#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodRes. Å#NTsDate
18GLP|1|L7 (rep)5S ribosomal RNA5S rRNAHomo sapiensEukaryaRF00001mRNA decoding in human is kinetically and structurally distinct from bacteria (Consensus LSU focused refined structure)Electron microscopy1.671202023-04-19
28A3D|1|B5S ribosomal RNA5S ribosomal RNAHomo sapiensEukaryaRF00001Human mature large subunit of the ribosome with eIF6 and homoharringtonine boundElectron microscopy1.671202023-03-08
38QYX|1|B25S ribosomal RNA5S rRNAHomo sapiensEukaryaRF00001Human 60S ribosomal subunitElectron microscopy1.781192024-12-11
48QOI|1|L75S ribosomal RNA5S rRNA (120-MER)Homo sapiensEukaryaRF00001Structure of the human 80S ribosome at 1.9 A resolution - the molecular role of chemical modifications and ions in RNAElectron microscopy1.91202024-06-12
58YOO|1|L75S ribosomal RNA5S rRNAHomo sapiensEukaryaRF00001Cryo-EM structure of the human 80S ribosome with 100 um TigecyclineElectron microscopy21202024-07-10
69C3H|1|L95S ribosomal RNA5S rRNAHomo sapiensEukaryaRF00001Structure of the CNOT3-bound human 80S ribosome with tRNA-ARG in the P-site.Electron microscopy21202024-12-04
78YOP|1|L75S ribosomal RNA5S rRNAHomo sapiensEukaryaRF00001Cryo-EM structure of the human 80S ribosome with 4 um TigecyclineElectron microscopy2.21202024-07-10
87OW7|1|B5S ribosomal RNA5S rRNAHomo sapiensEukaryaRF00001EIF6-bound large subunit of the human ribosomeElectron microscopy2.21202022-10-05
98QFD|1|75S ribosomal RNA5S rRNAHomo sapiensEukaryaRF00001UFL1 E3 ligase bound 60S ribosomeElectron microscopy2.21192024-02-21
108JDK|1|E5S ribosomal RNA5S ribosomal RNAHomo sapiensEukaryaRF00001Structure of the Human cytoplasmic Ribosome with human tRNA Asp(ManQ34) and mRNA(GAU)Electron microscopy2.261202023-12-06
118G5Y|1|L75S ribosomal RNA5S rRNAHomo sapiensEukaryaRF00001mRNA decoding in human is kinetically and structurally distinct from bacteria (IC state)Electron microscopy2.291202023-04-19
128K2C|1|L75S ribosomal RNA5S rRNAHomo sapiensEukaryaRF00001Cryo-EM structure of the human 80S ribosome with TigecyclineElectron microscopy2.41202024-07-10
138XSX|1|L75S ribosomal RNA5S rRNAHomo sapiensEukaryaRF00001Cryo-EM structure of the human 80S ribosome with Tigecycline, E-tRNA, SERBP1 and eEF2Electron microscopy2.41202024-07-10
148JDL|1|E5S ribosomal RNA5S ribosomal RNAHomo sapiensEukaryaRF00001Structure of the Human cytoplasmic Ribosome with human tRNA Tyr(GalQ34) and mRNA(UAU) (non-rotated state)Electron microscopy2.421202023-12-06
157XNY|1|L25S ribosomal RNA5S rRNAHomo sapiensEukaryaRF00001High resolution cry-EM structure of the human 80S ribosome from SNORD127+/- Kasumi-1 cellsElectron microscopy2.51202023-04-05
168JDJ|1|E5S ribosomal RNA5S ribosomal RNAHomo sapiensEukaryaRF00001Structure of the Human cytoplasmic Ribosome with human tRNA Asp(Q34) and mRNA(GAU)Electron microscopy2.51202023-12-06
178G60|1|L75S ribosomal RNA5S rRNAHomo sapiensEukaryaRF00001mRNA decoding in human is kinetically and structurally distinct from bacteria (CR state)Electron microscopy2.541202023-04-19
188IFE|1|1B5S ribosomal RNA5S ribosomal RNAHomo sapiensEukaryaRF00001Arbekacin-added human 80S ribosomeElectron microscopy2.571202024-02-14
199B0G|1|L75S ribosomal RNA5S rRNAHomo sapiensEukaryaRF00001In situ human Hibernating class4 80S ribosomeElectron microscopy2.571202025-03-19
208FL7|1|L45S ribosomal RNA5S rRNAHomo sapiensEukaryaRF00001Human nuclear pre-60S ribosomal subunit (State J2)Electron microscopy2.551202023-07-12
218FLE|1|L45S ribosomal RNA5S rRNAHomo sapiensEukaryaRF00001Human nuclear pre-60S ribosomal subunit (State L2)Electron microscopy2.481202023-07-12
228IFD|1|1B5S ribosomal RNA5S ribosomal RNAHomo sapiensEukaryaRF00001Dibekacin-added human 80S ribosomeElectron microscopy2.591202024-02-14
239B0H|1|L75S ribosomal RNA5S rRNAHomo sapiensEukaryaRF00001In situ human Hibernating class5 80S ribosomeElectron microscopy2.591202025-03-19
248FLB|1|L45S ribosomal RNA5S rRNAHomo sapiensEukaryaRF00001Human nuclear pre-60S ribosomal subunit (State K2)Electron microscopy2.551202023-07-12
256ZMI|1|L75S ribosomal RNA5S ribosomal RNAHomo sapiensEukaryaRF00001SARS-CoV-2 Nsp1 bound to the human LYAR-80S ribosome complexElectron microscopy2.61202020-08-19
268G5Z|1|L75S ribosomal RNA5S rRNAHomo sapiensEukaryaRF00001mRNA decoding in human is kinetically and structurally distinct from bacteria (GA state)Electron microscopy2.641202023-04-19
278FL6|1|L45S ribosomal RNA5S rRNAHomo sapiensEukaryaRF00001Human nuclear pre-60S ribosomal subunit (State J1)Electron microscopy2.621202023-07-12
289GMO|1|B5S ribosomal RNA5S rRNAHomo sapiensEukaryaRF00001eIF6-bound pre-60S large ribosomal subunit incorporating mutant uL16Electron microscopy2.591182024-10-02
298JDM|1|E5S ribosomal RNA5S ribosomal RNAHomo sapiensEukaryaRF00001Structure of the Human cytoplasmic Ribosome with human tRNA Tyr(GalQ34) and mRNA(UAU) (rotated state)Electron microscopy2.671202023-12-06
308FLA|1|L45S ribosomal RNA5S rRNAHomo sapiensEukaryaRF00001Human nuclear pre-60S ribosomal subunit (State K1)Electron microscopy2.631202023-07-12
318FLD|1|L45S ribosomal RNA5S rRNAHomo sapiensEukaryaRF00001Human nuclear pre-60S ribosomal subunit (State L1)Electron microscopy2.581202023-07-12
326ZM7|1|L75S ribosomal RNA5S ribosomal RNAHomo sapiensEukaryaRF00001SARS-CoV-2 Nsp1 bound to the human CCDC124-80S-EBP1 ribosome complexElectron microscopy2.71202020-07-29
337XNX|1|L25S ribosomal RNA5S rRNAHomo sapiensEukaryaRF00001High resolution cry-EM structure of the human 80S ribosome from SNORD127+/+ Kasumi-1 cellsElectron microscopy2.71202023-04-05
348FL3|1|L45S ribosomal RNA5S rRNAHomo sapiensEukaryaRF00001Human nuclear pre-60S ribosomal subunit (State I2)Electron microscopy2.531172023-07-12
357F5S|1|L75S ribosomal RNA5S rRNAHomo sapiensEukaryaRF00001human delta-METTL18 60S ribosomeElectron microscopy2.721202022-06-22
368FLF|1|L45S ribosomal RNA5S rRNAHomo sapiensEukaryaRF00001Human nuclear pre-60S ribosomal subunit (State L3)Electron microscopy2.651202023-07-12
379B0F|1|L75S ribosomal RNA5S rRNAHomo sapiensEukaryaRF00001In situ human Hibernating class3 80S ribosomeElectron microscopy2.781202025-03-19
388FL9|1|L45S ribosomal RNA5S rRNAHomo sapiensEukaryaRF00001Human nuclear pre-60S ribosomal subunit (State J3)Electron microscopy2.751202023-07-12
398G6J|1|L75S ribosomal RNA5S rRNAHomo sapiensEukaryaRF00001mRNA decoding in human is kinetically and structurally distinct from bacteria (GA state 2)Electron microscopy2.81202023-04-19
406XA1|1|L75S ribosomal RNA5S rRNAHomo sapiensEukaryaRF00001Structure of a drug-like compound stalled human translation termination complexElectron microscopy2.81202020-10-07
418IDT|1|55S ribosomal RNA5S rRNAHomo sapiensEukaryaRF00001human nuclear pre-60S ribosomal particle - State GElectron microscopy2.81202023-08-09
428FLC|1|L45S ribosomal RNA5S rRNAHomo sapiensEukaryaRF00001Human nuclear pre-60S ribosomal subunit (State K3)Electron microscopy2.761202023-07-12
439B0R|1|L75S ribosomal RNA5S rRNAHomo sapiensEukaryaRF00001In situ human hibernating class2 80S ribosomeElectron microscopy2.811202025-03-19
449B0P|1|L75S ribosomal RNA5S rRNA [Homo sapiens]Homo sapiensEukaryaRF00001In situ human Hibernating class1 80S ribosomeElectron microscopy2.821202025-03-19
456Y6X|1|L75S ribosomal RNA5S ribosomal RNAHomo sapiensEukaryaRF00001Tetracenomycin X bound to the human ribosomeElectron microscopy2.81202020-07-08
468RL2|1|L75S ribosomal RNA5S rRNAHomo sapiensEukaryaRF00001Human pre-60S - State 5Electron microscopy2.841202025-01-15
478FL2|1|L45S ribosomal RNA5S rRNAHomo sapiensEukaryaRF00001Human nuclear pre-60S ribosomal subunit (State I1)Electron microscopy2.671172023-07-12
488OJ5|1|75S ribosomal RNA5S rRNAHomo sapiensEukaryaRF0000160S ribosomal subunit bound to the E3-UFM1 complex - state 3 (in-vitro reconstitution)Electron microscopy2.91202024-02-21
496Z6N|1|L75S ribosomal RNA5S rRNAHomo sapiensEukaryaRF00001Cryo-EM structure of human EBP1-80S ribosomes (focus on EBP1)Electron microscopy2.91202020-07-29
506QZP|1|L75S ribosomal RNA5S rRNA (120-MER)Homo sapiensEukaryaRF00001High-resolution cryo-EM structure of the human 80S ribosomeElectron microscopy2.91202019-04-24
518FL0|1|L45S ribosomal RNA5S rRNAHomo sapiensEukaryaRF00001Human nucleolar pre-60S ribosomal subunit (State H)Electron microscopy2.911202023-07-12
528G61|1|L75S ribosomal RNA5S rRNAHomo sapiensEukaryaRF00001mRNA decoding in human is kinetically and structurally distinct from bacteria (AC state)Electron microscopy2.941202023-04-19
538XSY|1|L75S ribosomal RNA5S rRNAHomo sapiensEukaryaRF00001Cryo-EM structure of the human 80S ribosome with Tigecycline, e-tRNA and CCDC124 (40S head Swivelled)Electron microscopy31202024-07-10
546Z6L|1|L75S ribosomal RNA5S rRNAHomo sapiensEukaryaRF00001Cryo-EM structure of human CCDC124 bound to 80S ribosomesElectron microscopy31202020-07-29
556ZME|1|L75S ribosomal RNA5S ribosomal RNAHomo sapiensEukaryaRF00001SARS-CoV-2 Nsp1 bound to the human CCDC124-80S-eERF1 ribosome complexElectron microscopy31202020-08-12
567QVP|1|L75S ribosomal RNA5S ribosomal RNAHomo sapiensEukaryaRF00001Human collided disome (di-ribosome) stalled on XBP1 mRNAElectron microscopy31202022-10-12
577QVP|1|L95S ribosomal RNA5S ribosomal RNAHomo sapiensEukaryaRF00001Human collided disome (di-ribosome) stalled on XBP1 mRNAElectron microscopy31202022-10-12
588IDY|1|55S ribosomal RNA5S rRNAHomo sapiensEukaryaRF00001human nuclear pre-60S ribosomal particle - State FElectron microscopy31202023-08-09
598INF|1|55S ribosomal RNA5S rRNAHomo sapiensEukaryaRF00001human nuclear pre-60S ribosomal particle - State F'Electron microscopy31202023-08-09
608FL4|1|L45S ribosomal RNA5S rRNAHomo sapiensEukaryaRF00001Human nuclear pre-60S ribosomal subunit (State I3)Electron microscopy2.891172023-07-12
616Y2L|1|L75S ribosomal RNA5S ribosomal RNAHomo sapiensEukaryaRF00001Structure of human ribosome in POST stateElectron microscopy31202020-04-15

Release history

Release3.3793.3803.381
Date2025-03-192025-03-262025-04-02

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child

Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.

#SViewPDBTitleMethodResolution#NTs
17F5S|1|L7human delta-METTL18 60S ribosomeELECTRON MICROSCOPY2.72120
28QOI|1|L7Structure of the human 80S ribosome at 1.9 A resolution - the molecular role of chemical modifications and ions in RNAELECTRON MICROSCOPY1.9120
38A3D|1|BHuman mature large subunit of the ribosome with eIF6 and homoharringtonine boundELECTRON MICROSCOPY1.67120
48QYX|1|B2Human 60S ribosomal subunitELECTRON MICROSCOPY1.78119
58XSY|1|L7Cryo-EM structure of the human 80S ribosome with Tigecycline, e-tRNA and CCDC124 (40S head Swivelled)ELECTRON MICROSCOPY3120
68K2C|1|L7Cryo-EM structure of the human 80S ribosome with TigecyclineELECTRON MICROSCOPY2.4120
78YOO|1|L7Cryo-EM structure of the human 80S ribosome with 100 um TigecyclineELECTRON MICROSCOPY2120
88YOP|1|L7Cryo-EM structure of the human 80S ribosome with 4 um TigecyclineELECTRON MICROSCOPY2.2120
98XSX|1|L7Cryo-EM structure of the human 80S ribosome with Tigecycline, E-tRNA, SERBP1 and eEF2ELECTRON MICROSCOPY2.4120
106Y6X|1|L7Tetracenomycin X bound to the human ribosomeELECTRON MICROSCOPY2.8120
119B0F|1|L7In situ human Hibernating class3 80S ribosomeELECTRON MICROSCOPY2.78120
129B0R|1|L7In situ human hibernating class2 80S ribosomeELECTRON MICROSCOPY2.81120
139B0H|1|L7In situ human Hibernating class5 80S ribosomeELECTRON MICROSCOPY2.59120
149B0P|1|L7In situ human Hibernating class1 80S ribosomeELECTRON MICROSCOPY2.82120
159B0G|1|L7In situ human Hibernating class4 80S ribosomeELECTRON MICROSCOPY2.57120
169GMO|1|BeIF6-bound pre-60S large ribosomal subunit incorporating mutant uL16ELECTRON MICROSCOPY2.59118
178G61|1|L7mRNA decoding in human is kinetically and structurally distinct from bacteria (AC state)ELECTRON MICROSCOPY2.94120
188G5Z|1|L7mRNA decoding in human is kinetically and structurally distinct from bacteria (GA state)ELECTRON MICROSCOPY2.64120
198G6J|1|L7mRNA decoding in human is kinetically and structurally distinct from bacteria (GA state 2)ELECTRON MICROSCOPY2.8120
208G60|1|L7mRNA decoding in human is kinetically and structurally distinct from bacteria (CR state)ELECTRON MICROSCOPY2.54120
218G5Y|1|L7mRNA decoding in human is kinetically and structurally distinct from bacteria (IC state)ELECTRON MICROSCOPY2.29120
228GLP|1|L7mRNA decoding in human is kinetically and structurally distinct from bacteria (Consensus LSU focused refined structure)ELECTRON MICROSCOPY1.67120
239C3H|1|L9Structure of the CNOT3-bound human 80S ribosome with tRNA-ARG in the P-site.ELECTRON MICROSCOPY2120
248OJ5|1|760S ribosomal subunit bound to the E3-UFM1 complex - state 3 (in-vitro reconstitution)ELECTRON MICROSCOPY2.9120
257XNX|1|L2High resolution cry-EM structure of the human 80S ribosome from SNORD127+/+ Kasumi-1 cellsELECTRON MICROSCOPY2.7120
267XNY|1|L2High resolution cry-EM structure of the human 80S ribosome from SNORD127+/- Kasumi-1 cellsELECTRON MICROSCOPY2.5120
276ZME|1|L7SARS-CoV-2 Nsp1 bound to the human CCDC124-80S-eERF1 ribosome complexELECTRON MICROSCOPY3120
286ZM7|1|L7SARS-CoV-2 Nsp1 bound to the human CCDC124-80S-EBP1 ribosome complexELECTRON MICROSCOPY2.7120
296ZMI|1|L7SARS-CoV-2 Nsp1 bound to the human LYAR-80S ribosome complexELECTRON MICROSCOPY2.6120
306Z6N|1|L7Cryo-EM structure of human EBP1-80S ribosomes (focus on EBP1)ELECTRON MICROSCOPY2.9120
316Z6L|1|L7Cryo-EM structure of human CCDC124 bound to 80S ribosomesELECTRON MICROSCOPY3120
326XA1|1|L7Structure of a drug-like compound stalled human translation termination complexELECTRON MICROSCOPY2.8120
336QZP|1|L7High-resolution cryo-EM structure of the human 80S ribosomeELECTRON MICROSCOPY2.9120
347OW7|1|BEIF6-bound large subunit of the human ribosomeELECTRON MICROSCOPY2.2120
356Y2L|1|L7Structure of human ribosome in POST stateELECTRON MICROSCOPY3120
367QVP|1|L7Human collided disome (di-ribosome) stalled on XBP1 mRNAELECTRON MICROSCOPY3120
377QVP|1|L9Human collided disome (di-ribosome) stalled on XBP1 mRNAELECTRON MICROSCOPY3120
388IFD|1|1BDibekacin-added human 80S ribosomeELECTRON MICROSCOPY2.59120
398IFE|1|1BArbekacin-added human 80S ribosomeELECTRON MICROSCOPY2.57120
408JDM|1|EStructure of the Human cytoplasmic Ribosome with human tRNA Tyr(GalQ34) and mRNA(UAU) (rotated state)ELECTRON MICROSCOPY2.67120
418JDL|1|EStructure of the Human cytoplasmic Ribosome with human tRNA Tyr(GalQ34) and mRNA(UAU) (non-rotated state)ELECTRON MICROSCOPY2.42120
428JDK|1|EStructure of the Human cytoplasmic Ribosome with human tRNA Asp(ManQ34) and mRNA(GAU)ELECTRON MICROSCOPY2.26120
438JDJ|1|EStructure of the Human cytoplasmic Ribosome with human tRNA Asp(Q34) and mRNA(GAU)ELECTRON MICROSCOPY2.5120
448QFD|1|7UFL1 E3 ligase bound 60S ribosomeELECTRON MICROSCOPY2.2119
458FLD|1|L4Human nuclear pre-60S ribosomal subunit (State L1)ELECTRON MICROSCOPY2.58120
468FLE|1|L4Human nuclear pre-60S ribosomal subunit (State L2)ELECTRON MICROSCOPY2.48120
478FLF|1|L4Human nuclear pre-60S ribosomal subunit (State L3)ELECTRON MICROSCOPY2.65120
488FL9|1|L4Human nuclear pre-60S ribosomal subunit (State J3)ELECTRON MICROSCOPY2.75120
498FL7|1|L4Human nuclear pre-60S ribosomal subunit (State J2)ELECTRON MICROSCOPY2.55120
508FL6|1|L4Human nuclear pre-60S ribosomal subunit (State J1)ELECTRON MICROSCOPY2.62120
518FLC|1|L4Human nuclear pre-60S ribosomal subunit (State K3)ELECTRON MICROSCOPY2.76120
528FLB|1|L4Human nuclear pre-60S ribosomal subunit (State K2)ELECTRON MICROSCOPY2.55120
538FLA|1|L4Human nuclear pre-60S ribosomal subunit (State K1)ELECTRON MICROSCOPY2.63120
548IDT|1|5human nuclear pre-60S ribosomal particle - State GELECTRON MICROSCOPY2.8120
558IDY|1|5human nuclear pre-60S ribosomal particle - State FELECTRON MICROSCOPY3120
568INF|1|5human nuclear pre-60S ribosomal particle - State F'ELECTRON MICROSCOPY3120
578FL4|1|L4Human nuclear pre-60S ribosomal subunit (State I3)ELECTRON MICROSCOPY2.89117
588FL3|1|L4Human nuclear pre-60S ribosomal subunit (State I2)ELECTRON MICROSCOPY2.53117
598FL2|1|L4Human nuclear pre-60S ribosomal subunit (State I1)ELECTRON MICROSCOPY2.67117
608RL2|1|L7Human pre-60S - State 5ELECTRON MICROSCOPY2.84120
618FL0|1|L4Human nucleolar pre-60S ribosomal subunit (State H)ELECTRON MICROSCOPY2.91120

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.


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