Equivalence class NR_3.0_72291.2 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 8FFI|1|C (rep) | guide RNA | synthetic construct | Structure of tetramerized MapSPARTA upon guide RNA-mediated target DNA binding | Electron microscopy | 2.7 | 2023-08-23 | |||
| 2 | 8FFI|1|G | guide RNA | synthetic construct | Structure of tetramerized MapSPARTA upon guide RNA-mediated target DNA binding | Electron microscopy | 2.7 | 2023-08-23 | |||
| 3 | 8IFK|1|C | guide RNA | Escherichia coli 'BL21-Gold(DE3)pLysS AG | Cryo-EM structure of monomeric SPARTA gRNA-ssDNA target complex | Electron microscopy | 2.54 | 2024-01-17 | |||
| 4 | 8FFI|1|O | guide RNA | synthetic construct | Structure of tetramerized MapSPARTA upon guide RNA-mediated target DNA binding | Electron microscopy | 2.7 | 2023-08-23 | |||
| 5 | 8IFM|1|P | guide RNA | Escherichia coli 'BL21-Gold(DE3)pLysS AG | Cryo-EM structure of tetrameric SPARTA gRNA-ssDNA target complex in state 2 | Electron microscopy | 2.92 | 2024-01-17 | |||
| 6 | 8J7S|1|C | RNA (5'-R(P*UP*GP*AP*CP*GP*GP*CP*UP*CP*UP*AP*AP*UP*CP*UP*AP*UP*UP*A)-3') | Maribacter polysiphoniae | Structure of the SPARTA complex | Electron microscopy | 2.84 | 2024-03-06 | |||
| 7 | 8J7S|1|G | RNA (5'-R(P*UP*GP*AP*CP*GP*GP*CP*UP*CP*UP*AP*AP*UP*CP*UP*AP*UP*UP*A)-3') | Maribacter polysiphoniae | Structure of the SPARTA complex | Electron microscopy | 2.84 | 2024-03-06 | |||
| 8 | 8J7S|1|K | RNA (5'-R(P*UP*GP*AP*CP*GP*GP*CP*UP*CP*UP*AP*AP*UP*CP*UP*AP*UP*UP*A)-3') | Maribacter polysiphoniae | Structure of the SPARTA complex | Electron microscopy | 2.84 | 2024-03-06 | |||
| 9 | 8J7S|1|O | RNA (5'-R(P*UP*GP*AP*CP*GP*GP*CP*UP*CP*UP*AP*AP*UP*CP*UP*AP*UP*UP*A)-3') | Maribacter polysiphoniae | Structure of the SPARTA complex | Electron microscopy | 2.84 | 2024-03-06 | |||
| 10 | 8FFI|1|J | guide RNA | synthetic construct | Structure of tetramerized MapSPARTA upon guide RNA-mediated target DNA binding | Electron microscopy | 2.7 | 2023-08-23 | |||
| 11 | 8IFM|1|C | guide RNA | Escherichia coli 'BL21-Gold(DE3)pLysS AG | Cryo-EM structure of tetrameric SPARTA gRNA-ssDNA target complex in state 2 | Electron microscopy | 2.92 | 2024-01-17 | |||
| 12 | 8IFM|1|H | guide RNA | Escherichia coli 'BL21-Gold(DE3)pLysS AG | Cryo-EM structure of tetrameric SPARTA gRNA-ssDNA target complex in state 2 | Electron microscopy | 2.92 | 2024-01-17 | |||
| 13 | 8IFM|1|L | guide RNA | Escherichia coli 'BL21-Gold(DE3)pLysS AG | Cryo-EM structure of tetrameric SPARTA gRNA-ssDNA target complex in state 2 | Electron microscopy | 2.92 | 2024-01-17 | |||
| 14 | 8SPO|1|G | guide RNA | Maribacter polysiphoniae | Tetramerized activation of MapSPARTA bound with NAD+ | Electron microscopy | 2.98 | 2023-08-23 | |||
| 15 | 8SPO|1|C | guide RNA | Maribacter polysiphoniae | Tetramerized activation of MapSPARTA bound with NAD+ | Electron microscopy | 2.98 | 2023-08-23 | |||
| 16 | 8SPO|1|J | guide RNA | Maribacter polysiphoniae | Tetramerized activation of MapSPARTA bound with NAD+ | Electron microscopy | 2.98 | 2023-08-23 | |||
| 17 | 8SPO|1|O | guide RNA | Maribacter polysiphoniae | Tetramerized activation of MapSPARTA bound with NAD+ | Electron microscopy | 2.98 | 2023-08-23 | |||
| 18 | 8K34|1|C | RNA (5'-R(P*AP*AP*AP*CP*GP*GP*CP*UP*CP*UP*AP*AP*UP*CP*UP*AP*UP*UP*AP*GP*U)-3') | Escherichia coli 'BL21-Gold(DE3)pLysS AG | Cryo-EM structure of SPARTA gRNA binary complex | Electron microscopy | 2.81 | 2024-01-17 |
Release history
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
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Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.
| #S | View | PDB | Title | Method | Resolution | Length |
|---|---|---|---|---|---|---|
| 1 | 8K34|1|C | Cryo-EM structure of SPARTA gRNA binary complex | ELECTRON MICROSCOPY | 2.81 | 4 | |
| 2 | 8IFK|1|C | Cryo-EM structure of monomeric SPARTA gRNA-ssDNA target complex | ELECTRON MICROSCOPY | 2.54 | 20 | |
| 3 | 8IFM|1|L | Cryo-EM structure of tetrameric SPARTA gRNA-ssDNA target complex in state 2 | ELECTRON MICROSCOPY | 2.92 | 20 | |
| 4 | 8IFM|1|C | Cryo-EM structure of tetrameric SPARTA gRNA-ssDNA target complex in state 2 | ELECTRON MICROSCOPY | 2.92 | 20 | |
| 5 | 8IFM|1|H | Cryo-EM structure of tetrameric SPARTA gRNA-ssDNA target complex in state 2 | ELECTRON MICROSCOPY | 2.92 | 20 | |
| 6 | 8IFM|1|P | Cryo-EM structure of tetrameric SPARTA gRNA-ssDNA target complex in state 2 | ELECTRON MICROSCOPY | 2.92 | 20 | |
| 7 | 8FFI|1|G | Structure of tetramerized MapSPARTA upon guide RNA-mediated target DNA binding | ELECTRON MICROSCOPY | 2.7 | 21 | |
| 8 | 8SPO|1|G | Tetramerized activation of MapSPARTA bound with NAD+ | ELECTRON MICROSCOPY | 2.98 | 21 | |
| 9 | 8FFI|1|C | Structure of tetramerized MapSPARTA upon guide RNA-mediated target DNA binding | ELECTRON MICROSCOPY | 2.7 | 21 | |
| 10 | 8SPO|1|C | Tetramerized activation of MapSPARTA bound with NAD+ | ELECTRON MICROSCOPY | 2.98 | 19 | |
| 11 | 8FFI|1|O | Structure of tetramerized MapSPARTA upon guide RNA-mediated target DNA binding | ELECTRON MICROSCOPY | 2.7 | 21 | |
| 12 | 8SPO|1|O | Tetramerized activation of MapSPARTA bound with NAD+ | ELECTRON MICROSCOPY | 2.98 | 19 | |
| 13 | 8FFI|1|J | Structure of tetramerized MapSPARTA upon guide RNA-mediated target DNA binding | ELECTRON MICROSCOPY | 2.7 | 21 | |
| 14 | 8SPO|1|J | Tetramerized activation of MapSPARTA bound with NAD+ | ELECTRON MICROSCOPY | 2.98 | 21 | |
| 15 | 8J7S|1|G | Structure of the SPARTA complex | ELECTRON MICROSCOPY | 2.84 | 19 | |
| 16 | 8J7S|1|O | Structure of the SPARTA complex | ELECTRON MICROSCOPY | 2.84 | 19 | |
| 17 | 8J7S|1|C | Structure of the SPARTA complex | ELECTRON MICROSCOPY | 2.84 | 19 | |
| 18 | 8J7S|1|K | Structure of the SPARTA complex | ELECTRON MICROSCOPY | 2.84 | 19 |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.
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