#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodRes. Å#NTsDate
15J7L|1|AA (rep)Small subunit ribosomal RNA16S rRNAEscherichia coliBacteriaRF00177Structure of the 70S E coli ribosome with the U1052G mutation in the 16S rRNA bound to tetracyclineX-ray diffraction315342016-07-27
24YBB|1|AASmall subunit ribosomal RNA16S rRNAEscherichia coliBacteriaRF00177High-resolution structure of the Escherichia coli ribosomeX-ray diffraction2.115342015-03-18
34WOI|1|DASmall subunit ribosomal RNA16S ribosomal RNA, Messenger RNAEscherichia coliBacteriaRF001774,5-linked aminoglycoside antibiotics regulate the bacterial ribosome by targeting dynamic conformational processes within intersubunit bridge B2X-ray diffraction315392015-08-05
44WOI|1|AASmall subunit ribosomal RNA16S ribosomal RNA, Messenger RNAEscherichia coliBacteriaRF001774,5-linked aminoglycoside antibiotics regulate the bacterial ribosome by targeting dynamic conformational processes within intersubunit bridge B2X-ray diffraction315382015-08-05
54V9P|1|FASmall subunit ribosomal RNA16S rRNAEscherichia coliBacteriaRF00177Control of ribosomal subunit rotation by elongation factor GX-ray diffraction2.915332014-07-09
64V9O|1|BASmall subunit ribosomal RNA16S rRNAEscherichia coliBacteriaRF00177Control of ribosomal subunit rotation by elongation factor GX-ray diffraction2.915332014-07-09
75J7L|1|BASmall subunit ribosomal RNA16S rRNAEscherichia coliBacteriaRF00177Structure of the 70S E coli ribosome with the U1052G mutation in the 16S rRNA bound to tetracyclineX-ray diffraction315332016-07-27
84V9P|1|HASmall subunit ribosomal RNA16S rRNAEscherichia coliBacteriaRF00177Control of ribosomal subunit rotation by elongation factor GX-ray diffraction2.915332014-07-09
94V9P|1|DASmall subunit ribosomal RNA16S rRNAEscherichia coliBacteriaRF00177Control of ribosomal subunit rotation by elongation factor GX-ray diffraction2.915332014-07-09
104V9P|1|BASmall subunit ribosomal RNA16S rRNAEscherichia coliBacteriaRF00177Control of ribosomal subunit rotation by elongation factor GX-ray diffraction2.915332014-07-09
114V9O|1|FASmall subunit ribosomal RNA16S rRNAEscherichia coliBacteriaRF00177Control of ribosomal subunit rotation by elongation factor GX-ray diffraction2.915332014-07-09
125J91|1|AASmall subunit ribosomal RNA16S rRNAEscherichia coliBacteriaRF00177Structure of the Wild-type 70S E coli ribosome bound to TigecyclineX-ray diffraction2.9615342016-07-06
136I7V|1|AASmall subunit ribosomal RNA16S ribosmal RNAEscherichia coliBacteriaRF00177Ribosomal protein paralogs bL31 and bL36X-ray diffraction2.915332018-12-05
144V9O|1|DASmall subunit ribosomal RNA16S rRNAEscherichia coliBacteriaRF00177Control of ribosomal subunit rotation by elongation factor GX-ray diffraction2.915332014-07-09
154U27|1|AASmall subunit ribosomal RNA16S rRNAEscherichia coliBacteriaRF00177Crystal structure of the E. coli ribosome bound to flopristin and linopristin.X-ray diffraction2.815382014-07-30
164YBB|1|BASmall subunit ribosomal RNA16S rRNAEscherichia coliBacteriaRF00177High-resolution structure of the Escherichia coli ribosomeX-ray diffraction2.115332015-03-18
174U1U|1|AASmall subunit ribosomal RNA16S rRNAEscherichia coliBacteriaRF00177Crystal structure of the E. coli ribosome bound to quinupristin.X-ray diffraction2.9515382014-07-30
184U26|1|AASmall subunit ribosomal RNA16S rRNAEscherichia coliBacteriaRF00177Crystal structure of the E. coli ribosome bound to dalfopristin and quinupristin.X-ray diffraction2.815382014-07-30
194V9D|1|AASmall subunit ribosomal RNA16S rRNA, messenger RNAEscherichia coliBacteriaRF00177Structures of the bacterial ribosome in classical and hybrid states of tRNA bindingX-ray diffraction315382014-07-09
206I7V|1|BASmall subunit ribosomal RNA16S ribosomal RNAEscherichia coliBacteriaRF00177Ribosomal protein paralogs bL31 and bL36X-ray diffraction2.915332018-12-05
214U24|1|AASmall subunit ribosomal RNA16S rRNAEscherichia coliBacteriaRF00177Crystal structure of the E. coli ribosome bound to dalfopristin.X-ray diffraction2.915382014-07-30
224U25|1|AASmall subunit ribosomal RNA16S rRNAEscherichia coliBacteriaRF00177Crystal structure of the E. coli ribosome bound to virginiamycin M1.X-ray diffraction2.915382014-07-30
234V9D|1|BASmall subunit ribosomal RNA16S rRNA, messenger RNAEscherichia coliBacteriaRF00177Structures of the bacterial ribosome in classical and hybrid states of tRNA bindingX-ray diffraction315392014-07-09
244U27|1|CASmall subunit ribosomal RNA16S rRNAEscherichia coliBacteriaRF00177Crystal structure of the E. coli ribosome bound to flopristin and linopristin.X-ray diffraction2.815392014-07-30
254V9O|1|HASmall subunit ribosomal RNA16S rRNAEscherichia coliBacteriaRF00177Control of ribosomal subunit rotation by elongation factor GX-ray diffraction2.915332014-07-09
264U20|1|AASmall subunit ribosomal RNA16S rRNAEscherichia coliBacteriaRF00177Crystal structure of the E. coli ribosome bound to flopristin.X-ray diffraction2.915382014-07-30
274U1U|1|CASmall subunit ribosomal RNA16S rRNAEscherichia coliBacteriaRF00177Crystal structure of the E. coli ribosome bound to quinupristin.X-ray diffraction2.9515392014-07-30
284U1V|1|AASmall subunit ribosomal RNA16S rRNAEscherichia coliBacteriaRF00177Crystal structure of the E. coli ribosome bound to linopristin.X-ray diffraction315382014-07-30
294U25|1|CASmall subunit ribosomal RNA16S rRNAEscherichia coliBacteriaRF00177Crystal structure of the E. coli ribosome bound to virginiamycin M1.X-ray diffraction2.915392014-07-30
304U26|1|CASmall subunit ribosomal RNA16S rRNAEscherichia coliBacteriaRF00177Crystal structure of the E. coli ribosome bound to dalfopristin and quinupristin.X-ray diffraction2.815392014-07-30
315J91|1|BASmall subunit ribosomal RNA16S rRNAEscherichia coliBacteriaRF00177Structure of the Wild-type 70S E coli ribosome bound to TigecyclineX-ray diffraction2.9615332016-07-06
324U24|1|CASmall subunit ribosomal RNA16S rRNAEscherichia coliBacteriaRF00177Crystal structure of the E. coli ribosome bound to dalfopristin.X-ray diffraction2.915392014-07-30
334U1V|1|CASmall subunit ribosomal RNA16S rRNAEscherichia coliBacteriaRF00177Crystal structure of the E. coli ribosome bound to linopristin.X-ray diffraction315392014-07-30
344U20|1|CASmall subunit ribosomal RNA16S rRNAEscherichia coliBacteriaRF00177Crystal structure of the E. coli ribosome bound to flopristin.X-ray diffraction2.915392014-07-30
355J5B|1|AASmall subunit ribosomal RNA16S rRNAEscherichia coliBacteriaRF00177Structure of the WT E coli ribosome bound to tetracyclineX-ray diffraction2.815342016-07-27
365J5B|1|BASmall subunit ribosomal RNA16S rRNAEscherichia coliBacteriaRF00177Structure of the WT E coli ribosome bound to tetracyclineX-ray diffraction2.815332016-07-27
376TC3|1|16S1Small subunit ribosomal RNA16S rRNAEscherichia coliBacteriaRF00177Cryo-EM structure of an Escherichia coli ribosome-SpeFL complex stalled in response to L-ornithine (Replicate 1)Electron microscopy2.715342020-01-01
386TBV|1|16S1Small subunit ribosomal RNA16S rRNAEscherichia coliBacteriaRF00177Cryo-EM structure of an Escherichia coli ribosome-SpeFL complex stalled in response to L-ornithine (Replicate 2)Electron microscopy2.715342020-01-01
396Y69|1|aSmall subunit ribosomal RNA16S ribosomal RNAEscherichia coliBacteriaRF00177Cryo-EM structure of an Escherichia coli 70S ribosome in complex with antibiotic TetracenomycinXElectron microscopy2.8615392020-07-01
405AFI|1|aSmall subunit ribosomal RNA16S ribosomal RNAEscherichia coliBacteriaRF001772.9A Structure of E. coli ribosome-EF-TU complex by cs-corrected cryo-EMElectron microscopy2.915392015-03-11
415NWY|1|0Small subunit ribosomal RNA16S rRNAEscherichia coliBacteriaRF001772.9 A cryo-EM structure of VemP-stalled ribosome-nascent chain complexElectron microscopy2.915392017-07-19
423R8O|1|A16S rRNA, messenger RNAStructures of the bacterial ribosome in classical and hybrid states of tRNA bindingX-ray diffraction315392011-06-01
436WD0|1|3Small subunit ribosomal RNA16S ribosomal RNA, mRNAEscherichia coliBacteriaRF00177Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Cognate Structure I-A)Electron microscopy315392020-07-01
443R8N|1|A16S rRNA, messenger RNAStructures of the bacterial ribosome in classical and hybrid states of tRNA bindingX-ray diffraction315382011-06-01
456WDE|1|3Small subunit ribosomal RNA16S ribosomal RNA, mRNAEscherichia coliBacteriaRF00177Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Cognate Structure V-B)Electron microscopy315392020-07-01
466H4N|1|aSmall subunit ribosomal RNA16S ribosomal RNAEscherichia coliBacteriaRF00177Structure of a hibernating 100S ribosome reveals an inactive conformation of the ribosomal protein S1 - 70S Hibernating E. coli RibosomeElectron microscopy315342018-09-05
476ORE|1|2Small subunit ribosomal RNA16S ribosomal RNAEscherichia coliBacteriaRF00177Release complex 70SElectron microscopy2.915342019-06-19
485WDT|1|aSmall subunit ribosomal RNA16S rRNAEscherichia coliBacteriaRF0017770S ribosome-EF-Tu H84A complex with GppNHpElectron microscopy315402018-04-25
495WFS|1|aSmall subunit ribosomal RNA16S rRNAEscherichia coliBacteriaRF0017770S ribosome-EF-Tu H84A complex with GTP and near-cognate tRNA (Complex C4)Electron microscopy315402018-05-02
505MDV|1|2Small subunit ribosomal RNA16S ribosomal RNAEscherichia coliBacteriaRF00177Structure of ArfA and RF2 bound to the 70S ribosome (accommodated state)Electron microscopy2.9715342016-12-14
515IQR|1|2Small subunit ribosomal RNASSU rRNAEscherichia coliBacteriaRF00177Structure of RelA bound to the 70S ribosomeElectron microscopy315332016-05-04

Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.

#SViewPDBTitleMethodResolution#NTs
14V9P|1|FAControl of ribosomal subunit rotation by elongation factor GX-RAY DIFFRACTION2.91533
24V9P|1|HAControl of ribosomal subunit rotation by elongation factor GX-RAY DIFFRACTION2.91533
34V9O|1|HAControl of ribosomal subunit rotation by elongation factor GX-RAY DIFFRACTION2.91533
44V9P|1|BAControl of ribosomal subunit rotation by elongation factor GX-RAY DIFFRACTION2.91533
54V9O|1|DAControl of ribosomal subunit rotation by elongation factor GX-RAY DIFFRACTION2.91533
64V9P|1|DAControl of ribosomal subunit rotation by elongation factor GX-RAY DIFFRACTION2.91533
76I7V|1|AARibosomal protein paralogs bL31 and bL36X-RAY DIFFRACTION2.91533
84YBB|1|AAHigh-resolution structure of the Escherichia coli ribosomeX-RAY DIFFRACTION2.11534
94U24|1|AACrystal structure of the E. coli ribosome bound to dalfopristin.X-RAY DIFFRACTION2.91538
104U26|1|AACrystal structure of the E. coli ribosome bound to dalfopristin and quinupristin.X-RAY DIFFRACTION2.81538
114U25|1|AACrystal structure of the E. coli ribosome bound to virginiamycin M1.X-RAY DIFFRACTION2.91538
124U27|1|AACrystal structure of the E. coli ribosome bound to flopristin and linopristin.X-RAY DIFFRACTION2.81538
134U1V|1|AACrystal structure of the E. coli ribosome bound to linopristin.X-RAY DIFFRACTION31538
144U20|1|AACrystal structure of the E. coli ribosome bound to flopristin.X-RAY DIFFRACTION2.91538
154U1U|1|AACrystal structure of the E. coli ribosome bound to quinupristin.X-RAY DIFFRACTION2.951538
165J7L|1|AAStructure of the 70S E coli ribosome with the U1052G mutation in the 16S rRNA bound to tetracyclineX-RAY DIFFRACTION31534
175J91|1|AAStructure of the Wild-type 70S E coli ribosome bound to TigecyclineX-RAY DIFFRACTION2.961534
185J5B|1|AAStructure of the WT E coli ribosome bound to tetracyclineX-RAY DIFFRACTION2.81534
195J7L|1|BAStructure of the 70S E coli ribosome with the U1052G mutation in the 16S rRNA bound to tetracyclineX-RAY DIFFRACTION31533
205J5B|1|BAStructure of the WT E coli ribosome bound to tetracyclineX-RAY DIFFRACTION2.81533
215J91|1|BAStructure of the Wild-type 70S E coli ribosome bound to TigecyclineX-RAY DIFFRACTION2.961533
224YBB|1|BAHigh-resolution structure of the Escherichia coli ribosomeX-RAY DIFFRACTION2.11533
236I7V|1|BARibosomal protein paralogs bL31 and bL36X-RAY DIFFRACTION2.91533
244U24|1|CACrystal structure of the E. coli ribosome bound to dalfopristin.X-RAY DIFFRACTION2.91539
254U26|1|CACrystal structure of the E. coli ribosome bound to dalfopristin and quinupristin.X-RAY DIFFRACTION2.81539
264U25|1|CACrystal structure of the E. coli ribosome bound to virginiamycin M1.X-RAY DIFFRACTION2.91539
274U27|1|CACrystal structure of the E. coli ribosome bound to flopristin and linopristin.X-RAY DIFFRACTION2.81539
284U1V|1|CACrystal structure of the E. coli ribosome bound to linopristin.X-RAY DIFFRACTION31539
294U20|1|CACrystal structure of the E. coli ribosome bound to flopristin.X-RAY DIFFRACTION2.91539
304U1U|1|CACrystal structure of the E. coli ribosome bound to quinupristin.X-RAY DIFFRACTION2.951539
314V9O|1|FAControl of ribosomal subunit rotation by elongation factor GX-RAY DIFFRACTION2.91533
324V9O|1|BAControl of ribosomal subunit rotation by elongation factor GX-RAY DIFFRACTION2.91533
334V9D|1|AAStructures of the bacterial ribosome in classical and hybrid states of tRNA bindingX-RAY DIFFRACTION31538
343R8N|1|AStructures of the bacterial ribosome in classical and hybrid states of tRNA bindingX-RAY DIFFRACTION31538
356TC3|1|16S1Cryo-EM structure of an Escherichia coli ribosome-SpeFL complex stalled in response to L-ornithine (Replicate 1)ELECTRON MICROSCOPY2.71534
366TBV|1|16S1Cryo-EM structure of an Escherichia coli ribosome-SpeFL complex stalled in response to L-ornithine (Replicate 2)ELECTRON MICROSCOPY2.71534
376Y69|1|aCryo-EM structure of an Escherichia coli 70S ribosome in complex with antibiotic TetracenomycinXELECTRON MICROSCOPY2.861539
386H4N|1|aStructure of a hibernating 100S ribosome reveals an inactive conformation of the ribosomal protein S1 - 70S Hibernating E. coli RibosomeELECTRON MICROSCOPY31534
396WD0|1|3Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Cognate Structure I-A)ELECTRON MICROSCOPY31539
405NWY|1|02.9 A cryo-EM structure of VemP-stalled ribosome-nascent chain complexELECTRON MICROSCOPY2.91539
416ORE|1|2Release complex 70SELECTRON MICROSCOPY2.91534
425MDV|1|2Structure of ArfA and RF2 bound to the 70S ribosome (accommodated state)ELECTRON MICROSCOPY2.971534
435IQR|1|2Structure of RelA bound to the 70S ribosomeELECTRON MICROSCOPY31533
444V9D|1|BAStructures of the bacterial ribosome in classical and hybrid states of tRNA bindingX-RAY DIFFRACTION31539
453R8O|1|AStructures of the bacterial ribosome in classical and hybrid states of tRNA bindingX-RAY DIFFRACTION31539
464WOI|1|DA4,5-linked aminoglycoside antibiotics regulate the bacterial ribosome by targeting dynamic conformational processes within intersubunit bridge B2X-RAY DIFFRACTION31539
476WDE|1|3Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Cognate Structure V-B)ELECTRON MICROSCOPY31539
485AFI|1|a2.9A Structure of E. coli ribosome-EF-TU complex by cs-corrected cryo-EMELECTRON MICROSCOPY2.91539
495WDT|1|a70S ribosome-EF-Tu H84A complex with GppNHpELECTRON MICROSCOPY31540
505WFS|1|a70S ribosome-EF-Tu H84A complex with GTP and near-cognate tRNA (Complex C4)ELECTRON MICROSCOPY31540
514WOI|1|AA4,5-linked aminoglycoside antibiotics regulate the bacterial ribosome by targeting dynamic conformational processes within intersubunit bridge B2X-RAY DIFFRACTION31538

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.


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