Equivalence class NR_3.0_78541.3 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | #NTs | Date |
|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 9AXU|1|2+ 9AXU|1|4 (rep) | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 28S ribosomal RNA, 5.8S ribosomal RNA | Schizosaccharomyces pombe | Eukarya | RF02543 + RF00002 | Non-translating S. pombe ribosome large subunit | Electron microscopy | 1.94 | 3369 | 2024-10-16 |
| 2 | 9AXT|1|B2+ 9AXT|1|B4 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 28S ribosomal RNA, 5.8S ribosomal RNA | Schizosaccharomyces pombe | Eukarya | RF02543 + RF00002 | Non-translating S. pombe ribosome | Electron microscopy | 2.4 | 3369 | 2024-10-16 |
| 3 | 9AXV|1|B2+ 9AXV|1|B4 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 28S ribosomal RNA, 5.8S ribosomal RNA | Schizosaccharomyces pombe | Eukarya | RF02543 + RF00002 | Translating S. pombe ribosome | Electron microscopy | 2.4 | 3369 | 2024-10-16 |
| 4 | 8EUG|1|1+ 8EUG|1|2 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | RNA (152-MER), RNA (2863-MER) | Schizosaccharomyces pombe | Eukarya | RF02543 + RF00002 | Ytm1 associated nascent 60S ribosome State 3 | Electron microscopy | 2.8 | 3020 | 2022-11-30 |
| 5 | 8ESQ|1|1+ 8ESQ|1|2 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | RNA (150-MER), RNA (2231-MER) | Schizosaccharomyces pombe | Eukarya | RF02543 + RF00002 | Ytm1 associated nascent 60S ribosome State 2 | Electron microscopy | 2.8 | 2380 | 2022-11-30 |
| 6 | 8EV3|1|1+ 8EV3|1|2 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | RNA (1452-MER), RNA (150-MER) | Schizosaccharomyces pombe | Eukarya | RF02543 + RF00002 | Ytm1 associated 60S nascent ribosome (-Fkbp39) State 1B | Electron microscopy | 3 | 1602 | 2022-11-30 |
| 7 | 8EUY|1|1+ 8EUY|1|2 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | RNA (1095-MER), RNA (148-MER) | Schizosaccharomyces pombe | Eukarya | RF02543 + RF00002 | Ytm1 associated nascent 60S ribosome (-fkbp39) State 1A | Electron microscopy | 3 | 1563 | 2022-11-30 |
Release history
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|
Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.
| #S | View | PDB | Title | Method | Resolution | #NTs |
|---|---|---|---|---|---|---|
| 1 | 9AXV|1|B2+ 9AXV|1|B4 | Translating S. pombe ribosome | ELECTRON MICROSCOPY | 2.4 | 3369 | |
| 2 | 9AXT|1|B2+ 9AXT|1|B4 | Non-translating S. pombe ribosome | ELECTRON MICROSCOPY | 2.4 | 3369 | |
| 3 | 9AXU|1|2+ 9AXU|1|4 | Non-translating S. pombe ribosome large subunit | ELECTRON MICROSCOPY | 1.94 | 3369 | |
| 4 | 8EUG|1|1+ 8EUG|1|2 | Ytm1 associated nascent 60S ribosome State 3 | ELECTRON MICROSCOPY | 2.8 | 3020 | |
| 5 | 8EUY|1|1+ 8EUY|1|2 | Ytm1 associated nascent 60S ribosome (-fkbp39) State 1A | ELECTRON MICROSCOPY | 3 | 1563 | |
| 6 | 8EV3|1|1+ 8EV3|1|2 | Ytm1 associated 60S nascent ribosome (-Fkbp39) State 1B | ELECTRON MICROSCOPY | 3 | 1602 | |
| 7 | 8ESQ|1|1+ 8ESQ|1|2 | Ytm1 associated nascent 60S ribosome State 2 | ELECTRON MICROSCOPY | 2.8 | 2380 |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.
Coloring options: