Equivalence class NR_3.0_79027.1 Current
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | #NTs | Date |
|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 7QQX|1|A+ 7QQX|1|C+ 7QQX|1|D (rep) | Trans-activating crRNA | FANCF off-target5 non-target strand, FANCF off-target5 target strand, FANCF sgRNA | synthetic construct | Synthetic | RF02348 | SpCas9 bound to FANCF off-target5 DNA substrate | X-ray diffraction | 2.4 | 123 | 2022-10-26 |
| 2 | 7QQS|1|A+ 7QQS|1|C+ 7QQS|1|D | Trans-activating crRNA | FANCF on-target non-target strand, FANCF on-target target strand, FANCF sgRNA | synthetic construct | Synthetic | RF02348 | SpCas9 bound to FANCF on-target DNA substrate | X-ray diffraction | 2.4 | 123 | 2022-10-26 |
| 3 | 7QQU|1|A+ 7QQU|1|C+ 7QQU|1|D | Trans-activating crRNA | FANCF off-target2 non-target strand, FANCF off-target2 target strand, FANCF sgRNA | synthetic construct | Synthetic | RF02348 | SpCas9 bound to FANCF off-target2 DNA substrate | X-ray diffraction | 2.45 | 123 | 2022-10-26 |
| 4 | 7QQT|1|A+ 7QQT|1|C+ 7QQT|1|D | Trans-activating crRNA | FANCF off-target1 non-target strand, FANCF off-target1 target strand, FANCF sgRNA | synthetic construct | Synthetic | RF02348 | SpCas9 bound to FANCF off-target1 DNA substrate | X-ray diffraction | 2.5 | 123 | 2022-10-26 |
| 5 | 7QQZ|1|A+ 7QQZ|1|C+ 7QQZ|1|D | Trans-activating crRNA | FANCF off-target7 non-target strand, FANCF off-target7 target strand, FANCF sgRNA | synthetic construct | Synthetic | RF02348 | SpCas9 bound to FANCF off-target7 DNA substrate | X-ray diffraction | 2.25 | 122 | 2022-10-26 |
| 6 | 7QQV|1|A+ 7QQV|1|C+ 7QQV|1|D | Trans-activating crRNA | FANCF off-target3 non-target strand, FANCF off-target3 target strand, FANCF sgRNA | synthetic construct | Synthetic | RF02348 | SpCas9 bound to FANCF off-target3 DNA substrate | X-ray diffraction | 2.25 | 123 | 2022-10-26 |
Release history
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
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Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.
| #S | View | PDB | Title | Method | Resolution | #NTs |
|---|---|---|---|---|---|---|
| 1 | 7QQV|1|A+ 7QQV|1|C+ 7QQV|1|D | SpCas9 bound to FANCF off-target3 DNA substrate | X-RAY DIFFRACTION | 2.25 | 123 | |
| 2 | 7QQU|1|A+ 7QQU|1|C+ 7QQU|1|D | SpCas9 bound to FANCF off-target2 DNA substrate | X-RAY DIFFRACTION | 2.45 | 123 | |
| 3 | 7QQS|1|A+ 7QQS|1|C+ 7QQS|1|D | SpCas9 bound to FANCF on-target DNA substrate | X-RAY DIFFRACTION | 2.4 | 123 | |
| 4 | 7QQT|1|A+ 7QQT|1|C+ 7QQT|1|D | SpCas9 bound to FANCF off-target1 DNA substrate | X-RAY DIFFRACTION | 2.5 | 123 | |
| 5 | 7QQZ|1|A+ 7QQZ|1|C+ 7QQZ|1|D | SpCas9 bound to FANCF off-target7 DNA substrate | X-RAY DIFFRACTION | 2.25 | 122 | |
| 6 | 7QQX|1|A+ 7QQX|1|C+ 7QQX|1|D | SpCas9 bound to FANCF off-target5 DNA substrate | X-RAY DIFFRACTION | 2.4 | 123 |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.
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