RNA 3D Hub //

Equivalence class NR_3.0_58155.2 Current

#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodRes. Å#NTsDate
18CRE|1|1+ 8CRE|1|4 (rep)Large subunit ribosomal RNA + 5.8S ribosomal RNA25S, 5.8SCandida albicansEukaryaRF02543 + RF00002Crystal structure of the Candida albicans 80S ribosome in complex with geneticin G418X-ray diffraction333732024-09-18
28OI5|1|1+ 8OI5|1|4Large subunit ribosomal RNA + 5.8S ribosomal RNA25S, 5.8SCandida albicansEukaryaRF02543 + RF00002Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (2mM)X-ray diffraction2.933272024-10-09
38CRE|1|AS+ 8CRE|1|AULarge subunit ribosomal RNA + 5.8S ribosomal RNA25S, 5.8SCandida albicansEukaryaRF02543 + RF00002Crystal structure of the Candida albicans 80S ribosome in complex with geneticin G418X-ray diffraction333872024-09-18
48OI5|1|AS+ 8OI5|1|AULarge subunit ribosomal RNA + 5.8S ribosomal RNA25S, 5.8SCandida albicansEukaryaRF02543 + RF00002Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (2mM)X-ray diffraction2.932212024-10-09
58C3A|1|1+ 8C3A|1|4Large subunit ribosomal RNA + 5.8S ribosomal RNA25S, 5.8SCandida albicansEukaryaRF02543 + RF00002Crystal structure of ailanthone bound to the Candida albicans 80S ribosomeX-ray diffraction333742024-01-10
68C3A|1|AS+ 8C3A|1|AULarge subunit ribosomal RNA + 5.8S ribosomal RNA25S, 5.8SCandida albicansEukaryaRF02543 + RF00002Crystal structure of ailanthone bound to the Candida albicans 80S ribosomeX-ray diffraction333872024-01-10
77PZY|1|1+ 7PZY|1|4Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNACandida albicans SC5314EukaryaRF02543 + RF00002Structure of the vacant Candida albicans 80S ribosomeElectron microscopy2.3233672022-05-18
89G6J|1|1+ 9G6J|1|4Large subunit ribosomal RNA + 5.8S ribosomal RNA25S rRNA, 5.8S rRNACandida albicans SC5314EukaryaRF02543 + RF00002The structure of the Candida albicans ribosome with tRNA-fMet, mRNA, and compounds (GEN and MFQ) with strong density for the P-site tRNAElectron microscopy2.1532222025-04-23
99G30|1|1+ 9G30|1|4Large subunit ribosomal RNA + 5.8S ribosomal RNA25S rRNA, 5.8S rRNACandida albicansEukaryaRF02543 + RF00002The structure of the Candida albicans ribosome with tRNA-fMet, mRNA, and compounds (GEN and MFQ) shows strong density for the A site tRNAElectron microscopy2.3532222025-04-23
107Q08|1|1+ 7Q08|1|4Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNACandida albicans SC5314EukaryaRF02543 + RF00002Structure of Candida albicans 80S ribosome in complex with cycloheximideElectron microscopy2.5633672022-05-25
118Q5I|1|1+ 8Q5I|1|4Large subunit ribosomal RNA + 5.8S ribosomal RNA25S rRNA, 5.8S rRNACandida albicansEukaryaRF02543 + RF00002Structure of Candida albicans 80S ribosome in complex with cephaelineElectron microscopy2.4532312023-09-13
127Q0F|1|1+ 7Q0F|1|4Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNACandida albicans SC5314EukaryaRF02543 + RF00002Structure of Candida albicans 80S ribosome in complex with phyllanthosideElectron microscopy2.6433672022-05-18
137Q0R|1|1+ 7Q0R|1|4Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNACandida albicans SC5314EukaryaRF02543 + RF00002Structure of the Candida albicans 80S ribosome in complex with blasticidin sElectron microscopy2.6733672022-05-25
147Q0P|1|1+ 7Q0P|1|4Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNACandida albicans SC5314EukaryaRF02543 + RF00002Structure of the Candida albicans 80S ribosome in complex with anisomycinElectron microscopy2.7733672022-05-18

Release history

Release3.384
Date2025-04-23

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child

Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.

#SViewPDBTitleMethodResolution#NTs
19G30|1|1+ 9G30|1|4The structure of the Candida albicans ribosome with tRNA-fMet, mRNA, and compounds (GEN and MFQ) shows strong density for the A site tRNAELECTRON MICROSCOPY2.353222
29G6J|1|1+ 9G6J|1|4The structure of the Candida albicans ribosome with tRNA-fMet, mRNA, and compounds (GEN and MFQ) with strong density for the P-site tRNAELECTRON MICROSCOPY2.153222
37Q08|1|1+ 7Q08|1|4Structure of Candida albicans 80S ribosome in complex with cycloheximideELECTRON MICROSCOPY2.563367
47Q0F|1|1+ 7Q0F|1|4Structure of Candida albicans 80S ribosome in complex with phyllanthosideELECTRON MICROSCOPY2.643367
57Q0P|1|1+ 7Q0P|1|4Structure of the Candida albicans 80S ribosome in complex with anisomycinELECTRON MICROSCOPY2.773367
67Q0R|1|1+ 7Q0R|1|4Structure of the Candida albicans 80S ribosome in complex with blasticidin sELECTRON MICROSCOPY2.673367
77PZY|1|1+ 7PZY|1|4Structure of the vacant Candida albicans 80S ribosomeELECTRON MICROSCOPY2.323367
88Q5I|1|1+ 8Q5I|1|4Structure of Candida albicans 80S ribosome in complex with cephaelineELECTRON MICROSCOPY2.453231
98CRE|1|AS+ 8CRE|1|AUCrystal structure of the Candida albicans 80S ribosome in complex with geneticin G418X-RAY DIFFRACTION33387
108C3A|1|AS+ 8C3A|1|AUCrystal structure of ailanthone bound to the Candida albicans 80S ribosomeX-RAY DIFFRACTION33387
118OI5|1|AS+ 8OI5|1|AUCrystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (2mM)X-RAY DIFFRACTION2.93221
128CRE|1|1+ 8CRE|1|4Crystal structure of the Candida albicans 80S ribosome in complex with geneticin G418X-RAY DIFFRACTION33373
138C3A|1|1+ 8C3A|1|4Crystal structure of ailanthone bound to the Candida albicans 80S ribosomeX-RAY DIFFRACTION33374
148OI5|1|1+ 8OI5|1|4Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (2mM)X-RAY DIFFRACTION2.93327

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.


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