RNA 3D Hub //

Equivalence class NR_3.0_56101.9 Current

#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodRes. Å#NTsDate
17Z20|1|v (rep)Transfer RNAPro-tRNAEscherichia coliBacteriaRF0000570S E. coli ribosome with an extended uL23 loop from Candidatus marinimicrobia and a stalled filamin domain 5 nascent chainElectron microscopy2.29772022-08-10
29WNQ|1|ZTransfer RNAA-tRNA(PRO),P-tRNA(PRO), mRNAEscherichia coliBacteriaRF00005Structure of E.coli ribosome in complex with an engineered arrest peptideElectron microscopy2.59772025-10-22
39WNQ|1|YTransfer RNAA-tRNA(PRO),P-tRNA(PRO), mRNAEscherichia coliBacteriaRF00005Structure of E.coli ribosome in complex with an engineered arrest peptideElectron microscopy2.59772025-10-22
49HUS|1|vTransfer RNAP-site tRNAEscherichia coliBacteriaRF00005Structure of WT E.coli ribosome with complexed filament nascent chain at length 31, with P-site tRNAsElectron microscopy2.4772026-01-14
58ZEJ|1|YTransfer RNAmRNA, P-site tRNA (Chain Y), A-site tRNA-PRO (Chain Z)Escherichia coliBacteriaRF00005Structure of E.coli ribosome in complex with an engineered arrest peptideElectron microscopy2.69772025-06-18
69WNR|1|ZTransfer RNAmRNA, P-tRNA(PRO), A-tRNA(PRO)Escherichia coliBacteriaRF00005Structure of E.coli ribosome in complex with an engineered arrest peptide and trigger factorElectron microscopy2.76772025-10-22
79WNR|1|YTransfer RNAmRNA, P-tRNA(PRO), A-tRNA(PRO)Escherichia coliBacteriaRF00005Structure of E.coli ribosome in complex with an engineered arrest peptide and trigger factorElectron microscopy2.76772025-10-22
88ZEJ|1|ZTransfer RNAmRNA, P-site tRNA (Chain Y), A-site tRNA-PRO (Chain Z)Escherichia coliBacteriaRF00005Structure of E.coli ribosome in complex with an engineered arrest peptideElectron microscopy2.69772025-06-18
97ZP8|1|vTransfer RNAPro-tRNAEscherichia coliBacteriaRF0000570S E. coli ribosome with a stalled filamin domain 5 nascent chainElectron microscopy2.2762022-08-10
108ZFI|1|YTransfer RNAmRNA, P-site tRNA (Chain-Y), A-site tRNA-PRO (Chain-Z)Escherichia coliBacteriaRF00005Structure of E.coli ribosome in complex with an engineered arrest peptide and trigger factorElectron microscopy2.9772025-06-18
119HUQ|1|vTransfer RNAPeptidyl Pro-tRNAEscherichia coliBacteriaRF00005Structure of WT E.coli ribosome with complexed filament nascent chain at length 47, with P-site tRNAElectron microscopy2.49772026-01-14
128ZFI|1|ZTransfer RNAmRNA, P-site tRNA (Chain-Y), A-site tRNA-PRO (Chain-Z)Escherichia coliBacteriaRF00005Structure of E.coli ribosome in complex with an engineered arrest peptide and trigger factorElectron microscopy2.9772025-06-18
137ZOD|1|vTransfer RNAPro-tRNAEscherichia coliBacteriaRF0000570S E. coli ribosome with an extended uL23 loop from Candidatus marinimicrobiaElectron microscopy2.56772022-08-10
147O1C|1|B8Transfer RNAmRNA, P-site tRNA-ProEscherichia coli K-12BacteriaRF00005Cryo-EM structure of an Escherichia coli TnaC(R23F)-ribosome-RF2 complex stalled in response to L-tryptophanElectron microscopy2.6772021-09-01
157O1A|1|B8Transfer RNAmRNA, P-site tRNA-ProEscherichia coli K-12BacteriaRF00005Cryo-EM structure of an Escherichia coli TnaC(R23F)-ribosome complex stalled in response to L-tryptophanElectron microscopy2.4772021-09-01
167O19|1|B8Transfer RNAmRNA, P-site tRNA-ProEscherichia coli K-12BacteriaRF00005Cryo-EM structure of an Escherichia coli TnaC-ribosome complex stalled in response to L-tryptophanElectron microscopy2.9772021-09-01

Release history

Release4.22
Date2026-01-14

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child

Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.

#SViewPDBTitleMethodResolution#NTs
17ZOD|1|v70S E. coli ribosome with an extended uL23 loop from Candidatus marinimicrobiaELECTRON MICROSCOPY2.5677
27Z20|1|v70S E. coli ribosome with an extended uL23 loop from Candidatus marinimicrobia and a stalled filamin domain 5 nascent chainELECTRON MICROSCOPY2.2977
37O1A|1|B8Cryo-EM structure of an Escherichia coli TnaC(R23F)-ribosome complex stalled in response to L-tryptophanELECTRON MICROSCOPY2.477
47O1C|1|B8Cryo-EM structure of an Escherichia coli TnaC(R23F)-ribosome-RF2 complex stalled in response to L-tryptophanELECTRON MICROSCOPY2.677
57O19|1|B8Cryo-EM structure of an Escherichia coli TnaC-ribosome complex stalled in response to L-tryptophanELECTRON MICROSCOPY2.977
69WNR|1|YStructure of E.coli ribosome in complex with an engineered arrest peptide and trigger factorELECTRON MICROSCOPY2.7677
78ZFI|1|YStructure of E.coli ribosome in complex with an engineered arrest peptide and trigger factorELECTRON MICROSCOPY2.977
88ZEJ|1|YStructure of E.coli ribosome in complex with an engineered arrest peptideELECTRON MICROSCOPY2.6977
99WNQ|1|YStructure of E.coli ribosome in complex with an engineered arrest peptideELECTRON MICROSCOPY2.5977
109WNQ|1|ZStructure of E.coli ribosome in complex with an engineered arrest peptideELECTRON MICROSCOPY2.5977
118ZEJ|1|ZStructure of E.coli ribosome in complex with an engineered arrest peptideELECTRON MICROSCOPY2.6977
129WNR|1|ZStructure of E.coli ribosome in complex with an engineered arrest peptide and trigger factorELECTRON MICROSCOPY2.7677
138ZFI|1|ZStructure of E.coli ribosome in complex with an engineered arrest peptide and trigger factorELECTRON MICROSCOPY2.977
149HUQ|1|vStructure of WT E.coli ribosome with complexed filament nascent chain at length 47, with P-site tRNAELECTRON MICROSCOPY2.4977
159HUS|1|vStructure of WT E.coli ribosome with complexed filament nascent chain at length 31, with P-site tRNAsELECTRON MICROSCOPY2.477
167ZP8|1|v70S E. coli ribosome with a stalled filamin domain 5 nascent chainELECTRON MICROSCOPY2.276

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.


Coloring options:

Copyright 2026 BGSU RNA group. Page generated in 0.0628 s