RNA 3D Hub //

Equivalence class NR_3.0_67193.4 Obsolete

Showing 1 to 4 of 4 entries
#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodRes. Å#NTsDate
18OM4|1|r (rep)Small subunit ribosomal RNA15S mitochondrial rRNASaccharomyces cerevisiaeMitochondriaRF00177Small subunit of yeast mitochondrial ribosome.Electron microscopy2.3214872024-01-10
28D8L|1|aSmall subunit ribosomal RNA15S ribosomal RNASaccharomyces cerevisiaeMitochondriaRF00177Yeast mitochondrial small subunit assembly intermediate (State 3)Electron microscopy2.615062022-12-14
38OM2|1|rSmall subunit ribosomal RNA15S mitochondrial rRNASaccharomyces cerevisiaeMitochondriaRF00177Small subunit of yeast mitochondrial ribosome in complex with METTL17/Rsm22.Electron microscopy2.5714862024-01-10
48OM3|1|rSmall subunit ribosomal RNA15S mitochondrial rRNASaccharomyces cerevisiaeMitochondriaRF00177Small subunit of yeast mitochondrial ribosome in complex with IF3/Aim23.Electron microscopy2.8714872024-01-10

Release history

Release3.3173.3183.3193.3203.3213.3223.3233.3243.3253.3263.3273.3283.3293.3303.3313.3323.3333.3343.3353.3363.3373.3383.3393.3403.3413.3423.3433.3443.3453.3463.3473.3483.3493.3503.3513.3523.3533.3543.3553.3563.3573.3583.3593.3603.3613.3623.3633.3643.3653.3663.3673.3683.3693.3703.3713.3723.3733.3743.3753.3763.377
Date2024-01-102024-01-172024-01-242024-01-312024-02-072024-02-142024-02-212024-02-282024-03-062024-03-132024-03-202024-03-272024-04-032024-04-102024-04-172024-04-242024-05-012024-05-082024-05-152024-05-222024-05-292024-06-052024-06-122024-06-192024-06-262024-07-032024-07-102024-07-172024-07-252024-07-312024-08-072024-08-142024-08-212024-08-282024-09-042024-09-112024-09-182024-09-252024-10-022024-10-092024-10-162024-10-232024-10-302024-11-062024-11-132024-11-202024-11-272024-12-042024-12-112024-12-182024-12-252025-01-012025-01-082025-01-152025-01-222025-01-292025-02-052025-02-122025-02-192025-02-262025-03-05

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child

Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.

Showing 1 to 4 of 4 entries
#SViewPDBTitleMethodResolution#NTs
18D8L|1|aYeast mitochondrial small subunit assembly intermediate (State 3)ELECTRON MICROSCOPY2.61506
28OM2|1|rSmall subunit of yeast mitochondrial ribosome in complex with METTL17/Rsm22.ELECTRON MICROSCOPY2.571486
38OM4|1|rSmall subunit of yeast mitochondrial ribosome.ELECTRON MICROSCOPY2.321487
48OM3|1|rSmall subunit of yeast mitochondrial ribosome in complex with IF3/Aim23.ELECTRON MICROSCOPY2.871487

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.

8D8L|1|a:8D8L|1|a = 08D8L|1|a:8OM2|1|r = 0.03648D8L|1|a:8OM4|1|r = 0.05088D8L|1|a:8OM3|1|r = 0.08558OM2|1|r:8D8L|1|a = 0.03648OM2|1|r:8OM2|1|r = 08OM2|1|r:8OM4|1|r = 0.04108OM2|1|r:8OM3|1|r = 0.08868OM4|1|r:8D8L|1|a = 0.05088OM4|1|r:8OM2|1|r = 0.04108OM4|1|r:8OM4|1|r = 08OM4|1|r:8OM3|1|r = 0.06018OM3|1|r:8D8L|1|a = 0.08558OM3|1|r:8OM2|1|r = 0.08868OM3|1|r:8OM4|1|r = 0.06018OM3|1|r:8OM3|1|r = 08D8L|1|a8OM2|1|r8OM4|1|r8OM3|1|rDiscrepancy0.000.020.040.060.08

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