Equivalence class NR_3.0_90476.5 Current
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | #NTs | Date |
|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 8G5Y|1|Pt (rep) | Transfer RNA | mRNA, P-site tRNA | Homo sapiens | Eukarya | RF00005 | mRNA decoding in human is kinetically and structurally distinct from bacteria (IC state) | Electron microscopy | 2.29 | 77 | 2023-04-19 |
| 2 | 9RPV|1|B5 | Transfer RNA | mRNA of the stalled 80S, P-site tRNA of the stalled 80S | Homo sapiens | Eukarya | RF00005 | Structure of the ZAK-bound human disome | Electron microscopy | 2.35 | 77 | 2025-12-10 |
| 3 | 8GLP|1|Pt | Transfer RNA | mRNA, P-site tRNA | Homo sapiens | Eukarya | RF00005 | mRNA decoding in human is kinetically and structurally distinct from bacteria (Consensus LSU focused refined structure) | Electron microscopy | 1.67 | 77 | 2023-04-19 |
| 4 | 8G60|1|Pt | Transfer RNA | mRNA, P-site tRNA | Homo sapiens | Eukarya | RF00005 | mRNA decoding in human is kinetically and structurally distinct from bacteria (CR state) | Electron microscopy | 2.54 | 77 | 2023-04-19 |
| 5 | 9RUC|1|Pt | Transfer RNA | Histone H2B mRNA, P site tRNA | Homo sapiens | Eukarya | RF00005 | WT-HEK 80S ribosome bound to H2B mRNA (WT-H2B) | Electron microscopy | 2.5 | 75 | 2026-05-13 |
| 6 | 8G6J|1|Pt | Transfer RNA | mRNA, P-site tRNA | Homo sapiens | Eukarya | RF00005 | mRNA decoding in human is kinetically and structurally distinct from bacteria (GA state 2) | Electron microscopy | 2.8 | 77 | 2023-04-19 |
| 7 | 9RU7|1|Pt | Transfer RNA | Kozak mRNA, P-site tRNA | Homo sapiens | Eukarya | RF00005 | WT-HEK 80S ribosome bound to Kozak mRNA (WT-Kozak) | Electron microscopy | 3 | 76 | 2026-05-13 |
Release history
| Release | 4.39 |
|---|---|
| Date | 2026-05-13 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
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Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
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Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.
| #S | View | PDB | Title | Method | Resolution | #NTs |
|---|---|---|---|---|---|---|
| 1 | 9RUC|1|Pt | WT-HEK 80S ribosome bound to H2B mRNA (WT-H2B) | ELECTRON MICROSCOPY | 2.5 | 75 | |
| 2 | 8G60|1|Pt | mRNA decoding in human is kinetically and structurally distinct from bacteria (CR state) | ELECTRON MICROSCOPY | 2.54 | 77 | |
| 3 | 8G5Y|1|Pt | mRNA decoding in human is kinetically and structurally distinct from bacteria (IC state) | ELECTRON MICROSCOPY | 2.29 | 77 | |
| 4 | 8GLP|1|Pt | mRNA decoding in human is kinetically and structurally distinct from bacteria (Consensus LSU focused refined structure) | ELECTRON MICROSCOPY | 1.67 | 77 | |
| 5 | 9RPV|1|B5 | Structure of the ZAK-bound human disome | ELECTRON MICROSCOPY | 2.35 | 77 | |
| 6 | 9RU7|1|Pt | WT-HEK 80S ribosome bound to Kozak mRNA (WT-Kozak) | ELECTRON MICROSCOPY | 3 | 76 | |
| 7 | 8G6J|1|Pt | mRNA decoding in human is kinetically and structurally distinct from bacteria (GA state 2) | ELECTRON MICROSCOPY | 2.8 | 77 |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.
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