RNA 3D Hub //

Equivalence class NR_3.0_88157.4 Obsolete

#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodRes. Å#NTsDate
17EFG|1|A (rep)RNA (5'-R(*GP*GP*CP*GP*AP*AP*GP*AP*AP*CP*CP*GP*GP*GP*GP*AP*GP*CP*C)-3')synthetic constructRNA kink-turn motifX-ray diffraction2.6192022-04-13
27F8Z|1|I+ 7F8Z|1|JRNA (5'-R(*GP*GP*CP*GP*A)-D(P*(2PR))-R(P*GP*AP*AP*CP*CP*GP*GP*GP*GP*AP*GP*CP*C)-3')synthetic constructRNA kink-turn motif with 2-aminopurineX-ray diffraction3382022-07-06
37F8Z|1|G+ 7F8Z|1|HRNA (5'-R(*GP*GP*CP*GP*A)-D(P*(2PR))-R(P*GP*AP*AP*CP*CP*GP*GP*GP*GP*AP*GP*CP*C)-3')synthetic constructRNA kink-turn motif with 2-aminopurineX-ray diffraction3382022-07-06
47F8Z|1|A+ 7F8Z|1|BRNA (5'-R(*GP*GP*CP*GP*A)-D(P*(2PR))-R(P*GP*AP*AP*CP*CP*GP*GP*GP*GP*AP*GP*CP*C)-3')synthetic constructRNA kink-turn motif with 2-aminopurineX-ray diffraction3382022-07-06
57F8Z|1|E+ 7F8Z|1|FRNA (5'-R(*GP*GP*CP*GP*A)-D(P*(2PR))-R(P*GP*AP*AP*CP*CP*GP*GP*GP*GP*AP*GP*CP*C)-3')synthetic constructRNA kink-turn motif with 2-aminopurineX-ray diffraction3382022-07-06
67F8Z|1|C+ 7F8Z|1|DRNA (5'-R(*GP*GP*CP*GP*A)-D(P*(2PR))-R(P*GP*AP*AP*CP*CP*GP*GP*GP*GP*AP*GP*CP*C)-3')synthetic constructRNA kink-turn motif with 2-aminopurineX-ray diffraction3382022-07-06
77EI9|1|A+ 7EI9|1|BRNA (5'-R(*GP*GP*CP*GP*A)-D(P*(4PC))-R(P*GP*AP*AP*CP*CP*GP*GP*GP*GP*AP*GP*CP*C)-3')synthetic constructRNA kink-turn motif with pyrrolo cytosineX-ray diffraction2.7382022-03-30
87EFH|1|ARNA (5'-R(*GP*GP*CP*GP*AP*AP*GP*AP*AP*CP*CP*GP*GP*GP*GP*AP*GP*CP*C)-3')synthetic constructRNA kink-turn motifX-ray diffraction2.7192022-03-23
97EFI|1|ADNA/RNA (5'-R(*GP*GP*CP*GP*AP*AP*GP*AP*AP*CP*CP*(OMG)P*(OMG)P*(OMG))-D(P*GP*A)-R(P*GP*(OMC)P*(OMC))-3')synthetic constructRNA kink-turn motif composed of RNA, DNA and 2'-O-methyl RNAX-ray diffraction2.9172022-03-30
107EIA|1|G+ 7EIA|1|HRNA (5'-R(*GP*GP*CP*GP*A)-D(P*(4PC))-R(P*GP*AP*AP*CP*CP*GP*GP*GP*GP*AP*GP*CP*C)-3')synthetic constructRNA kink-turn motif with pyrrolo cytosineX-ray diffraction3382022-03-30
117EIA|1|A+ 7EIA|1|BRNA (5'-R(*GP*GP*CP*GP*A)-D(P*(4PC))-R(P*GP*AP*AP*CP*CP*GP*GP*GP*GP*AP*GP*CP*C)-3')synthetic constructRNA kink-turn motif with pyrrolo cytosineX-ray diffraction3382022-03-30
127EIA|1|C+ 7EIA|1|DRNA (5'-R(*GP*GP*CP*GP*A)-D(P*(4PC))-R(P*GP*AP*AP*CP*CP*GP*GP*GP*GP*AP*GP*CP*C)-3')synthetic constructRNA kink-turn motif with pyrrolo cytosineX-ray diffraction3382022-03-30
137EIA|1|E+ 7EIA|1|FRNA (5'-R(*GP*GP*CP*GP*A)-D(P*(4PC))-R(P*GP*AP*AP*CP*CP*GP*GP*GP*GP*AP*GP*CP*C)-3')synthetic constructRNA kink-turn motif with pyrrolo cytosineX-ray diffraction3382022-03-30

Release history

Release3.3333.3343.3353.3363.3373.3383.3393.3403.3413.3423.3433.3443.3453.3463.3473.3483.3493.3503.3513.3523.3533.3543.3553.3563.3573.3583.3593.3603.3613.3623.3633.3643.3653.3663.3673.3683.3693.3703.3713.3723.3733.3743.3753.3763.377
Date2024-05-012024-05-082024-05-152024-05-222024-05-292024-06-052024-06-122024-06-192024-06-262024-07-032024-07-102024-07-172024-07-252024-07-312024-08-072024-08-142024-08-212024-08-282024-09-042024-09-112024-09-182024-09-252024-10-022024-10-092024-10-162024-10-232024-10-302024-11-062024-11-132024-11-202024-11-272024-12-042024-12-112024-12-182024-12-252025-01-012025-01-082025-01-152025-01-222025-01-292025-02-052025-02-122025-02-192025-02-262025-03-05

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child

Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.

#SViewPDBTitleMethodResolution#NTs
17EFH|1|ARNA kink-turn motifX-RAY DIFFRACTION2.719
27EIA|1|G+ 7EIA|1|HRNA kink-turn motif with pyrrolo cytosineX-RAY DIFFRACTION338
37EIA|1|A+ 7EIA|1|BRNA kink-turn motif with pyrrolo cytosineX-RAY DIFFRACTION338
47EIA|1|E+ 7EIA|1|FRNA kink-turn motif with pyrrolo cytosineX-RAY DIFFRACTION338
57EIA|1|C+ 7EIA|1|DRNA kink-turn motif with pyrrolo cytosineX-RAY DIFFRACTION338
67EI9|1|A+ 7EI9|1|BRNA kink-turn motif with pyrrolo cytosineX-RAY DIFFRACTION2.738
77F8Z|1|A+ 7F8Z|1|BRNA kink-turn motif with 2-aminopurineX-RAY DIFFRACTION338
87F8Z|1|C+ 7F8Z|1|DRNA kink-turn motif with 2-aminopurineX-RAY DIFFRACTION338
97F8Z|1|G+ 7F8Z|1|HRNA kink-turn motif with 2-aminopurineX-RAY DIFFRACTION338
107F8Z|1|I+ 7F8Z|1|JRNA kink-turn motif with 2-aminopurineX-RAY DIFFRACTION338
117F8Z|1|E+ 7F8Z|1|FRNA kink-turn motif with 2-aminopurineX-RAY DIFFRACTION338
127EFI|1|ARNA kink-turn motif composed of RNA, DNA and 2'-O-methyl RNAX-RAY DIFFRACTION2.917
137EFG|1|ARNA kink-turn motifX-RAY DIFFRACTION2.619

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.

7EFH|1|A:7EFH|1|A = 07EFH|1|A:7EIA|1|G+7EIA|1|H = 0.29767EFH|1|A:7EIA|1|A+7EIA|1|B = 0.36577EFH|1|A:7EIA|1|E+7EIA|1|F = 0.37157EFH|1|A:7EIA|1|C+7EIA|1|D = 0.38177EFH|1|A:7EI9|1|A+7EI9|1|B = 0.38637EFH|1|A:7F8Z|1|A+7F8Z|1|B = 0.34667EFH|1|A:7F8Z|1|C+7F8Z|1|D = 0.34547EFH|1|A:7F8Z|1|G+7F8Z|1|H = 0.34147EFH|1|A:7F8Z|1|I+7F8Z|1|J = 0.34627EFH|1|A:7F8Z|1|E+7F8Z|1|F = 0.38297EFH|1|A:7EFI|1|A = 0.62797EFH|1|A:7EFG|1|A = 0.72427EIA|1|G+7EIA|1|H:7EFH|1|A = 0.29767EIA|1|G+7EIA|1|H:7EIA|1|G+7EIA|1|H = 07EIA|1|G+7EIA|1|H:7EIA|1|A+7EIA|1|B = 0.15857EIA|1|G+7EIA|1|H:7EIA|1|E+7EIA|1|F = 0.18327EIA|1|G+7EIA|1|H:7EIA|1|C+7EIA|1|D = 0.16477EIA|1|G+7EIA|1|H:7EI9|1|A+7EI9|1|B = 0.25207EIA|1|G+7EIA|1|H:7F8Z|1|A+7F8Z|1|B = 0.24837EIA|1|G+7EIA|1|H:7F8Z|1|C+7F8Z|1|D = 0.26397EIA|1|G+7EIA|1|H:7F8Z|1|G+7F8Z|1|H = 0.25727EIA|1|G+7EIA|1|H:7F8Z|1|I+7F8Z|1|J = 0.24577EIA|1|G+7EIA|1|H:7F8Z|1|E+7F8Z|1|F = 0.26947EIA|1|G+7EIA|1|H:7EFI|1|A = 0.55147EIA|1|G+7EIA|1|H:7EFG|1|A = 0.58347EIA|1|A+7EIA|1|B:7EFH|1|A = 0.36577EIA|1|A+7EIA|1|B:7EIA|1|G+7EIA|1|H = 0.15857EIA|1|A+7EIA|1|B:7EIA|1|A+7EIA|1|B = 07EIA|1|A+7EIA|1|B:7EIA|1|E+7EIA|1|F = 0.15927EIA|1|A+7EIA|1|B:7EIA|1|C+7EIA|1|D = 0.19437EIA|1|A+7EIA|1|B:7EI9|1|A+7EI9|1|B = 0.26917EIA|1|A+7EIA|1|B:7F8Z|1|A+7F8Z|1|B = 0.24517EIA|1|A+7EIA|1|B:7F8Z|1|C+7F8Z|1|D = 0.26027EIA|1|A+7EIA|1|B:7F8Z|1|G+7F8Z|1|H = 0.25207EIA|1|A+7EIA|1|B:7F8Z|1|I+7F8Z|1|J = 0.23627EIA|1|A+7EIA|1|B:7F8Z|1|E+7F8Z|1|F = 0.24627EIA|1|A+7EIA|1|B:7EFI|1|A = 0.53027EIA|1|A+7EIA|1|B:7EFG|1|A = 0.53817EIA|1|E+7EIA|1|F:7EFH|1|A = 0.37157EIA|1|E+7EIA|1|F:7EIA|1|G+7EIA|1|H = 0.18327EIA|1|E+7EIA|1|F:7EIA|1|A+7EIA|1|B = 0.15927EIA|1|E+7EIA|1|F:7EIA|1|E+7EIA|1|F = 07EIA|1|E+7EIA|1|F:7EIA|1|C+7EIA|1|D = 0.22667EIA|1|E+7EIA|1|F:7EI9|1|A+7EI9|1|B = 0.28847EIA|1|E+7EIA|1|F:7F8Z|1|A+7F8Z|1|B = 0.27877EIA|1|E+7EIA|1|F:7F8Z|1|C+7F8Z|1|D = 0.27537EIA|1|E+7EIA|1|F:7F8Z|1|G+7F8Z|1|H = 0.27527EIA|1|E+7EIA|1|F:7F8Z|1|I+7F8Z|1|J = 0.26977EIA|1|E+7EIA|1|F:7F8Z|1|E+7F8Z|1|F = 0.27947EIA|1|E+7EIA|1|F:7EFI|1|A = 0.61067EIA|1|E+7EIA|1|F:7EFG|1|A = 0.58747EIA|1|C+7EIA|1|D:7EFH|1|A = 0.38177EIA|1|C+7EIA|1|D:7EIA|1|G+7EIA|1|H = 0.16477EIA|1|C+7EIA|1|D:7EIA|1|A+7EIA|1|B = 0.19437EIA|1|C+7EIA|1|D:7EIA|1|E+7EIA|1|F = 0.22667EIA|1|C+7EIA|1|D:7EIA|1|C+7EIA|1|D = 07EIA|1|C+7EIA|1|D:7EI9|1|A+7EI9|1|B = 0.21837EIA|1|C+7EIA|1|D:7F8Z|1|A+7F8Z|1|B = 0.22597EIA|1|C+7EIA|1|D:7F8Z|1|C+7F8Z|1|D = 0.24427EIA|1|C+7EIA|1|D:7F8Z|1|G+7F8Z|1|H = 0.24147EIA|1|C+7EIA|1|D:7F8Z|1|I+7F8Z|1|J = 0.22697EIA|1|C+7EIA|1|D:7F8Z|1|E+7F8Z|1|F = 0.24007EIA|1|C+7EIA|1|D:7EFI|1|A = 0.46187EIA|1|C+7EIA|1|D:7EFG|1|A = 0.47367EI9|1|A+7EI9|1|B:7EFH|1|A = 0.38637EI9|1|A+7EI9|1|B:7EIA|1|G+7EIA|1|H = 0.25207EI9|1|A+7EI9|1|B:7EIA|1|A+7EIA|1|B = 0.26917EI9|1|A+7EI9|1|B:7EIA|1|E+7EIA|1|F = 0.28847EI9|1|A+7EI9|1|B:7EIA|1|C+7EIA|1|D = 0.21837EI9|1|A+7EI9|1|B:7EI9|1|A+7EI9|1|B = 07EI9|1|A+7EI9|1|B:7F8Z|1|A+7F8Z|1|B = 0.19537EI9|1|A+7EI9|1|B:7F8Z|1|C+7F8Z|1|D = 0.21147EI9|1|A+7EI9|1|B:7F8Z|1|G+7F8Z|1|H = 0.21477EI9|1|A+7EI9|1|B:7F8Z|1|I+7F8Z|1|J = 0.21107EI9|1|A+7EI9|1|B:7F8Z|1|E+7F8Z|1|F = 0.20427EI9|1|A+7EI9|1|B:7EFI|1|A = 0.41357EI9|1|A+7EI9|1|B:7EFG|1|A = 0.43077F8Z|1|A+7F8Z|1|B:7EFH|1|A = 0.34667F8Z|1|A+7F8Z|1|B:7EIA|1|G+7EIA|1|H = 0.24837F8Z|1|A+7F8Z|1|B:7EIA|1|A+7EIA|1|B = 0.24517F8Z|1|A+7F8Z|1|B:7EIA|1|E+7EIA|1|F = 0.27877F8Z|1|A+7F8Z|1|B:7EIA|1|C+7EIA|1|D = 0.22597F8Z|1|A+7F8Z|1|B:7EI9|1|A+7EI9|1|B = 0.19537F8Z|1|A+7F8Z|1|B:7F8Z|1|A+7F8Z|1|B = 07F8Z|1|A+7F8Z|1|B:7F8Z|1|C+7F8Z|1|D = 0.07477F8Z|1|A+7F8Z|1|B:7F8Z|1|G+7F8Z|1|H = 0.06827F8Z|1|A+7F8Z|1|B:7F8Z|1|I+7F8Z|1|J = 0.07287F8Z|1|A+7F8Z|1|B:7F8Z|1|E+7F8Z|1|F = 0.07317F8Z|1|A+7F8Z|1|B:7EFI|1|A = 0.41967F8Z|1|A+7F8Z|1|B:7EFG|1|A = 0.43397F8Z|1|C+7F8Z|1|D:7EFH|1|A = 0.34547F8Z|1|C+7F8Z|1|D:7EIA|1|G+7EIA|1|H = 0.26397F8Z|1|C+7F8Z|1|D:7EIA|1|A+7EIA|1|B = 0.26027F8Z|1|C+7F8Z|1|D:7EIA|1|E+7EIA|1|F = 0.27537F8Z|1|C+7F8Z|1|D:7EIA|1|C+7EIA|1|D = 0.24427F8Z|1|C+7F8Z|1|D:7EI9|1|A+7EI9|1|B = 0.21147F8Z|1|C+7F8Z|1|D:7F8Z|1|A+7F8Z|1|B = 0.07477F8Z|1|C+7F8Z|1|D:7F8Z|1|C+7F8Z|1|D = 07F8Z|1|C+7F8Z|1|D:7F8Z|1|G+7F8Z|1|H = 0.05537F8Z|1|C+7F8Z|1|D:7F8Z|1|I+7F8Z|1|J = 0.08947F8Z|1|C+7F8Z|1|D:7F8Z|1|E+7F8Z|1|F = 0.09017F8Z|1|C+7F8Z|1|D:7EFI|1|A = 0.43987F8Z|1|C+7F8Z|1|D:7EFG|1|A = 0.43937F8Z|1|G+7F8Z|1|H:7EFH|1|A = 0.34147F8Z|1|G+7F8Z|1|H:7EIA|1|G+7EIA|1|H = 0.25727F8Z|1|G+7F8Z|1|H:7EIA|1|A+7EIA|1|B = 0.25207F8Z|1|G+7F8Z|1|H:7EIA|1|E+7EIA|1|F = 0.27527F8Z|1|G+7F8Z|1|H:7EIA|1|C+7EIA|1|D = 0.24147F8Z|1|G+7F8Z|1|H:7EI9|1|A+7EI9|1|B = 0.21477F8Z|1|G+7F8Z|1|H:7F8Z|1|A+7F8Z|1|B = 0.06827F8Z|1|G+7F8Z|1|H:7F8Z|1|C+7F8Z|1|D = 0.05537F8Z|1|G+7F8Z|1|H:7F8Z|1|G+7F8Z|1|H = 07F8Z|1|G+7F8Z|1|H:7F8Z|1|I+7F8Z|1|J = 0.06557F8Z|1|G+7F8Z|1|H:7F8Z|1|E+7F8Z|1|F = 0.08067F8Z|1|G+7F8Z|1|H:7EFI|1|A = 0.42987F8Z|1|G+7F8Z|1|H:7EFG|1|A = 0.44247F8Z|1|I+7F8Z|1|J:7EFH|1|A = 0.34627F8Z|1|I+7F8Z|1|J:7EIA|1|G+7EIA|1|H = 0.24577F8Z|1|I+7F8Z|1|J:7EIA|1|A+7EIA|1|B = 0.23627F8Z|1|I+7F8Z|1|J:7EIA|1|E+7EIA|1|F = 0.26977F8Z|1|I+7F8Z|1|J:7EIA|1|C+7EIA|1|D = 0.22697F8Z|1|I+7F8Z|1|J:7EI9|1|A+7EI9|1|B = 0.21107F8Z|1|I+7F8Z|1|J:7F8Z|1|A+7F8Z|1|B = 0.07287F8Z|1|I+7F8Z|1|J:7F8Z|1|C+7F8Z|1|D = 0.08947F8Z|1|I+7F8Z|1|J:7F8Z|1|G+7F8Z|1|H = 0.06557F8Z|1|I+7F8Z|1|J:7F8Z|1|I+7F8Z|1|J = 07F8Z|1|I+7F8Z|1|J:7F8Z|1|E+7F8Z|1|F = 0.07377F8Z|1|I+7F8Z|1|J:7EFI|1|A = 0.42347F8Z|1|I+7F8Z|1|J:7EFG|1|A = 0.43997F8Z|1|E+7F8Z|1|F:7EFH|1|A = 0.38297F8Z|1|E+7F8Z|1|F:7EIA|1|G+7EIA|1|H = 0.26947F8Z|1|E+7F8Z|1|F:7EIA|1|A+7EIA|1|B = 0.24627F8Z|1|E+7F8Z|1|F:7EIA|1|E+7EIA|1|F = 0.27947F8Z|1|E+7F8Z|1|F:7EIA|1|C+7EIA|1|D = 0.24007F8Z|1|E+7F8Z|1|F:7EI9|1|A+7EI9|1|B = 0.20427F8Z|1|E+7F8Z|1|F:7F8Z|1|A+7F8Z|1|B = 0.07317F8Z|1|E+7F8Z|1|F:7F8Z|1|C+7F8Z|1|D = 0.09017F8Z|1|E+7F8Z|1|F:7F8Z|1|G+7F8Z|1|H = 0.08067F8Z|1|E+7F8Z|1|F:7F8Z|1|I+7F8Z|1|J = 0.07377F8Z|1|E+7F8Z|1|F:7F8Z|1|E+7F8Z|1|F = 07F8Z|1|E+7F8Z|1|F:7EFI|1|A = 0.39857F8Z|1|E+7F8Z|1|F:7EFG|1|A = 0.39897EFI|1|A:7EFH|1|A = 0.62797EFI|1|A:7EIA|1|G+7EIA|1|H = 0.55147EFI|1|A:7EIA|1|A+7EIA|1|B = 0.53027EFI|1|A:7EIA|1|E+7EIA|1|F = 0.61067EFI|1|A:7EIA|1|C+7EIA|1|D = 0.46187EFI|1|A:7EI9|1|A+7EI9|1|B = 0.41357EFI|1|A:7F8Z|1|A+7F8Z|1|B = 0.41967EFI|1|A:7F8Z|1|C+7F8Z|1|D = 0.43987EFI|1|A:7F8Z|1|G+7F8Z|1|H = 0.42987EFI|1|A:7F8Z|1|I+7F8Z|1|J = 0.42347EFI|1|A:7F8Z|1|E+7F8Z|1|F = 0.39857EFI|1|A:7EFI|1|A = 07EFI|1|A:7EFG|1|A = 0.10667EFG|1|A:7EFH|1|A = 0.72427EFG|1|A:7EIA|1|G+7EIA|1|H = 0.58347EFG|1|A:7EIA|1|A+7EIA|1|B = 0.53817EFG|1|A:7EIA|1|E+7EIA|1|F = 0.58747EFG|1|A:7EIA|1|C+7EIA|1|D = 0.47367EFG|1|A:7EI9|1|A+7EI9|1|B = 0.43077EFG|1|A:7F8Z|1|A+7F8Z|1|B = 0.43397EFG|1|A:7F8Z|1|C+7F8Z|1|D = 0.43937EFG|1|A:7F8Z|1|G+7F8Z|1|H = 0.44247EFG|1|A:7F8Z|1|I+7F8Z|1|J = 0.43997EFG|1|A:7F8Z|1|E+7F8Z|1|F = 0.39897EFG|1|A:7EFI|1|A = 0.10667EFG|1|A:7EFG|1|A = 07EFH|1|A7EIA|1|G+7EIA|1|H7EIA|1|A+7EIA|1|B7EIA|1|E+7EIA|1|F7EIA|1|C+7EIA|1|D7EI9|1|A+7EI9|1|B7F8Z|1|A+7F8Z|1|B7F8Z|1|C+7F8Z|1|D7F8Z|1|G+7F8Z|1|H7F8Z|1|I+7F8Z|1|J7F8Z|1|E+7F8Z|1|F7EFI|1|A7EFG|1|ADiscrepancy0.000.200.400.60

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