.11 | 1496 | 2026-07-22 |
| 3 | 9SRD|1|2 | Small subunit ribosomal RNA | rRNA 16S | Pyrococcus abyssi GE5 | Archaea | RF01959 | Cryo-EM structure of P. abyssi 70S ribosome in complex with hibernation factor HibA (HibA-uL5 conformation) | Electron microscopy | 2.1 | 1496 | 2026-05-13 |
| 4 | 7ZAH|1|2 | Small subunit ribosomal RNA | 16S rRNA, mRNA | Pyrococcus abyssi GE5 | Archaea | RF01959 | Cryo-EM structure of an archaeal aIF5B bound to the ssu translation initiation complex | Electron microscopy | 2.7 | 1497 | 2022-08-03 |
| 5 | 9SRC|1|2 | Small subunit ribosomal RNA | rRNA 16S | Pyrococcus abyssi GE5 | Archaea | RF01959 | Cryo-EM structure of P. abyssi 70S ribosome in complex with hibernation factor HibA in PTC conformation | Electron microscopy | 2.1 | 1496 | 2026-07-22 |
| 6 | 9T7H|1|2 | Small subunit ribosomal RNA | rRNA 16S | Pyrococcus abyssi GE5 | Archaea | RF01959 | Cryo-EM structure of P. abyssi 70S ribosome in complex with hibernation factor HibA (L1 stalk conformation) | Electron microscopy | 2.1 | 1496 | 2026-07-22 |
| 7 | 7ZAI|1|2 | Small subunit ribosomal RNA | 16S rRNA, mRNA | Pyrococcus abyssi GE5 | Archaea | RF01959 | Cryo-EM structure of a Pyrococcus abyssi 30S bound to Met-initiator tRNA, mRNA and aIF1A. | Electron microscopy | 2.6 | 1497 | 2022-07-13 |
| 8 | 9SRB|1|2 | Small subunit ribosomal RNA | rRNA 16S | Pyrococcus abyssi GE5 | Archaea | RF01959 | Cryo-EM structure of P. abyssi 70S ribosome in complex with hibernation factor HibA and SBDS | Electron microscopy | 2.3 | 1496 | 2026-07-22 |
| 9 | 9SRA|1|2 | Small subunit ribosomal RNA | rRNA 16S | Pyrococcus abyssi GE5 | Archaea | RF01959 | Cryo-EM structure of P. abyssi HibA:ribosome with an SD:antiSD duplex | Electron microscopy | 2.2 | 1497 | 2026-07-22 |
| 10 | 7ZAG|1|2 | Small subunit ribosomal RNA | mRNA, rRNA | Pyrococcus abyssi GE5 | Archaea | RF01959 | Cryo-EM structure of a Pyrococcus abyssi 30S bound to Met-initiator tRNA,mRNA, aIF1A and the C-terminal domain of aIF5B. | Electron microscopy | 2.77 | 1497 | 2022-08-03 |
Release history
| Release | 4.49 |
|---|---|
| Date | 2026-07-22 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
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Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
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Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.
| #S | View | PDB | Title | Method | Resolution | #NTs |
|---|---|---|---|---|---|---|
| 1 | 9SRB|1|2 | Cryo-EM structure of P. abyssi 70S ribosome in complex with hibernation factor HibA and SBDS | ELECTRON MICROSCOPY | 2.3 | 1496 | |
| 2 | 9T7H|1|2 | Cryo-EM structure of P. abyssi 70S ribosome in complex with hibernation factor HibA (L1 stalk conformation) | ELECTRON MICROSCOPY | 2.1 | 1496 | |
| 3 | 9SRD|1|2 | Cryo-EM structure of P. abyssi 70S ribosome in complex with hibernation factor HibA (HibA-uL5 conformation) | ELECTRON MICROSCOPY | 2.1 | 1496 | |
| 4 | 9SRC|1|2 | Cryo-EM structure of P. abyssi 70S ribosome in complex with hibernation factor HibA in PTC conformation | ELECTRON MICROSCOPY | 2.1 | 1496 | |
| 5 | 9SRE|1|2 | Cryo-EM structure of P. abyssi 70S ribosome in complex with hibernation factor HibA (PTC conformation with E-site tRNA) | ELECTRON MICROSCOPY | 2.11 | 1496 | |
| 6 | 9SRA|1|2 | Cryo-EM structure of P. abyssi HibA:ribosome with an SD:antiSD duplex | ELECTRON MICROSCOPY | 2.2 | 1497 | |
| 7 | 7ZHG|1|2 | High-resolution cryo-EM structure of Pyrococcus abyssi 30S ribosomal subunit bound to mRNA and initiator tRNA anticodon stem-loop | ELECTRON MICROSCOPY | 2.25 | 1497 | |
| 8 | 7ZAI|1|2 | Cryo-EM structure of a Pyrococcus abyssi 30S bound to Met-initiator tRNA, mRNA and aIF1A. | ELECTRON MICROSCOPY | 2.6 | 1497 | |
| 9 | 7ZAG|1|2 | Cryo-EM structure of a Pyrococcus abyssi 30S bound to Met-initiator tRNA,mRNA, aIF1A and the C-terminal domain of aIF5B. | ELECTRON MICROSCOPY | 2.77 | 1497 | |
| 10 | 7ZAH|1|2 | Cryo-EM structure of an archaeal aIF5B bound to the ssu translation initiation complex | ELECTRON MICROSCOPY | 2.7 | 1497 |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.
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