Equivalence class NR_3.0_65061.14 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | #NTs | Date |
|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 6ZMI|1|L5+ 6ZMI|1|L8 (rep) | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 28S ribosomal RNA, 5.8S ribosomal RNA | Homo sapiens | Eukarya | RF02543 + RF00002 | SARS-CoV-2 Nsp1 bound to the human LYAR-80S ribosome complex | Electron microscopy | 2.6 | 3929 | 2020-08-19 |
| 2 | 7OW7|1|A+ 7OW7|1|C | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 28S rRNA, 5.8S ribosomal RNA | Homo sapiens | Eukarya | RF02543 + RF00002 | EIF6-bound large subunit of the human ribosome | Electron microscopy | 2.2 | 3451 | 2022-10-05 |
| 3 | 6ZM7|1|L5+ 6ZM7|1|L8 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 28S ribosomal RNA, 5.8S ribosomal RNA | Homo sapiens | Eukarya | RF02543 + RF00002 | SARS-CoV-2 Nsp1 bound to the human CCDC124-80S-EBP1 ribosome complex | Electron microscopy | 2.7 | 3929 | 2020-07-29 |
| 4 | 7F5S|1|L5+ 7F5S|1|L8 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 28S rRNA, 5.8S rRNA | Homo sapiens | Eukarya | RF02543 + RF00002 | human delta-METTL18 60S ribosome | Electron microscopy | 2.72 | 3871 | 2022-06-22 |
| 5 | 6Y6X|1|L5+ 6Y6X|1|L8 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 28S ribosomal RNA, 5.8S ribosomal RNA | Homo sapiens | Eukarya | RF02543 + RF00002 | Tetracenomycin X bound to the human ribosome | Electron microscopy | 2.8 | 3929 | 2020-07-08 |
| 6 | 6Z6N|1|L5+ 6Z6N|1|L8 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 28S rRNA, 5.8S rRNA | Homo sapiens | Eukarya | RF02543 + RF00002 | Cryo-EM structure of human EBP1-80S ribosomes (focus on EBP1) | Electron microscopy | 2.9 | 3928 | 2020-07-29 |
| 7 | 6QZP|1|L5+ 6QZP|1|L8 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 28S rRNA (3773-MER), 5.8S rRNA (156-MER) | Homo sapiens | Eukarya | RF02543 + RF00002 | High-resolution cryo-EM structure of the human 80S ribosome | Electron microscopy | 2.9 | 3929 | 2019-04-24 |
| 8 | 6ZME|1|L5+ 6ZME|1|L8 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 28S ribosomal RNA, 5.8S ribosomal RNA | Homo sapiens | Eukarya | RF02543 + RF00002 | SARS-CoV-2 Nsp1 bound to the human CCDC124-80S-eERF1 ribosome complex | Electron microscopy | 3 | 3929 | 2020-08-12 |
| 9 | 6Z6L|1|L5+ 6Z6L|1|L8 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 28S rRNA, 5.8S rRNA | Homo sapiens | Eukarya | RF02543 + RF00002 | Cryo-EM structure of human CCDC124 bound to 80S ribosomes | Electron microscopy | 3 | 3928 | 2020-07-29 |
| 10 | 6XA1|1|L5+ 6XA1|1|L8 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 28S rRNA, 5.8S rRNA | Homo sapiens | Eukarya | RF02543 + RF00002 | Structure of a drug-like compound stalled human translation termination complex | Electron microscopy | 2.8 | 3665 | 2020-10-07 |
| 11 | 6Y2L|1|L5+ 6Y2L|1|L8 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 28S ribosomal RNA, 5.8S ribosomal RNA | Homo sapiens | Eukarya | RF02543 + RF00002 | Structure of human ribosome in POST state | Electron microscopy | 3 | 3769 | 2020-04-15 |
Release history
| Release | 3.251 |
|---|---|
| Date | 2022-10-05 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|---|---|---|---|---|
| NR_3.0_65061.14 | NR_3.0_65061.13 | 3.251 | (10) 6QZP|1|L5+6QZP|1|L8, 6XA1|1|L5+6XA1|1|L8, 6Y2L|1|L5+6Y2L|1|L8, 6Y6X|1|L5+6Y6X|1|L8, 6Z6L|1|L5+6Z6L|1|L8, 6Z6N|1|L5+6Z6N|1|L8, 6ZM7|1|L5+6ZM7|1|L8, 6ZME|1|L5+6ZME|1|L8, 6ZMI|1|L5+6ZMI|1|L8, 7F5S|1|L5+7F5S|1|L8 | (1) 7OW7|1|A+7OW7|1|C | (0) |
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|---|---|---|---|---|
| NR_3.0_65061.14 | NR_3.0_65061.15 | 3.252 | (11) 6QZP|1|L5+6QZP|1|L8, 6XA1|1|L5+6XA1|1|L8, 6Y2L|1|L5+6Y2L|1|L8, 6Y6X|1|L5+6Y6X|1|L8, 6Z6L|1|L5+6Z6L|1|L8, 6Z6N|1|L5+6Z6N|1|L8, 6ZM7|1|L5+6ZM7|1|L8, 6ZME|1|L5+6ZME|1|L8, 6ZMI|1|L5+6ZMI|1|L8, 7F5S|1|L5+7F5S|1|L8, 7OW7|1|A+7OW7|1|C | (0) | (2) 7QVP|1|L5+7QVP|1|L8, 7QVP|1|L6+7QVP|1|L1 |
Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.
| #S | View | PDB | Title | Method | Resolution | #NTs |
|---|---|---|---|---|---|---|
| 1 | 7F5S|1|L5+ 7F5S|1|L8 | human delta-METTL18 60S ribosome | ELECTRON MICROSCOPY | 2.72 | 3871 | |
| 2 | 6QZP|1|L5+ 6QZP|1|L8 | High-resolution cryo-EM structure of the human 80S ribosome | ELECTRON MICROSCOPY | 2.9 | 3929 | |
| 3 | 6Y2L|1|L5+ 6Y2L|1|L8 | Structure of human ribosome in POST state | ELECTRON MICROSCOPY | 3 | 3769 | |
| 4 | 6ZME|1|L5+ 6ZME|1|L8 | SARS-CoV-2 Nsp1 bound to the human CCDC124-80S-eERF1 ribosome complex | ELECTRON MICROSCOPY | 3 | 3929 | |
| 5 | 6ZMI|1|L5+ 6ZMI|1|L8 | SARS-CoV-2 Nsp1 bound to the human LYAR-80S ribosome complex | ELECTRON MICROSCOPY | 2.6 | 3929 | |
| 6 | 6ZM7|1|L5+ 6ZM7|1|L8 | SARS-CoV-2 Nsp1 bound to the human CCDC124-80S-EBP1 ribosome complex | ELECTRON MICROSCOPY | 2.7 | 3929 | |
| 7 | 6Z6L|1|L5+ 6Z6L|1|L8 | Cryo-EM structure of human CCDC124 bound to 80S ribosomes | ELECTRON MICROSCOPY | 3 | 3928 | |
| 8 | 6Z6N|1|L5+ 6Z6N|1|L8 | Cryo-EM structure of human EBP1-80S ribosomes (focus on EBP1) | ELECTRON MICROSCOPY | 2.9 | 3928 | |
| 9 | 6Y6X|1|L5+ 6Y6X|1|L8 | Tetracenomycin X bound to the human ribosome | ELECTRON MICROSCOPY | 2.8 | 3929 | |
| 10 | 6XA1|1|L5+ 6XA1|1|L8 | Structure of a drug-like compound stalled human translation termination complex | ELECTRON MICROSCOPY | 2.8 | 3665 | |
| 11 | 7OW7|1|A+ 7OW7|1|C | EIF6-bound large subunit of the human ribosome | ELECTRON MICROSCOPY | 2.2 | 3451 |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.
Coloring options: