RNA 3D Hub //

Equivalence class NR_3.0_71228.8 Obsolete

Showing 1 to 12 of 12 entries
#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodRes. Å#NTsDate
18C3A|1|1 (rep)Large subunit ribosomal RNA25SCandida albicansEukaryaRF02543Crystal structure of ailanthone bound to the Candida albicans 80S ribosomeX-ray diffraction332172024-01-10
28C3A|1|ASLarge subunit ribosomal RNA25SCandida albicansEukaryaRF02543Crystal structure of ailanthone bound to the Candida albicans 80S ribosomeX-ray diffraction332292024-01-10
38OI5|1|1Large subunit ribosomal RNA25SCandida albicansEukaryaRF02543Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (2mM)X-ray diffraction2.931712024-10-09
48OI5|1|ASLarge subunit ribosomal RNA25SCandida albicansEukaryaRF02543Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (2mM)X-ray diffraction2.930652024-10-09
58CRE|1|AS+ 8CRE|1|AULarge subunit ribosomal RNA + 5.8S ribosomal RNA25S, 5.8SCandida albicansEukaryaRF02543 + RF00002Crystal structure of the Candida albicans 80S ribosome in complex with geneticin G418X-ray diffraction333872024-09-18
68CRE|1|1+ 8CRE|1|4Large subunit ribosomal RNA + 5.8S ribosomal RNA25S, 5.8SCandida albicansEukaryaRF02543 + RF00002Crystal structure of the Candida albicans 80S ribosome in complex with geneticin G418X-ray diffraction333732024-09-18
77PZY|1|1+ 7PZY|1|4Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNACandida albicans SC5314EukaryaRF02543 + RF00002Structure of the vacant Candida albicans 80S ribosomeElectron microscopy2.3233672022-05-18
87Q08|1|1+ 7Q08|1|4Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNACandida albicans SC5314EukaryaRF02543 + RF00002Structure of Candida albicans 80S ribosome in complex with cycloheximideElectron microscopy2.5633672022-05-25
98Q5I|1|1+ 8Q5I|1|4Large subunit ribosomal RNA + 5.8S ribosomal RNA25S rRNA, 5.8S rRNACandida albicansEukaryaRF02543 + RF00002Structure of Candida albicans 80S ribosome in complex with cephaelineElectron microscopy2.4532312023-09-13
107Q0F|1|1+ 7Q0F|1|4Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNACandida albicans SC5314EukaryaRF02543 + RF00002Structure of Candida albicans 80S ribosome in complex with phyllanthosideElectron microscopy2.6433672022-05-18
117Q0R|1|1+ 7Q0R|1|4Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNACandida albicans SC5314EukaryaRF02543 + RF00002Structure of the Candida albicans 80S ribosome in complex with blasticidin sElectron microscopy2.6733672022-05-25
127Q0P|1|1+ 7Q0P|1|4Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNACandida albicans SC5314EukaryaRF02543 + RF00002Structure of the Candida albicans 80S ribosome in complex with anisomycinElectron microscopy2.7733672022-05-18

Release history

Release3.3563.3573.3583.3593.3603.3613.3623.3633.3643.3653.3663.3673.3683.3693.3703.3713.3723.3733.3743.3753.3763.377
Date2024-10-092024-10-162024-10-232024-10-302024-11-062024-11-132024-11-202024-11-272024-12-042024-12-112024-12-182024-12-252025-01-012025-01-082025-01-152025-01-222025-01-292025-02-052025-02-122025-02-192025-02-262025-03-05

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child

Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.

Showing 1 to 12 of 12 entries
#SViewPDBTitleMethodResolution#NTs
17Q0F|1|1+ 7Q0F|1|4Structure of Candida albicans 80S ribosome in complex with phyllanthosideELECTRON MICROSCOPY2.643367
27Q08|1|1+ 7Q08|1|4Structure of Candida albicans 80S ribosome in complex with cycloheximideELECTRON MICROSCOPY2.563367
37PZY|1|1+ 7PZY|1|4Structure of the vacant Candida albicans 80S ribosomeELECTRON MICROSCOPY2.323367
47Q0R|1|1+ 7Q0R|1|4Structure of the Candida albicans 80S ribosome in complex with blasticidin sELECTRON MICROSCOPY2.673367
57Q0P|1|1+ 7Q0P|1|4Structure of the Candida albicans 80S ribosome in complex with anisomycinELECTRON MICROSCOPY2.773367
68Q5I|1|1+ 8Q5I|1|4Structure of Candida albicans 80S ribosome in complex with cephaelineELECTRON MICROSCOPY2.453231
78CRE|1|AS+ 8CRE|1|AUCrystal structure of the Candida albicans 80S ribosome in complex with geneticin G418X-RAY DIFFRACTION33387
88C3A|1|ASCrystal structure of ailanthone bound to the Candida albicans 80S ribosomeX-RAY DIFFRACTION33229
98OI5|1|ASCrystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (2mM)X-RAY DIFFRACTION2.93065
108CRE|1|1+ 8CRE|1|4Crystal structure of the Candida albicans 80S ribosome in complex with geneticin G418X-RAY DIFFRACTION33373
118C3A|1|1Crystal structure of ailanthone bound to the Candida albicans 80S ribosomeX-RAY DIFFRACTION33217
128OI5|1|1Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (2mM)X-RAY DIFFRACTION2.93171

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.

7Q0F|1|1+7Q0F|1|4:7Q0F|1|1+7Q0F|1|4 = 07Q0F|1|1+7Q0F|1|4:7Q08|1|1+7Q08|1|4 = 0.00487Q0F|1|1+7Q0F|1|4:7PZY|1|1+7PZY|1|4 = 0.00607Q0F|1|1+7Q0F|1|4:7Q0R|1|1+7Q0R|1|4 = 0.00597Q0F|1|1+7Q0F|1|4:7Q0P|1|1+7Q0P|1|4 = 0.00607Q0F|1|1+7Q0F|1|4:8Q5I|1|1+8Q5I|1|4 = 0.00907Q0F|1|1+7Q0F|1|4:8CRE|1|AS+8CRE|1|AU = 0.02457Q0F|1|1+7Q0F|1|4:8C3A|1|AS = 0.02497Q0F|1|1+7Q0F|1|4:8OI5|1|AS = 0.01347Q0F|1|1+7Q0F|1|4:8CRE|1|1+8CRE|1|4 = 0.02687Q0F|1|1+7Q0F|1|4:8C3A|1|1 = 0.02757Q0F|1|1+7Q0F|1|4:8OI5|1|1 = 0.01857Q08|1|1+7Q08|1|4:7Q0F|1|1+7Q0F|1|4 = 0.00487Q08|1|1+7Q08|1|4:7Q08|1|1+7Q08|1|4 = 07Q08|1|1+7Q08|1|4:7PZY|1|1+7PZY|1|4 = 0.00567Q08|1|1+7Q08|1|4:7Q0R|1|1+7Q0R|1|4 = 0.00577Q08|1|1+7Q08|1|4:7Q0P|1|1+7Q0P|1|4 = 0.00577Q08|1|1+7Q08|1|4:8Q5I|1|1+8Q5I|1|4 = 0.00917Q08|1|1+7Q08|1|4:8CRE|1|AS+8CRE|1|AU = 0.02447Q08|1|1+7Q08|1|4:8C3A|1|AS = 0.02487Q08|1|1+7Q08|1|4:8OI5|1|AS = 0.01327Q08|1|1+7Q08|1|4:8CRE|1|1+8CRE|1|4 = 0.02667Q08|1|1+7Q08|1|4:8C3A|1|1 = 0.02747Q08|1|1+7Q08|1|4:8OI5|1|1 = 0.01837PZY|1|1+7PZY|1|4:7Q0F|1|1+7Q0F|1|4 = 0.00607PZY|1|1+7PZY|1|4:7Q08|1|1+7Q08|1|4 = 0.00567PZY|1|1+7PZY|1|4:7PZY|1|1+7PZY|1|4 = 07PZY|1|1+7PZY|1|4:7Q0R|1|1+7Q0R|1|4 = 0.00127PZY|1|1+7PZY|1|4:7Q0P|1|1+7Q0P|1|4 = 0.00157PZY|1|1+7PZY|1|4:8Q5I|1|1+8Q5I|1|4 = 0.00847PZY|1|1+7PZY|1|4:8CRE|1|AS+8CRE|1|AU = 0.02427PZY|1|1+7PZY|1|4:8C3A|1|AS = 0.02477PZY|1|1+7PZY|1|4:8OI5|1|AS = 0.01277PZY|1|1+7PZY|1|4:8CRE|1|1+8CRE|1|4 = 0.02647PZY|1|1+7PZY|1|4:8C3A|1|1 = 0.02727PZY|1|1+7PZY|1|4:8OI5|1|1 = 0.01787Q0R|1|1+7Q0R|1|4:7Q0F|1|1+7Q0F|1|4 = 0.00597Q0R|1|1+7Q0R|1|4:7Q08|1|1+7Q08|1|4 = 0.00577Q0R|1|1+7Q0R|1|4:7PZY|1|1+7PZY|1|4 = 0.00127Q0R|1|1+7Q0R|1|4:7Q0R|1|1+7Q0R|1|4 = 07Q0R|1|1+7Q0R|1|4:7Q0P|1|1+7Q0P|1|4 = 0.00127Q0R|1|1+7Q0R|1|4:8Q5I|1|1+8Q5I|1|4 = 0.00857Q0R|1|1+7Q0R|1|4:8CRE|1|AS+8CRE|1|AU = 0.02437Q0R|1|1+7Q0R|1|4:8C3A|1|AS = 0.02477Q0R|1|1+7Q0R|1|4:8OI5|1|AS = 0.01277Q0R|1|1+7Q0R|1|4:8CRE|1|1+8CRE|1|4 = 0.02647Q0R|1|1+7Q0R|1|4:8C3A|1|1 = 0.02717Q0R|1|1+7Q0R|1|4:8OI5|1|1 = 0.01797Q0P|1|1+7Q0P|1|4:7Q0F|1|1+7Q0F|1|4 = 0.00607Q0P|1|1+7Q0P|1|4:7Q08|1|1+7Q08|1|4 = 0.00577Q0P|1|1+7Q0P|1|4:7PZY|1|1+7PZY|1|4 = 0.00157Q0P|1|1+7Q0P|1|4:7Q0R|1|1+7Q0R|1|4 = 0.00127Q0P|1|1+7Q0P|1|4:7Q0P|1|1+7Q0P|1|4 = 07Q0P|1|1+7Q0P|1|4:8Q5I|1|1+8Q5I|1|4 = 0.00857Q0P|1|1+7Q0P|1|4:8CRE|1|AS+8CRE|1|AU = 0.02437Q0P|1|1+7Q0P|1|4:8C3A|1|AS = 0.02477Q0P|1|1+7Q0P|1|4:8OI5|1|AS = 0.01277Q0P|1|1+7Q0P|1|4:8CRE|1|1+8CRE|1|4 = 0.02647Q0P|1|1+7Q0P|1|4:8C3A|1|1 = 0.02727Q0P|1|1+7Q0P|1|4:8OI5|1|1 = 0.01798Q5I|1|1+8Q5I|1|4:7Q0F|1|1+7Q0F|1|4 = 0.00908Q5I|1|1+8Q5I|1|4:7Q08|1|1+7Q08|1|4 = 0.00918Q5I|1|1+8Q5I|1|4:7PZY|1|1+7PZY|1|4 = 0.00848Q5I|1|1+8Q5I|1|4:7Q0R|1|1+7Q0R|1|4 = 0.00858Q5I|1|1+8Q5I|1|4:7Q0P|1|1+7Q0P|1|4 = 0.00858Q5I|1|1+8Q5I|1|4:8Q5I|1|1+8Q5I|1|4 = 08Q5I|1|1+8Q5I|1|4:8CRE|1|AS+8CRE|1|AU = 0.01318Q5I|1|1+8Q5I|1|4:8C3A|1|AS = 0.01448Q5I|1|1+8Q5I|1|4:8OI5|1|AS = 0.01218Q5I|1|1+8Q5I|1|4:8CRE|1|1+8CRE|1|4 = 0.01498Q5I|1|1+8Q5I|1|4:8C3A|1|1 = 0.01628Q5I|1|1+8Q5I|1|4:8OI5|1|1 = 0.01538CRE|1|AS+8CRE|1|AU:7Q0F|1|1+7Q0F|1|4 = 0.02458CRE|1|AS+8CRE|1|AU:7Q08|1|1+7Q08|1|4 = 0.02448CRE|1|AS+8CRE|1|AU:7PZY|1|1+7PZY|1|4 = 0.02428CRE|1|AS+8CRE|1|AU:7Q0R|1|1+7Q0R|1|4 = 0.02438CRE|1|AS+8CRE|1|AU:7Q0P|1|1+7Q0P|1|4 = 0.02438CRE|1|AS+8CRE|1|AU:8Q5I|1|1+8Q5I|1|4 = 0.01318CRE|1|AS+8CRE|1|AU:8CRE|1|AS+8CRE|1|AU = 08CRE|1|AS+8CRE|1|AU:8C3A|1|AS = 0.00438CRE|1|AS+8CRE|1|AU:8OI5|1|AS = 0.00568CRE|1|AS+8CRE|1|AU:8CRE|1|1+8CRE|1|4 = 0.02598CRE|1|AS+8CRE|1|AU:8C3A|1|1 = 0.02608CRE|1|AS+8CRE|1|AU:8OI5|1|1 = 0.02558C3A|1|AS:7Q0F|1|1+7Q0F|1|4 = 0.02498C3A|1|AS:7Q08|1|1+7Q08|1|4 = 0.02488C3A|1|AS:7PZY|1|1+7PZY|1|4 = 0.02478C3A|1|AS:7Q0R|1|1+7Q0R|1|4 = 0.02478C3A|1|AS:7Q0P|1|1+7Q0P|1|4 = 0.02478C3A|1|AS:8Q5I|1|1+8Q5I|1|4 = 0.01448C3A|1|AS:8CRE|1|AS+8CRE|1|AU = 0.00438C3A|1|AS:8C3A|1|AS = 08C3A|1|AS:8OI5|1|AS = 0.00628C3A|1|AS:8CRE|1|1+8CRE|1|4 = 0.02688C3A|1|AS:8C3A|1|1 = 0.02748C3A|1|AS:8OI5|1|1 = 0.02638OI5|1|AS:7Q0F|1|1+7Q0F|1|4 = 0.01348OI5|1|AS:7Q08|1|1+7Q08|1|4 = 0.01328OI5|1|AS:7PZY|1|1+7PZY|1|4 = 0.01278OI5|1|AS:7Q0R|1|1+7Q0R|1|4 = 0.01278OI5|1|AS:7Q0P|1|1+7Q0P|1|4 = 0.01278OI5|1|AS:8Q5I|1|1+8Q5I|1|4 = 0.01218OI5|1|AS:8CRE|1|AS+8CRE|1|AU = 0.00568OI5|1|AS:8C3A|1|AS = 0.00628OI5|1|AS:8OI5|1|AS = 08OI5|1|AS:8CRE|1|1+8CRE|1|4 = 0.01298OI5|1|AS:8C3A|1|1 = 0.01368OI5|1|AS:8OI5|1|1 = 0.01328CRE|1|1+8CRE|1|4:7Q0F|1|1+7Q0F|1|4 = 0.02688CRE|1|1+8CRE|1|4:7Q08|1|1+7Q08|1|4 = 0.02668CRE|1|1+8CRE|1|4:7PZY|1|1+7PZY|1|4 = 0.02648CRE|1|1+8CRE|1|4:7Q0R|1|1+7Q0R|1|4 = 0.02648CRE|1|1+8CRE|1|4:7Q0P|1|1+7Q0P|1|4 = 0.02648CRE|1|1+8CRE|1|4:8Q5I|1|1+8Q5I|1|4 = 0.01498CRE|1|1+8CRE|1|4:8CRE|1|AS+8CRE|1|AU = 0.02598CRE|1|1+8CRE|1|4:8C3A|1|AS = 0.02688CRE|1|1+8CRE|1|4:8OI5|1|AS = 0.01298CRE|1|1+8CRE|1|4:8CRE|1|1+8CRE|1|4 = 08CRE|1|1+8CRE|1|4:8C3A|1|1 = 0.00508CRE|1|1+8CRE|1|4:8OI5|1|1 = 0.00928C3A|1|1:7Q0F|1|1+7Q0F|1|4 = 0.02758C3A|1|1:7Q08|1|1+7Q08|1|4 = 0.02748C3A|1|1:7PZY|1|1+7PZY|1|4 = 0.02728C3A|1|1:7Q0R|1|1+7Q0R|1|4 = 0.02718C3A|1|1:7Q0P|1|1+7Q0P|1|4 = 0.02728C3A|1|1:8Q5I|1|1+8Q5I|1|4 = 0.01628C3A|1|1:8CRE|1|AS+8CRE|1|AU = 0.02608C3A|1|1:8C3A|1|AS = 0.02748C3A|1|1:8OI5|1|AS = 0.01368C3A|1|1:8CRE|1|1+8CRE|1|4 = 0.00508C3A|1|1:8C3A|1|1 = 08C3A|1|1:8OI5|1|1 = 0.00958OI5|1|1:7Q0F|1|1+7Q0F|1|4 = 0.01858OI5|1|1:7Q08|1|1+7Q08|1|4 = 0.01838OI5|1|1:7PZY|1|1+7PZY|1|4 = 0.01788OI5|1|1:7Q0R|1|1+7Q0R|1|4 = 0.01798OI5|1|1:7Q0P|1|1+7Q0P|1|4 = 0.01798OI5|1|1:8Q5I|1|1+8Q5I|1|4 = 0.01538OI5|1|1:8CRE|1|AS+8CRE|1|AU = 0.02558OI5|1|1:8C3A|1|AS = 0.02638OI5|1|1:8OI5|1|AS = 0.01328OI5|1|1:8CRE|1|1+8CRE|1|4 = 0.00928OI5|1|1:8C3A|1|1 = 0.00958OI5|1|1:8OI5|1|1 = 07Q0F|1|1+7Q0F|1|47Q08|1|1+7Q08|1|47PZY|1|1+7PZY|1|47Q0R|1|1+7Q0R|1|47Q0P|1|1+7Q0P|1|48Q5I|1|1+8Q5I|1|48CRE|1|AS+8CRE|1|AU8C3A|1|AS8OI5|1|AS8CRE|1|1+8CRE|1|48C3A|1|18OI5|1|1Discrepancy0.000.010.010.010.020.03

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