NR_3.0_65061.29

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#	IFE	Standardized name	Molecule	Organism	Source	Rfam	Title	Method	Res. Å	#NTs	Date
1	8GLP\|1\|L5+ 8GLP\|1\|L8 (rep)	Large subunit ribosomal RNA + 5.8S ribosomal RNA	28S rRNA, 5.8S rRNA	Homo sapiens	Eukarya	RF02543 + RF00002	mRNA decoding in human is kinetically and structurally distinct from bacteria (Consensus LSU focused refined structure)	Electron microscopy	1.67	3702	2023-04-19
2	8QOI\|1\|L5+ 8QOI\|1\|L8	Large subunit ribosomal RNA + 5.8S ribosomal RNA	28S rRNA (3773-MER), 5.8S rRNA (156-MER)	Homo sapiens	Eukarya	RF02543 + RF00002	Structure of the human 80S ribosome at 1.9 A resolution - the molecular role of chemical modifications and ions in RNA	Electron microscopy	1.9	3929	2024-06-12
3	8YOO\|1\|L5+ 8YOO\|1\|L8	Large subunit ribosomal RNA + 5.8S ribosomal RNA	28S rRNA, 5.8S rRNA	Homo sapiens	Eukarya	RF02543 + RF00002	Cryo-EM structure of the human 80S ribosome with 100 um Tigecycline	Electron microscopy	2	3826	2024-07-10
4	8A3D\|1\|A+ 8A3D\|1\|C	Large subunit ribosomal RNA + 5.8S ribosomal RNA	28S ribosomal RNA, 5.8S ribosomal RNA	Homo sapiens	Eukarya	RF02543 + RF00002	Human mature large subunit of the ribosome with eIF6 and homoharringtonine bound	Electron microscopy	1.67	3451	2023-03-08
5	8YOP\|1\|L5+ 8YOP\|1\|L8	Large subunit ribosomal RNA + 5.8S ribosomal RNA	28S rRNA, 5.8S rRNA	Homo sapiens	Eukarya	RF02543 + RF00002	Cryo-EM structure of the human 80S ribosome with 4 um Tigecycline	Electron microscopy	2.2	3927	2024-07-10
6	8XSX\|1\|L5+ 8XSX\|1\|L8	Large subunit ribosomal RNA + 5.8S ribosomal RNA	28S rRNA, 5.8S rRNA	Homo sapiens	Eukarya	RF02543 + RF00002	Cryo-EM structure of the human 80S ribosome with Tigecycline, E-tRNA, SERBP1 and eEF2	Electron microscopy	2.4	3927	2024-07-10
7	8K2C\|1\|L5+ 8K2C\|1\|L8	Large subunit ribosomal RNA + 5.8S ribosomal RNA	28S rRNA, 5.8S rRNA	Homo sapiens	Eukarya	RF02543 + RF00002	Cryo-EM structure of the human 80S ribosome with Tigecycline	Electron microscopy	2.4	3927	2024-07-10
8	8G5Y\|1\|L5+ 8G5Y\|1\|L8	Large subunit ribosomal RNA + 5.8S ribosomal RNA	28S rRNA, 5.8S rRNA	Homo sapiens	Eukarya	RF02543 + RF00002	mRNA decoding in human is kinetically and structurally distinct from bacteria (IC state)	Electron microscopy	2.29	3877	2023-04-19
9	8JDK\|1\|D	Large subunit ribosomal RNA	28S ribosomal RNA	Homo sapiens	Eukarya	RF02543	Structure of the Human cytoplasmic Ribosome with human tRNA Asp(ManQ34) and mRNA(GAU)	Electron microscopy	2.26	3399	2023-12-06
10	7XNY\|1\|L1+ 7XNY\|1\|L3	Large subunit ribosomal RNA + 5.8S ribosomal RNA	28S rRNA, 5.8S rRNA	Homo sapiens	Eukarya	RF02543 + RF00002	High resolution cry-EM structure of the human 80S ribosome from SNORD127+/- Kasumi-1 cells	Electron microscopy	2.5	3929	2023-04-05
11	6ZMI\|1\|L5+ 6ZMI\|1\|L8	Large subunit ribosomal RNA + 5.8S ribosomal RNA	28S ribosomal RNA, 5.8S ribosomal RNA	Homo sapiens	Eukarya	RF02543 + RF00002	SARS-CoV-2 Nsp1 bound to the human LYAR-80S ribosome complex	Electron microscopy	2.6	3929	2020-08-19
12	8IFE\|1\|1A+ 8IFE\|1\|1C	Large subunit ribosomal RNA + 5.8S ribosomal RNA	28S ribosomal RNA, 5.8S ribosomal RNA	Homo sapiens	Eukarya	RF02543 + RF00002	Arbekacin-added human 80S ribosome	Electron microscopy	2.57	3873	2024-02-14
13	8IFD\|1\|1A+ 8IFD\|1\|1C	Large subunit ribosomal RNA + 5.8S ribosomal RNA	28S ribosomal RNA, 5.8S ribosomal RNA	Homo sapiens	Eukarya	RF02543 + RF00002	Dibekacin-added human 80S ribosome	Electron microscopy	2.59	3873	2024-02-14
14	7OW7\|1\|A+ 7OW7\|1\|C	Large subunit ribosomal RNA + 5.8S ribosomal RNA	28S rRNA, 5.8S ribosomal RNA	Homo sapiens	Eukarya	RF02543 + RF00002	EIF6-bound large subunit of the human ribosome	Electron microscopy	2.2	3451	2022-10-05
15	8QFD\|1\|5+ 8QFD\|1\|8	Large subunit ribosomal RNA + 5.8S ribosomal RNA	28S rRNA, 5.8S rRNA	Homo sapiens	Eukarya	RF02543 + RF00002	UFL1 E3 ligase bound 60S ribosome	Electron microscopy	2.2	3274	2024-02-21
16	8JDL\|1\|D	Large subunit ribosomal RNA	28S ribosomal RNA	Homo sapiens	Eukarya	RF02543	Structure of the Human cytoplasmic Ribosome with human tRNA Tyr(GalQ34) and mRNA(UAU) (non-rotated state)	Electron microscopy	2.42	3399	2023-12-06
17	6ZM7\|1\|L5+ 6ZM7\|1\|L8	Large subunit ribosomal RNA + 5.8S ribosomal RNA	28S ribosomal RNA, 5.8S ribosomal RNA	Homo sapiens	Eukarya	RF02543 + RF00002	SARS-CoV-2 Nsp1 bound to the human CCDC124-80S-EBP1 ribosome complex	Electron microscopy	2.7	3929	2020-07-29
18	8G60\|1\|L5+ 8G60\|1\|L8	Large subunit ribosomal RNA + 5.8S ribosomal RNA	28S rRNA, 5.8S rRNA	Homo sapiens	Eukarya	RF02543 + RF00002	mRNA decoding in human is kinetically and structurally distinct from bacteria (CR state)	Electron microscopy	2.54	3793	2023-04-19
19	7XNX\|1\|L1+ 7XNX\|1\|L3	Large subunit ribosomal RNA + 5.8S ribosomal RNA	28S rRNA, 5.8S rRNA	Homo sapiens	Eukarya	RF02543 + RF00002	High resolution cry-EM structure of the human 80S ribosome from SNORD127+/+ Kasumi-1 cells	Electron microscopy	2.7	3929	2023-04-05
20	8JDJ\|1\|D	Large subunit ribosomal RNA	28S ribosomal RNA	Homo sapiens	Eukarya	RF02543	Structure of the Human cytoplasmic Ribosome with human tRNA Asp(Q34) and mRNA(GAU)	Electron microscopy	2.5	3399	2023-12-06
21	8G5Z\|1\|L5+ 8G5Z\|1\|L8	Large subunit ribosomal RNA + 5.8S ribosomal RNA	28S rRNA, 5.8S rRNA	Homo sapiens	Eukarya	RF02543 + RF00002	mRNA decoding in human is kinetically and structurally distinct from bacteria (GA state)	Electron microscopy	2.64	3843	2023-04-19
22	7F5S\|1\|L5+ 7F5S\|1\|L8	Large subunit ribosomal RNA + 5.8S ribosomal RNA	28S rRNA, 5.8S rRNA	Homo sapiens	Eukarya	RF02543 + RF00002	human delta-METTL18 60S ribosome	Electron microscopy	2.72	3871	2022-06-22
23	8FL3\|1\|L3+ 8FL3\|1\|L1	Large subunit ribosomal RNA + 5.8S ribosomal RNA	28S rRNA, 5.8S rRNA	Homo sapiens	Eukarya	RF02543 + RF00002	Human nuclear pre-60S ribosomal subunit (State I2)	Electron microscopy	2.53	3648	2023-07-12
24	6Y6X\|1\|L5+ 6Y6X\|1\|L8	Large subunit ribosomal RNA + 5.8S ribosomal RNA	28S ribosomal RNA, 5.8S ribosomal RNA	Homo sapiens	Eukarya	RF02543 + RF00002	Tetracenomycin X bound to the human ribosome	Electron microscopy	2.8	3929	2020-07-08
25	6Z6N\|1\|L5+ 6Z6N\|1\|L8	Large subunit ribosomal RNA + 5.8S ribosomal RNA	28S rRNA, 5.8S rRNA	Homo sapiens	Eukarya	RF02543 + RF00002	Cryo-EM structure of human EBP1-80S ribosomes (focus on EBP1)	Electron microscopy	2.9	3928	2020-07-29
26	8FLE\|1\|L3+ 8FLE\|1\|L1	Large subunit ribosomal RNA + 5.8S ribosomal RNA	28S rRNA, 5.8S rRNA	Homo sapiens	Eukarya	RF02543 + RF00002	Human nuclear pre-60S ribosomal subunit (State L2)	Electron microscopy	2.48	3526	2023-07-12
27	8FLB\|1\|L3+ 8FLB\|1\|L1	Large subunit ribosomal RNA + 5.8S ribosomal RNA	28S rRNA, 5.8S rRNA	Homo sapiens	Eukarya	RF02543 + RF00002	Human nuclear pre-60S ribosomal subunit (State K2)	Electron microscopy	2.55	3574	2023-07-12
28	8JDM\|1\|D	Large subunit ribosomal RNA	28S ribosomal RNA	Homo sapiens	Eukarya	RF02543	Structure of the Human cytoplasmic Ribosome with human tRNA Tyr(GalQ34) and mRNA(UAU) (rotated state)	Electron microscopy	2.67	3399	2023-12-06
29	8FL7\|1\|L3+ 8FL7\|1\|L1	Large subunit ribosomal RNA + 5.8S ribosomal RNA	28S rRNA, 5.8S rRNA	Homo sapiens	Eukarya	RF02543 + RF00002	Human nuclear pre-60S ribosomal subunit (State J2)	Electron microscopy	2.55	3563	2023-07-12
30	8G6J\|1\|L5+ 8G6J\|1\|L8	Large subunit ribosomal RNA + 5.8S ribosomal RNA	28S rRNA, 5.8S rRNA	Homo sapiens	Eukarya	RF02543 + RF00002	mRNA decoding in human is kinetically and structurally distinct from bacteria (GA state 2)	Electron microscopy	2.8	3843	2023-04-19
31	6QZP\|1\|L5+ 6QZP\|1\|L8	Large subunit ribosomal RNA + 5.8S ribosomal RNA	28S rRNA (3773-MER), 5.8S rRNA (156-MER)	Homo sapiens	Eukarya	RF02543 + RF00002	High-resolution cryo-EM structure of the human 80S ribosome	Electron microscopy	2.9	3929	2019-04-24
32	6ZME\|1\|L5+ 6ZME\|1\|L8	Large subunit ribosomal RNA + 5.8S ribosomal RNA	28S ribosomal RNA, 5.8S ribosomal RNA	Homo sapiens	Eukarya	RF02543 + RF00002	SARS-CoV-2 Nsp1 bound to the human CCDC124-80S-eERF1 ribosome complex	Electron microscopy	3	3929	2020-08-12
33	6Z6L\|1\|L5+ 6Z6L\|1\|L8	Large subunit ribosomal RNA + 5.8S ribosomal RNA	28S rRNA, 5.8S rRNA	Homo sapiens	Eukarya	RF02543 + RF00002	Cryo-EM structure of human CCDC124 bound to 80S ribosomes	Electron microscopy	3	3928	2020-07-29
34	8XSY\|1\|L5+ 8XSY\|1\|L8	Large subunit ribosomal RNA + 5.8S ribosomal RNA	28S rRNA, 5.8S rRNA	Homo sapiens	Eukarya	RF02543 + RF00002	Cryo-EM structure of the human 80S ribosome with Tigecycline, e-tRNA and CCDC124 (40S head Swivelled)	Electron microscopy	3	3927	2024-07-10
35	7QVP\|1\|L5+ 7QVP\|1\|L8	Large subunit ribosomal RNA + 5.8S ribosomal RNA	28S ribosomal RNA, 5.8S ribosomal RNA	Homo sapiens	Eukarya	RF02543 + RF00002	Human collided disome (di-ribosome) stalled on XBP1 mRNA	Electron microscopy	3	3767	2022-10-12
36	8FLD\|1\|L3+ 8FLD\|1\|L1	Large subunit ribosomal RNA + 5.8S ribosomal RNA	28S rRNA, 5.8S rRNA	Homo sapiens	Eukarya	RF02543 + RF00002	Human nuclear pre-60S ribosomal subunit (State L1)	Electron microscopy	2.58	3526	2023-07-12
37	8FL6\|1\|L3+ 8FL6\|1\|L1	Large subunit ribosomal RNA + 5.8S ribosomal RNA	28S rRNA, 5.8S rRNA	Homo sapiens	Eukarya	RF02543 + RF00002	Human nuclear pre-60S ribosomal subunit (State J1)	Electron microscopy	2.62	3559	2023-07-12
38	8FLA\|1\|L3+ 8FLA\|1\|L1	Large subunit ribosomal RNA + 5.8S ribosomal RNA	28S rRNA, 5.8S rRNA	Homo sapiens	Eukarya	RF02543 + RF00002	Human nuclear pre-60S ribosomal subunit (State K1)	Electron microscopy	2.63	3574	2023-07-12
39	8FL2\|1\|L3+ 8FL2\|1\|L1	Large subunit ribosomal RNA + 5.8S ribosomal RNA	28S rRNA, 5.8S rRNA	Homo sapiens	Eukarya	RF02543 + RF00002	Human nuclear pre-60S ribosomal subunit (State I1)	Electron microscopy	2.67	3649	2023-07-12
40	7QVP\|1\|L6+ 7QVP\|1\|L1	Large subunit ribosomal RNA + 5.8S ribosomal RNA	28S ribosomal RNA, 5.8S ribosomal RNA	Homo sapiens	Eukarya	RF02543 + RF00002	Human collided disome (di-ribosome) stalled on XBP1 mRNA	Electron microscopy	3	3728	2022-10-12
41	8IDT\|1\|2+ 8IDT\|1\|8	Large subunit ribosomal RNA + 5.8S ribosomal RNA	28S rRNA, 5.8S rRNA	Homo sapiens	Eukarya	RF02543 + RF00002	human nuclear pre-60S ribosomal particle - State G	Electron microscopy	2.8	3680	2023-08-09
42	6XA1\|1\|L5+ 6XA1\|1\|L8	Large subunit ribosomal RNA + 5.8S ribosomal RNA	28S rRNA, 5.8S rRNA	Homo sapiens	Eukarya	RF02543 + RF00002	Structure of a drug-like compound stalled human translation termination complex	Electron microscopy	2.8	3665	2020-10-07
43	8FLF\|1\|L3+ 8FLF\|1\|L1	Large subunit ribosomal RNA + 5.8S ribosomal RNA	28S rRNA, 5.8S rRNA	Homo sapiens	Eukarya	RF02543 + RF00002	Human nuclear pre-60S ribosomal subunit (State L3)	Electron microscopy	2.65	3479	2023-07-12
44	8G61\|1\|L5+ 8G61\|1\|L8	Large subunit ribosomal RNA + 5.8S ribosomal RNA	28S rRNA, 5.8S rRNA	Homo sapiens	Eukarya	RF02543 + RF00002	mRNA decoding in human is kinetically and structurally distinct from bacteria (AC state)	Electron microscopy	2.94	3813	2023-04-19
45	8OJ5\|1\|5+ 8OJ5\|1\|8	Large subunit ribosomal RNA + 5.8S ribosomal RNA	28S rRNA, 5.8S rRNA	Homo sapiens	Eukarya	RF02543 + RF00002	60S ribosomal subunit bound to the E3-UFM1 complex - state 3 (in-vitro reconstitution)	Electron microscopy	2.9	3622	2024-02-21
46	8INF\|1\|2+ 8INF\|1\|8	Large subunit ribosomal RNA + 5.8S ribosomal RNA	28S rRNA, 5.8S rRNA	Homo sapiens	Eukarya	RF02543 + RF00002	human nuclear pre-60S ribosomal particle - State F'	Electron microscopy	3	3808	2023-08-09
47	8IDY\|1\|2+ 8IDY\|1\|8	Large subunit ribosomal RNA + 5.8S ribosomal RNA	28S rRNA, 5.8S rRNA	Homo sapiens	Eukarya	RF02543 + RF00002	human nuclear pre-60S ribosomal particle - State F	Electron microscopy	3	3797	2023-08-09
48	8FL9\|1\|L3+ 8FL9\|1\|L1	Large subunit ribosomal RNA + 5.8S ribosomal RNA	28S rRNA, 5.8S rRNA	Homo sapiens	Eukarya	RF02543 + RF00002	Human nuclear pre-60S ribosomal subunit (State J3)	Electron microscopy	2.75	3515	2023-07-12
49	8FLC\|1\|L3+ 8FLC\|1\|L1	Large subunit ribosomal RNA + 5.8S ribosomal RNA	28S rRNA, 5.8S rRNA	Homo sapiens	Eukarya	RF02543 + RF00002	Human nuclear pre-60S ribosomal subunit (State K3)	Electron microscopy	2.76	3527	2023-07-12
50	6Y2L\|1\|L5+ 6Y2L\|1\|L8	Large subunit ribosomal RNA + 5.8S ribosomal RNA	28S ribosomal RNA, 5.8S ribosomal RNA	Homo sapiens	Eukarya	RF02543 + RF00002	Structure of human ribosome in POST state	Electron microscopy	3	3769	2020-04-15
51	8FL4\|1\|L3+ 8FL4\|1\|L1	Large subunit ribosomal RNA + 5.8S ribosomal RNA	28S rRNA, 5.8S rRNA	Homo sapiens	Eukarya	RF02543 + RF00002	Human nuclear pre-60S ribosomal subunit (State I3)	Electron microscopy	2.89	3640	2023-07-12
52	8FKY\|1\|L3+ 8FKY\|1\|L1	Large subunit ribosomal RNA + 5.8S ribosomal RNA	28S rRNA, 5.8S rRNA	Homo sapiens	Eukarya	RF02543 + RF00002	Human nucleolar pre-60S ribosomal subunit (State F)	Electron microscopy	2.67	2740	2023-07-12
53	8FKW\|1\|L3+ 8FKW\|1\|L1	Large subunit ribosomal RNA + 5.8S ribosomal RNA	28S rRNA, 5.8S rRNA	Homo sapiens	Eukarya	RF02543 + RF00002	Human nucleolar pre-60S ribosomal subunit (State D2)	Electron microscopy	2.5	2429	2023-07-12
54	8FKV\|1\|L3+ 8FKV\|1\|L1	Large subunit ribosomal RNA + 5.8S ribosomal RNA	28S rRNA, 5.8S rRNA	Homo sapiens	Eukarya	RF02543 + RF00002	Human nucleolar pre-60S ribosomal subunit (State D1)	Electron microscopy	2.47	2365	2023-07-12
55	8FKX\|1\|L3+ 8FKX\|1\|L1	Large subunit ribosomal RNA + 5.8S ribosomal RNA	28S rRNA, 5.8S rRNA	Homo sapiens	Eukarya	RF02543 + RF00002	Human nucleolar pre-60S ribosomal subunit (State E)	Electron microscopy	2.59	2402	2023-07-12
56	8FKU\|1\|L3+ 8FKU\|1\|L1	Large subunit ribosomal RNA + 5.8S ribosomal RNA	28S rRNA, 5.8S rRNA	Homo sapiens	Eukarya	RF02543 + RF00002	Human nucleolar pre-60S ribosomal subunit (State C2)	Electron microscopy	2.82	2337	2023-07-12
57	8FKT\|1\|L3+ 8FKT\|1\|L1	Large subunit ribosomal RNA + 5.8S ribosomal RNA	28S rRNA, 5.8S rRNA	Homo sapiens	Eukarya	RF02543 + RF00002	Human nucleolar pre-60S ribosomal subunit (State C1)	Electron microscopy	2.81	2277	2023-07-12
58	8FKS\|1\|L3+ 8FKS\|1\|L1	Large subunit ribosomal RNA + 5.8S ribosomal RNA	28S rRNA, 5.8S rRNA	Homo sapiens	Eukarya	RF02543 + RF00002	Human nucleolar pre-60S ribosomal subunit (State B2)	Electron microscopy	2.88	1976	2023-07-12
59	8FKR\|1\|L3+ 8FKR\|1\|L1	Large subunit ribosomal RNA + 5.8S ribosomal RNA	28S rRNA, 5.8S rRNA	Homo sapiens	Eukarya	RF02543 + RF00002	Human nucleolar pre-60S ribosomal subunit (State B1)	Electron microscopy	2.89	1921	2023-07-12
60	8FKQ\|1\|L3+ 8FKQ\|1\|L1	Large subunit ribosomal RNA + 5.8S ribosomal RNA	28S rRNA, 5.8S rRNA	Homo sapiens	Eukarya	RF02543 + RF00002	Human nucleolar pre-60S ribosomal subunit (State A2)	Electron microscopy	2.76	1715	2023-07-12
61	8FKP\|1\|L3+ 8FKP\|1\|L1	Large subunit ribosomal RNA + 5.8S ribosomal RNA	28S rRNA, 5.8S rRNA	Homo sapiens	Eukarya	RF02543 + RF00002	Human nucleolar pre-60S ribosomal subunit (State A1)	Electron microscopy	2.85	1659	2023-07-12
62	8FL0\|1\|L3	Large subunit ribosomal RNA	28S rRNA	Homo sapiens	Eukarya	RF02543	Human nucleolar pre-60S ribosomal subunit (State H)	Electron microscopy	2.91	1558	2023-07-12
63	8ONY\|1\|5	Large subunit ribosomal RNA	28S rRNA	Homo sapiens	Eukarya	RF02543	Human Methionine Aminopeptidase 2 at the 80S ribosome	Electron microscopy	2.92	156	2024-02-21

Release history

Release	3.343	3.344	3.345	3.346	3.347	3.348	3.349	3.350	3.351	3.352	3.353	3.354
Date	2024-07-10	2024-07-17	2024-07-25	2024-07-31	2024-08-07	2024-08-14	2024-08-21	2024-08-28	2024-09-04	2024-09-11	2024-09-18	2024-09-25

Parents

This class	Parent classes	Release id	Intersection	Added to this class	Only in parent

Children

This class	Descendant classes	Release id	Intersection	Only in this class	Added to child

Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.

#S	PDB	Title	Method	Resolution	#NTs
1	8OJ5\|1\|5+ 8OJ5\|1\|8	60S ribosomal subunit bound to the E3-UFM1 complex - state 3 (in-vitro reconstitution)	ELECTRON MICROSCOPY	2.9	3622
2	8QFD\|1\|5+ 8QFD\|1\|8	UFL1 E3 ligase bound 60S ribosome	ELECTRON MICROSCOPY	2.2	3274
3	8JDM\|1\|D	Structure of the Human cytoplasmic Ribosome with human tRNA Tyr(GalQ34) and mRNA(UAU) (rotated state)	ELECTRON MICROSCOPY	2.67	3399
4	8JDL\|1\|D	Structure of the Human cytoplasmic Ribosome with human tRNA Tyr(GalQ34) and mRNA(UAU) (non-rotated state)	ELECTRON MICROSCOPY	2.42	3399
5	8JDJ\|1\|D	Structure of the Human cytoplasmic Ribosome with human tRNA Asp(Q34) and mRNA(GAU)	ELECTRON MICROSCOPY	2.5	3399
6	8JDK\|1\|D	Structure of the Human cytoplasmic Ribosome with human tRNA Asp(ManQ34) and mRNA(GAU)	ELECTRON MICROSCOPY	2.26	3399
7	8IFD\|1\|1A+ 8IFD\|1\|1C	Dibekacin-added human 80S ribosome	ELECTRON MICROSCOPY	2.59	3873
8	8IFE\|1\|1A+ 8IFE\|1\|1C	Arbekacin-added human 80S ribosome	ELECTRON MICROSCOPY	2.57	3873
9	6XA1\|1\|L5+ 6XA1\|1\|L8	Structure of a drug-like compound stalled human translation termination complex	ELECTRON MICROSCOPY	2.8	3665
10	8QOI\|1\|L5+ 8QOI\|1\|L8	Structure of the human 80S ribosome at 1.9 A resolution - the molecular role of chemical modifications and ions in RNA	ELECTRON MICROSCOPY	1.9	3929
11	7F5S\|1\|L5+ 7F5S\|1\|L8	human delta-METTL18 60S ribosome	ELECTRON MICROSCOPY	2.72	3871
12	6Y6X\|1\|L5+ 6Y6X\|1\|L8	Tetracenomycin X bound to the human ribosome	ELECTRON MICROSCOPY	2.8	3929
13	6Z6N\|1\|L5+ 6Z6N\|1\|L8	Cryo-EM structure of human EBP1-80S ribosomes (focus on EBP1)	ELECTRON MICROSCOPY	2.9	3928
14	6Z6L\|1\|L5+ 6Z6L\|1\|L8	Cryo-EM structure of human CCDC124 bound to 80S ribosomes	ELECTRON MICROSCOPY	3	3928
15	6ZM7\|1\|L5+ 6ZM7\|1\|L8	SARS-CoV-2 Nsp1 bound to the human CCDC124-80S-EBP1 ribosome complex	ELECTRON MICROSCOPY	2.7	3929
16	6ZMI\|1\|L5+ 6ZMI\|1\|L8	SARS-CoV-2 Nsp1 bound to the human LYAR-80S ribosome complex	ELECTRON MICROSCOPY	2.6	3929
17	6ZME\|1\|L5+ 6ZME\|1\|L8	SARS-CoV-2 Nsp1 bound to the human CCDC124-80S-eERF1 ribosome complex	ELECTRON MICROSCOPY	3	3929
18	7XNY\|1\|L1+ 7XNY\|1\|L3	High resolution cry-EM structure of the human 80S ribosome from SNORD127+/- Kasumi-1 cells	ELECTRON MICROSCOPY	2.5	3929
19	7XNX\|1\|L1+ 7XNX\|1\|L3	High resolution cry-EM structure of the human 80S ribosome from SNORD127+/+ Kasumi-1 cells	ELECTRON MICROSCOPY	2.7	3929
20	6QZP\|1\|L5+ 6QZP\|1\|L8	High-resolution cryo-EM structure of the human 80S ribosome	ELECTRON MICROSCOPY	2.9	3929
21	6Y2L\|1\|L5+ 6Y2L\|1\|L8	Structure of human ribosome in POST state	ELECTRON MICROSCOPY	3	3769
22	7QVP\|1\|L5+ 7QVP\|1\|L8	Human collided disome (di-ribosome) stalled on XBP1 mRNA	ELECTRON MICROSCOPY	3	3767
23	7QVP\|1\|L6+ 7QVP\|1\|L1	Human collided disome (di-ribosome) stalled on XBP1 mRNA	ELECTRON MICROSCOPY	3	3728
24	8YOO\|1\|L5+ 8YOO\|1\|L8	Cryo-EM structure of the human 80S ribosome with 100 um Tigecycline	ELECTRON MICROSCOPY	2	3826
25	8YOP\|1\|L5+ 8YOP\|1\|L8	Cryo-EM structure of the human 80S ribosome with 4 um Tigecycline	ELECTRON MICROSCOPY	2.2	3927
26	8XSY\|1\|L5+ 8XSY\|1\|L8	Cryo-EM structure of the human 80S ribosome with Tigecycline, e-tRNA and CCDC124 (40S head Swivelled)	ELECTRON MICROSCOPY	3	3927
27	8K2C\|1\|L5+ 8K2C\|1\|L8	Cryo-EM structure of the human 80S ribosome with Tigecycline	ELECTRON MICROSCOPY	2.4	3927
28	8XSX\|1\|L5+ 8XSX\|1\|L8	Cryo-EM structure of the human 80S ribosome with Tigecycline, E-tRNA, SERBP1 and eEF2	ELECTRON MICROSCOPY	2.4	3927
29	8G60\|1\|L5+ 8G60\|1\|L8	mRNA decoding in human is kinetically and structurally distinct from bacteria (CR state)	ELECTRON MICROSCOPY	2.54	3793
30	8A3D\|1\|A+ 8A3D\|1\|C	Human mature large subunit of the ribosome with eIF6 and homoharringtonine bound	ELECTRON MICROSCOPY	1.67	3451
31	7OW7\|1\|A+ 7OW7\|1\|C	EIF6-bound large subunit of the human ribosome	ELECTRON MICROSCOPY	2.2	3451
32	8G6J\|1\|L5+ 8G6J\|1\|L8	mRNA decoding in human is kinetically and structurally distinct from bacteria (GA state 2)	ELECTRON MICROSCOPY	2.8	3843
33	8G5Z\|1\|L5+ 8G5Z\|1\|L8	mRNA decoding in human is kinetically and structurally distinct from bacteria (GA state)	ELECTRON MICROSCOPY	2.64	3843
34	8GLP\|1\|L5+ 8GLP\|1\|L8	mRNA decoding in human is kinetically and structurally distinct from bacteria (Consensus LSU focused refined structure)	ELECTRON MICROSCOPY	1.67	3702
35	8G5Y\|1\|L5+ 8G5Y\|1\|L8	mRNA decoding in human is kinetically and structurally distinct from bacteria (IC state)	ELECTRON MICROSCOPY	2.29	3877
36	8G61\|1\|L5+ 8G61\|1\|L8	mRNA decoding in human is kinetically and structurally distinct from bacteria (AC state)	ELECTRON MICROSCOPY	2.94	3813
37	8FLF\|1\|L3+ 8FLF\|1\|L1	Human nuclear pre-60S ribosomal subunit (State L3)	ELECTRON MICROSCOPY	2.65	3479
38	8FLE\|1\|L3+ 8FLE\|1\|L1	Human nuclear pre-60S ribosomal subunit (State L2)	ELECTRON MICROSCOPY	2.48	3526
39	8FLD\|1\|L3+ 8FLD\|1\|L1	Human nuclear pre-60S ribosomal subunit (State L1)	ELECTRON MICROSCOPY	2.58	3526
40	8FL7\|1\|L3+ 8FL7\|1\|L1	Human nuclear pre-60S ribosomal subunit (State J2)	ELECTRON MICROSCOPY	2.55	3563
41	8FL6\|1\|L3+ 8FL6\|1\|L1	Human nuclear pre-60S ribosomal subunit (State J1)	ELECTRON MICROSCOPY	2.62	3559
42	8FLA\|1\|L3+ 8FLA\|1\|L1	Human nuclear pre-60S ribosomal subunit (State K1)	ELECTRON MICROSCOPY	2.63	3574
43	8FLB\|1\|L3+ 8FLB\|1\|L1	Human nuclear pre-60S ribosomal subunit (State K2)	ELECTRON MICROSCOPY	2.55	3574
44	8FLC\|1\|L3+ 8FLC\|1\|L1	Human nuclear pre-60S ribosomal subunit (State K3)	ELECTRON MICROSCOPY	2.76	3527
45	8FL9\|1\|L3+ 8FL9\|1\|L1	Human nuclear pre-60S ribosomal subunit (State J3)	ELECTRON MICROSCOPY	2.75	3515
46	8INF\|1\|2+ 8INF\|1\|8	human nuclear pre-60S ribosomal particle - State F'	ELECTRON MICROSCOPY	3	3808
47	8IDY\|1\|2+ 8IDY\|1\|8	human nuclear pre-60S ribosomal particle - State F	ELECTRON MICROSCOPY	3	3797
48	8IDT\|1\|2+ 8IDT\|1\|8	human nuclear pre-60S ribosomal particle - State G	ELECTRON MICROSCOPY	2.8	3680
49	8FL4\|1\|L3+ 8FL4\|1\|L1	Human nuclear pre-60S ribosomal subunit (State I3)	ELECTRON MICROSCOPY	2.89	3640
50	8FL3\|1\|L3+ 8FL3\|1\|L1	Human nuclear pre-60S ribosomal subunit (State I2)	ELECTRON MICROSCOPY	2.53	3648
51	8FL2\|1\|L3+ 8FL2\|1\|L1	Human nuclear pre-60S ribosomal subunit (State I1)	ELECTRON MICROSCOPY	2.67	3649
52	8FL0\|1\|L3	Human nucleolar pre-60S ribosomal subunit (State H)	ELECTRON MICROSCOPY	2.91	1558
53	8FKY\|1\|L3+ 8FKY\|1\|L1	Human nucleolar pre-60S ribosomal subunit (State F)	ELECTRON MICROSCOPY	2.67	2740
54	8FKX\|1\|L3+ 8FKX\|1\|L1	Human nucleolar pre-60S ribosomal subunit (State E)	ELECTRON MICROSCOPY	2.59	2402
55	8FKU\|1\|L3+ 8FKU\|1\|L1	Human nucleolar pre-60S ribosomal subunit (State C2)	ELECTRON MICROSCOPY	2.82	2337
56	8FKW\|1\|L3+ 8FKW\|1\|L1	Human nucleolar pre-60S ribosomal subunit (State D2)	ELECTRON MICROSCOPY	2.5	2429
57	8FKV\|1\|L3+ 8FKV\|1\|L1	Human nucleolar pre-60S ribosomal subunit (State D1)	ELECTRON MICROSCOPY	2.47	2365
58	8FKT\|1\|L3+ 8FKT\|1\|L1	Human nucleolar pre-60S ribosomal subunit (State C1)	ELECTRON MICROSCOPY	2.81	2277
59	8FKR\|1\|L3+ 8FKR\|1\|L1	Human nucleolar pre-60S ribosomal subunit (State B1)	ELECTRON MICROSCOPY	2.89	1921
60	8FKP\|1\|L3+ 8FKP\|1\|L1	Human nucleolar pre-60S ribosomal subunit (State A1)	ELECTRON MICROSCOPY	2.85	1659
61	8FKS\|1\|L3+ 8FKS\|1\|L1	Human nucleolar pre-60S ribosomal subunit (State B2)	ELECTRON MICROSCOPY	2.88	1976
62	8FKQ\|1\|L3+ 8FKQ\|1\|L1	Human nucleolar pre-60S ribosomal subunit (State A2)	ELECTRON MICROSCOPY	2.76	1715
63	8ONY\|1\|5	Human Methionine Aminopeptidase 2 at the 80S ribosome	ELECTRON MICROSCOPY	2.92	156

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.

Coloring options: Nucleotide numbers

Equivalence class NR_3.0_65061.29 Obsolete

Release history

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