Equivalence class NR_3.0_41610.25 Current
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | #NTs | Date |
|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 9FY2|1|A (rep) | Large subunit ribosomal RNA | 23S rRNA | Bacillus subtilis subsp. subtilis str. 168 | Bacteria | RF02541 | Structure of CliM-stalled Bacillus subtilis 70S ribosome with empty A-site | Electron microscopy | 2.3 | 2729 | 2026-01-14 |
| 2 | 9FY1|1|A | Large subunit ribosomal RNA | 23S rRNA | Bacillus subtilis subsp. subtilis str. 168 | Bacteria | RF02541 | Structure of CliM-stalled Bacillus subtilis 70S ribosome with release factor bound in the A-site | Electron microscopy | 2.3 | 2729 | 2026-01-14 |
| 3 | 9FY3|1|A | Large subunit ribosomal RNA | 23S rRNA | Bacillus subtilis subsp. subtilis str. 168 | Bacteria | RF02541 | Structure of CliM-stalled Bacillus subtilis 70S ribosome with tRNA-Tyr in the A-site | Electron microscopy | 2.8 | 2724 | 2026-01-14 |
| 4 | 7AQC|1|A | Large subunit ribosomal RNA | 23S ribosomal RNA | Bacillus subtilis subsp. subtilis str. 168 | Bacteria | RF02541 | Structure of the bacterial RQC complex (Decoding State) | Electron microscopy | 2.99 | 2820 | 2020-11-25 |
| 5 | 7AS8|1|A | Large subunit ribosomal RNA | 23S rRNA | Bacillus subtilis subsp. subtilis str. 168 | Bacteria | RF02541 | Bacillus subtilis ribosome quality control complex state B. Ribosomal 50S subunit with P-tRNA, RqcH, and RqcP/YabO | Electron microscopy | 2.9 | 2812 | 2020-12-09 |
| 6 | 8BUU|1|A | Large subunit ribosomal RNA | 23S rRNA | Bacillus subtilis subsp. subtilis str. 168 | Bacteria | RF02541 | ARE-ABCF VmlR2 bound to a 70S ribosome | Electron microscopy | 2.9 | 2852 | 2023-04-05 |
| 7 | 9P38|1|A | Large subunit ribosomal RNA | 23S rRNA | Bacillus subtilis | Bacteria | RF02541 | YsxC-GMPPNP treated 44.5SYsxC particles. Class 1. | Electron microscopy | 2.5 | 2116 | 2025-11-12 |
| 8 | 7SAE|1|A | Large subunit ribosomal RNA | RNA (2434-MER) | Bacillus subtilis | Bacteria | RF02541 | 44SR70P Class1 ribosomal particle | Electron microscopy | 3 | 2434 | 2022-03-02 |
| 9 | 9P4I|1|A | Large subunit ribosomal RNA | 23S rRNA | Bacillus subtilis | Bacteria | RF02541 | YsxC-GTP treated 44.5SYsxC particles. Class 5. | Electron microscopy | 2.8 | 2818 | 2025-11-12 |
| 10 | 8S1P|1|A | Large subunit ribosomal RNA | 23S rRNA | Bacillus subtilis subsp. subtilis str. 168 | Bacteria | RF02541 | YlmH bound to PtRNA-50S | Electron microscopy | 1.96 | 2733 | 2024-06-12 |
| 11 | 8QCQ|1|A | Large subunit ribosomal RNA | 23S rRNA | Bacillus subtilis subsp. subtilis str. 168 | Bacteria | RF02541 | B. subtilis ApdA-stalled ribosomal complex | Electron microscopy | 2.3 | 2745 | 2024-03-20 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
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Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
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Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.
| #S | View | PDB | Title | Method | Resolution | #NTs |
|---|---|---|---|---|---|---|
| 1 | 7AS8|1|A | Bacillus subtilis ribosome quality control complex state B. Ribosomal 50S subunit with P-tRNA, RqcH, and RqcP/YabO | ELECTRON MICROSCOPY | 2.9 | 2812 | |
| 2 | 8S1P|1|A | YlmH bound to PtRNA-50S | ELECTRON MICROSCOPY | 1.96 | 2733 | |
| 3 | 9FY2|1|A | Structure of CliM-stalled Bacillus subtilis 70S ribosome with empty A-site | ELECTRON MICROSCOPY | 2.3 | 2729 | |
| 4 | 9FY1|1|A | Structure of CliM-stalled Bacillus subtilis 70S ribosome with release factor bound in the A-site | ELECTRON MICROSCOPY | 2.3 | 2729 | |
| 5 | 9FY3|1|A | Structure of CliM-stalled Bacillus subtilis 70S ribosome with tRNA-Tyr in the A-site | ELECTRON MICROSCOPY | 2.8 | 2724 | |
| 6 | 8QCQ|1|A | B. subtilis ApdA-stalled ribosomal complex | ELECTRON MICROSCOPY | 2.3 | 2745 | |
| 7 | 8BUU|1|A | ARE-ABCF VmlR2 bound to a 70S ribosome | ELECTRON MICROSCOPY | 2.9 | 2852 | |
| 8 | 7AQC|1|A | Structure of the bacterial RQC complex (Decoding State) | ELECTRON MICROSCOPY | 2.99 | 2820 | |
| 9 | 7SAE|1|A | 44SR70P Class1 ribosomal particle | ELECTRON MICROSCOPY | 3 | 2434 | |
| 10 | 9P4I|1|A | YsxC-GTP treated 44.5SYsxC particles. Class 5. | ELECTRON MICROSCOPY | 2.8 | 2818 | |
| 11 | 9P38|1|A | YsxC-GMPPNP treated 44.5SYsxC particles. Class 1. | ELECTRON MICROSCOPY | 2.5 | 2116 |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.
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