RNA 3D Hub //

Equivalence class NR_3.0_60049.5 Obsolete

Showing 1 to 8 of 8 entries
#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodRes. Å#NTsDate
13CD6|1|4 (rep)RNA (5'-R(*CP*CP*(PPU))-3')Co-cystal of large Ribosomal Subunit mutant G2616A with CC-PuromycinX-ray diffraction2.7532008-05-20
23CMA|1|5RNA (5'-R(*CP*CP*A)-3')The structure of CCA and CCA-Phe-Cap-Bio bound to the large ribosomal subunit of Haloarcula marismortuiX-ray diffraction2.832008-09-23
31VQO|1|45'-R(*CP*CP*(PPU))-3'The structure of CCPMN bound to the large ribosomal subunit haloarcula marismortuiX-ray diffraction2.232005-11-29
41QVG|1|3Oligonucleotide CCAStructure of CCA oligonucleotide bound to the tRNA binding sites of the large ribosomal subunit of Haloarcula marismortuiX-ray diffraction2.932003-11-11
53CME|1|5RNA (5'-R(*C*CP*A)-3')synthetic constructThe Structure of CA and CCA-PHE-CAP-BIO Bound to the Large Ribosomal Subunit of Haloarcula MarismortuiX-ray diffraction2.9522008-09-23
67Y38|1|ZRNA (5'-R(P*CP*CP*A)-3')in vitro transcription vector pT7-TP(deltai)Molecular architecture of the chikungunya virus replication complexElectron microscopy2.832022-12-14
78OIT|1|B7E-site tRNAHomo sapiens39S human mitochondrial large ribosomal subunit with mtRF1 and P-site tRNAElectron microscopy2.932023-06-14
88IP8|1|dlCCA end of E-tRNATriticum aestivumWheat 80S ribosome stalled on AUG-Stop boron dependentlyElectron microscopy2.932024-02-21

Release history

Release3.3233.3243.3253.3263.3273.3283.3293.3303.3313.3323.3333.3343.3353.3363.3373.3383.3393.3403.3413.3423.3433.3443.3453.3463.3473.3483.3493.3503.3513.3523.3533.3543.3553.3563.3573.3583.3593.3603.3613.3623.3633.3643.3653.3663.3673.3683.3693.3703.3713.3723.3733.3743.3753.3763.377
Date2024-02-212024-02-282024-03-062024-03-132024-03-202024-03-272024-04-032024-04-102024-04-172024-04-242024-05-012024-05-082024-05-152024-05-222024-05-292024-06-052024-06-122024-06-192024-06-262024-07-032024-07-102024-07-172024-07-252024-07-312024-08-072024-08-142024-08-212024-08-282024-09-042024-09-112024-09-182024-09-252024-10-022024-10-092024-10-162024-10-232024-10-302024-11-062024-11-132024-11-202024-11-272024-12-042024-12-112024-12-182024-12-252025-01-012025-01-082025-01-152025-01-222025-01-292025-02-052025-02-122025-02-192025-02-262025-03-05

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child

Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.

Showing 1 to 8 of 8 entries
#SViewPDBTitleMethodResolution#NTs
11VQO|1|4The structure of CCPMN bound to the large ribosomal subunit haloarcula marismortuiX-RAY DIFFRACTION2.23
23CD6|1|4Co-cystal of large Ribosomal Subunit mutant G2616A with CC-PuromycinX-RAY DIFFRACTION2.753
33CMA|1|5The structure of CCA and CCA-Phe-Cap-Bio bound to the large ribosomal subunit of Haloarcula marismortuiX-RAY DIFFRACTION2.83
43CME|1|5The Structure of CA and CCA-PHE-CAP-BIO Bound to the Large Ribosomal Subunit of Haloarcula MarismortuiX-RAY DIFFRACTION2.952
51QVG|1|3Structure of CCA oligonucleotide bound to the tRNA binding sites of the large ribosomal subunit of Haloarcula marismortuiX-RAY DIFFRACTION2.93
68IP8|1|dlWheat 80S ribosome stalled on AUG-Stop boron dependentlyELECTRON MICROSCOPY2.93
78OIT|1|B739S human mitochondrial large ribosomal subunit with mtRF1 and P-site tRNAELECTRON MICROSCOPY2.93
87Y38|1|ZMolecular architecture of the chikungunya virus replication complexELECTRON MICROSCOPY2.83

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.

1VQO|1|4:1VQO|1|4 = 01VQO|1|4:3CD6|1|4 = 0.20131VQO|1|4:3CMA|1|5 = 0.20581VQO|1|4:3CME|1|5 = 1.52631VQO|1|4:1QVG|1|3 = 3.35371VQO|1|4:8IP8|1|dl not available1VQO|1|4:8OIT|1|B7 not available1VQO|1|4:7Y38|1|Z not available3CD6|1|4:1VQO|1|4 = 0.20133CD6|1|4:3CD6|1|4 = 03CD6|1|4:3CMA|1|5 = 0.13843CD6|1|4:3CME|1|5 = 1.54023CD6|1|4:1QVG|1|3 = 2.95323CD6|1|4:8IP8|1|dl not available3CD6|1|4:8OIT|1|B7 not available3CD6|1|4:7Y38|1|Z not available3CMA|1|5:1VQO|1|4 = 0.20583CMA|1|5:3CD6|1|4 = 0.13843CMA|1|5:3CMA|1|5 = 03CMA|1|5:3CME|1|5 = 1.58353CMA|1|5:1QVG|1|3 = 2.90533CMA|1|5:8IP8|1|dl = 3.14353CMA|1|5:8OIT|1|B7 = 2.17173CMA|1|5:7Y38|1|Z = 2.18503CME|1|5:1VQO|1|4 = 1.52633CME|1|5:3CD6|1|4 = 1.54023CME|1|5:3CMA|1|5 = 1.58353CME|1|5:3CME|1|5 = 03CME|1|5:1QVG|1|3 = 3.07243CME|1|5:8IP8|1|dl not available3CME|1|5:8OIT|1|B7 not available3CME|1|5:7Y38|1|Z not available1QVG|1|3:1VQO|1|4 = 3.35371QVG|1|3:3CD6|1|4 = 2.95321QVG|1|3:3CMA|1|5 = 2.90531QVG|1|3:3CME|1|5 = 3.07241QVG|1|3:1QVG|1|3 = 01QVG|1|3:8IP8|1|dl = 0.48721QVG|1|3:8OIT|1|B7 = 1.68151QVG|1|3:7Y38|1|Z = 2.45438IP8|1|dl:1VQO|1|4 not available8IP8|1|dl:3CD6|1|4 not available8IP8|1|dl:3CMA|1|5 = 3.14358IP8|1|dl:3CME|1|5 not available8IP8|1|dl:1QVG|1|3 = 0.48728IP8|1|dl:8IP8|1|dl = 08IP8|1|dl:8OIT|1|B7 = 1.67048IP8|1|dl:7Y38|1|Z = 2.57268OIT|1|B7:1VQO|1|4 not available8OIT|1|B7:3CD6|1|4 not available8OIT|1|B7:3CMA|1|5 = 2.17178OIT|1|B7:3CME|1|5 not available8OIT|1|B7:1QVG|1|3 = 1.68158OIT|1|B7:8IP8|1|dl = 1.67048OIT|1|B7:8OIT|1|B7 = 08OIT|1|B7:7Y38|1|Z = 2.15047Y38|1|Z:1VQO|1|4 not available7Y38|1|Z:3CD6|1|4 not available7Y38|1|Z:3CMA|1|5 = 2.18507Y38|1|Z:3CME|1|5 not available7Y38|1|Z:1QVG|1|3 = 2.45437Y38|1|Z:8IP8|1|dl = 2.57267Y38|1|Z:8OIT|1|B7 = 2.15047Y38|1|Z:7Y38|1|Z = 01VQO|1|43CD6|1|43CMA|1|53CME|1|51QVG|1|38IP8|1|dl8OIT|1|B77Y38|1|ZDiscrepancy0.000.501.001.502.002.503.00

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