Equivalence class NR_3.0_89181.10 Current
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | #NTs | Date |
|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 9B1Y|1|U (rep) | 5S ribosomal RNA | 5S rRNA | Mycolicibacterium smegmatis | Bacteria | RF00001 | WT strain WT mycobacterial ribosome | Electron microscopy | 2.47 | 118 | 2025-03-26 |
| 2 | 9B24|1|U | 5S ribosomal RNA | 5S rRNA | Mycolicibacterium smegmatis | Bacteria | RF00001 | WT strain gidB mutant mycobacterial ribosome | Electron microscopy | 2.47 | 118 | 2025-03-26 |
| 3 | 8VPK|1|B | 5S ribosomal RNA | 5S ribosomal RNA | Mycolicibacterium smegmatis MC2 155 | Bacteria | RF00001 | Structure of Mycobacterium smegmatis 50S ribosomal subunit bound to HflX and erythromycin:50S-HflX-B-Ery | Electron microscopy | 2.63 | 118 | 2025-04-30 |
| 4 | 8FR8|1|B | 5S ribosomal RNA | 5S rRNA (118-MER) | Mycolicibacterium smegmatis MC2 155 | Bacteria | RF00001 | Structure of Mycobacterium smegmatis Rsh bound to a 70S translation initiation complex | Electron microscopy | 2.76 | 118 | 2023-05-17 |
| 5 | 8VR4|1|B | 5S ribosomal RNA | 5S ribosomal RNA | Mycolicibacterium smegmatis MC2 155 | Bacteria | RF00001 | Structure of Mycobacterium smegmatis 50S ribosomal subunit bound to HflX and erythromycin:50S-HflX-A-Ery | Electron microscopy | 2.8 | 118 | 2025-02-19 |
| 6 | 8WHX|1|B | 5S ribosomal RNA | 5S rRNA | Mycolicibacterium smegmatis MC2 155 | Bacteria | RF00001 | Cryo- EM structure of Mycobacterium smegmatis 70S ribosome and RafH. | Electron microscopy | 2.8 | 117 | 2024-02-28 |
| 7 | 8WHY|1|B | 5S ribosomal RNA | 5S rRNA | Mycolicibacterium smegmatis MC2 155 | Bacteria | RF00001 | Cryo- EM structure of Mycobacterium smegmatis 50S ribosomal subunit (body 1) of 70S ribosome and RafH. | Electron microscopy | 2.7 | 117 | 2024-02-28 |
| 8 | 8WI8|1|B | 5S ribosomal RNA | 5S rRNA | Mycolicibacterium smegmatis MC2 155 | Bacteria | RF00001 | Cryo- EM structure of Mycobacterium smegmatis 50S ribosomal subunit (body 1) of 70S ribosome, bS1 and RafH. | Electron microscopy | 2.7 | 118 | 2024-02-28 |
| 9 | 8V9L|1|B | 5S ribosomal RNA | 5S Ribosomal RNA | Mycolicibacterium smegmatis MC2 155 | Bacteria | RF00001 | Cryo-EM structure of the Mycobacterium smegmatis 70S ribosome in complex with hibernation factor Msmeg1130 (Balon) and MsmegEF-Tu(GDP) (Composite structure 6) | Electron microscopy | 3 | 118 | 2024-02-07 |
| 10 | 8VKI|1|B | 5S ribosomal RNA | 5S ribosomal RNA | Mycolicibacterium smegmatis MC2 155 | Bacteria | RF00001 | Structure of Mycobacterium smegmatis 50S ribosomal subunit bound to HflX:50S-HflX-C | Electron microscopy | 2.96 | 118 | 2025-02-19 |
Release history
| Release | 3.395 |
|---|---|
| Date | 2025-07-09 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|
Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.
| #S | View | PDB | Title | Method | Resolution | #NTs |
|---|---|---|---|---|---|---|
| 1 | 8VPK|1|B | Structure of Mycobacterium smegmatis 50S ribosomal subunit bound to HflX and erythromycin:50S-HflX-B-Ery | ELECTRON MICROSCOPY | 2.63 | 118 | |
| 2 | 9B1Y|1|U | WT strain WT mycobacterial ribosome | ELECTRON MICROSCOPY | 2.47 | 118 | |
| 3 | 9B24|1|U | WT strain gidB mutant mycobacterial ribosome | ELECTRON MICROSCOPY | 2.47 | 118 | |
| 4 | 8V9L|1|B | Cryo-EM structure of the Mycobacterium smegmatis 70S ribosome in complex with hibernation factor Msmeg1130 (Balon) and MsmegEF-Tu(GDP) (Composite structure 6) | ELECTRON MICROSCOPY | 3 | 118 | |
| 5 | 8WI8|1|B | Cryo- EM structure of Mycobacterium smegmatis 50S ribosomal subunit (body 1) of 70S ribosome, bS1 and RafH. | ELECTRON MICROSCOPY | 2.7 | 118 | |
| 6 | 8WHY|1|B | Cryo- EM structure of Mycobacterium smegmatis 50S ribosomal subunit (body 1) of 70S ribosome and RafH. | ELECTRON MICROSCOPY | 2.7 | 117 | |
| 7 | 8WHX|1|B | Cryo- EM structure of Mycobacterium smegmatis 70S ribosome and RafH. | ELECTRON MICROSCOPY | 2.8 | 117 | |
| 8 | 8VKI|1|B | Structure of Mycobacterium smegmatis 50S ribosomal subunit bound to HflX:50S-HflX-C | ELECTRON MICROSCOPY | 2.96 | 118 | |
| 9 | 8VR4|1|B | Structure of Mycobacterium smegmatis 50S ribosomal subunit bound to HflX and erythromycin:50S-HflX-A-Ery | ELECTRON MICROSCOPY | 2.8 | 118 | |
| 10 | 8FR8|1|B | Structure of Mycobacterium smegmatis Rsh bound to a 70S translation initiation complex | ELECTRON MICROSCOPY | 2.76 | 118 |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.
Coloring options: