Equivalence class NR_3.0_79777.3 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | #NTs | Date |
|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 7XJG|1|H+ 7XJG|1|I (rep) | RNA (14-MER), RNA (81-MER) | Escherichia coli | Cryo-EM structure of E.coli retron-Ec86 in complex with its effector at 2.5 angstrom | Electron microscopy | 2.51 | 58 | 2022-09-14 | |||
| 2 | 8QBL|1|b | Retron-Eco1-A2, Retron-Eco1-msr | Escherichia coli BL21(DE3) | Retron-Eco1 filament with inactive effector (E106A, 2 segments) | Electron microscopy | 2.66 | 61 | 2024-06-05 | |||
| 3 | 7XJG|1|E+ 7XJG|1|F | RNA (14-MER), RNA (81-MER) | Escherichia coli | Cryo-EM structure of E.coli retron-Ec86 in complex with its effector at 2.5 angstrom | Electron microscopy | 2.51 | 58 | 2022-09-14 | |||
| 4 | 9JM0|1|H+ 9JM0|1|G | DNA (85-MER), RNA (82-MER) | Escherichia coli | retron Ec86-effector fiber | Electron microscopy | 2.7 | 97 | 2024-12-18 | |||
| 5 | 9JM0|1|R+ 9JM0|1|Q | DNA (85-MER), RNA (82-MER) | Escherichia coli | retron Ec86-effector fiber | Electron microscopy | 2.7 | 97 | 2024-12-18 | |||
| 6 | 8QBL|1|C | Retron-Eco1-A2, Retron-Eco1-msr | Escherichia coli BL21(DE3) | Retron-Eco1 filament with inactive effector (E106A, 2 segments) | Electron microscopy | 2.66 | 61 | 2024-06-05 | |||
| 7 | 9JM0|1|N | RNA (82-MER) | Escherichia coli | retron Ec86-effector fiber | Electron microscopy | 2.7 | 58 | 2024-12-18 | |||
| 8 | 8QBL|1|R | Retron-Eco1-A2, Retron-Eco1-msr | Escherichia coli BL21(DE3) | Retron-Eco1 filament with inactive effector (E106A, 2 segments) | Electron microscopy | 2.66 | 61 | 2024-06-05 | |||
| 9 | 8QBL|1|M | Retron-Eco1-A2, Retron-Eco1-msr | Escherichia coli BL21(DE3) | Retron-Eco1 filament with inactive effector (E106A, 2 segments) | Electron microscopy | 2.66 | 58 | 2024-06-05 | |||
| 10 | 8QBL|1|W | Retron-Eco1-A2, Retron-Eco1-msr | Escherichia coli BL21(DE3) | Retron-Eco1 filament with inactive effector (E106A, 2 segments) | Electron microscopy | 2.66 | 61 | 2024-06-05 | |||
| 11 | 7V9X|1|H+ 7V9X|1|I | RNA (14-MER), RNA (81-MER) | Escherichia coli | Cryo-EM structure of E.coli retron-Ec86 in complex with its effector at 2.8 angstrom | Electron microscopy | 2.82 | 58 | 2022-08-31 | |||
| 12 | 9JM0|1|E | RNA (82-MER) | Escherichia coli | retron Ec86-effector fiber | Electron microscopy | 2.7 | 58 | 2024-12-18 | |||
| 13 | 7V9X|1|E+ 7V9X|1|F | RNA (14-MER), RNA (81-MER) | Escherichia coli | Cryo-EM structure of E.coli retron-Ec86 in complex with its effector at 2.8 angstrom | Electron microscopy | 2.82 | 58 | 2022-08-31 | |||
| 14 | 8QBK|1|W | Retron-Eco1-A2, Retron-Eco1-msr | Escherichia coli BL21(DE3) | Retron-Eco1 filament with ADP-ribosylated Effector (local map with 1 segment) | Electron microscopy | 2.99 | 61 | 2024-06-05 | |||
| 15 | 8QBL|1|O | Retron-Eco1-A2, Retron-Eco1-msr | Escherichia coli BL21(DE3) | Retron-Eco1 filament with inactive effector (E106A, 2 segments) | Electron microscopy | 2.66 | 61 | 2024-06-05 | |||
| 16 | 8QBK|1|C | Retron-Eco1-A2, Retron-Eco1-msr | Escherichia coli BL21(DE3) | Retron-Eco1 filament with ADP-ribosylated Effector (local map with 1 segment) | Electron microscopy | 2.99 | 61 | 2024-06-05 | |||
| 17 | 8QBK|1|M | Retron-Eco1-A2, Retron-Eco1-msr | Escherichia coli BL21(DE3) | Retron-Eco1 filament with ADP-ribosylated Effector (local map with 1 segment) | Electron microscopy | 2.99 | 61 | 2024-06-05 | |||
| 18 | 8QBK|1|R | Retron-Eco1-A2, Retron-Eco1-msr | Escherichia coli BL21(DE3) | Retron-Eco1 filament with ADP-ribosylated Effector (local map with 1 segment) | Electron microscopy | 2.99 | 61 | 2024-06-05 |
Release history
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|
Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.
| #S | View | PDB | Title | Method | Resolution | #NTs |
|---|---|---|---|---|---|---|
| 1 | 9JM0|1|N | retron Ec86-effector fiber | ELECTRON MICROSCOPY | 2.7 | 58 | |
| 2 | 9JM0|1|H+ 9JM0|1|G | retron Ec86-effector fiber | ELECTRON MICROSCOPY | 2.7 | 97 | |
| 3 | 9JM0|1|E | retron Ec86-effector fiber | ELECTRON MICROSCOPY | 2.7 | 58 | |
| 4 | 7XJG|1|E+ 7XJG|1|F | Cryo-EM structure of E.coli retron-Ec86 in complex with its effector at 2.5 angstrom | ELECTRON MICROSCOPY | 2.51 | 58 | |
| 5 | 7V9X|1|E+ 7V9X|1|F | Cryo-EM structure of E.coli retron-Ec86 in complex with its effector at 2.8 angstrom | ELECTRON MICROSCOPY | 2.82 | 58 | |
| 6 | 7V9X|1|H+ 7V9X|1|I | Cryo-EM structure of E.coli retron-Ec86 in complex with its effector at 2.8 angstrom | ELECTRON MICROSCOPY | 2.82 | 58 | |
| 7 | 7XJG|1|H+ 7XJG|1|I | Cryo-EM structure of E.coli retron-Ec86 in complex with its effector at 2.5 angstrom | ELECTRON MICROSCOPY | 2.51 | 58 | |
| 8 | 8QBL|1|O | Retron-Eco1 filament with inactive effector (E106A, 2 segments) | ELECTRON MICROSCOPY | 2.66 | 61 | |
| 9 | 8QBK|1|M | Retron-Eco1 filament with ADP-ribosylated Effector (local map with 1 segment) | ELECTRON MICROSCOPY | 2.99 | 61 | |
| 10 | 8QBK|1|C | Retron-Eco1 filament with ADP-ribosylated Effector (local map with 1 segment) | ELECTRON MICROSCOPY | 2.99 | 61 | |
| 11 | 8QBL|1|C | Retron-Eco1 filament with inactive effector (E106A, 2 segments) | ELECTRON MICROSCOPY | 2.66 | 61 | |
| 12 | 8QBL|1|M | Retron-Eco1 filament with inactive effector (E106A, 2 segments) | ELECTRON MICROSCOPY | 2.66 | 58 | |
| 13 | 8QBL|1|W | Retron-Eco1 filament with inactive effector (E106A, 2 segments) | ELECTRON MICROSCOPY | 2.66 | 61 | |
| 14 | 8QBL|1|R | Retron-Eco1 filament with inactive effector (E106A, 2 segments) | ELECTRON MICROSCOPY | 2.66 | 61 | |
| 15 | 8QBK|1|W | Retron-Eco1 filament with ADP-ribosylated Effector (local map with 1 segment) | ELECTRON MICROSCOPY | 2.99 | 61 | |
| 16 | 8QBK|1|R | Retron-Eco1 filament with ADP-ribosylated Effector (local map with 1 segment) | ELECTRON MICROSCOPY | 2.99 | 61 | |
| 17 | 8QBL|1|b | Retron-Eco1 filament with inactive effector (E106A, 2 segments) | ELECTRON MICROSCOPY | 2.66 | 61 | |
| 18 | 9JM0|1|R+ 9JM0|1|Q | retron Ec86-effector fiber | ELECTRON MICROSCOPY | 2.7 | 97 |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.
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