Equivalence class NR_3.0_90633.23 Current
# | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
---|---|---|---|---|---|---|---|---|---|---|
1 | 8P2G|1|A (rep) | Large subunit ribosomal RNA | 23S ribosomal RNA | Staphylococcus aureus subsp. aureus NCTC 8325 | Bacteria | RF02541 | Staphylococcus aureus 70S ribosome with elongation factor G locked with fusidic acid cyclopentane with a tRNA in pe/E chimeric state | Electron microscopy | 2.02 | 2024-05-01 |
2 | 6S0Z|1|A | Large subunit ribosomal RNA | 23S ribosomal RNA | Staphylococcus aureus | Bacteria | RF02541 | Erythromycin Resistant Staphylococcus aureus 50S ribosome (delta R88 A89 uL22) in complex with erythromycin. | Electron microscopy | 2.3 | 2019-08-21 |
3 | 8P2F|1|A | Large subunit ribosomal RNA | 23S ribosomal RNA | Staphylococcus aureus subsp. aureus NCTC 8325 | Bacteria | RF02541 | Staphylococcus aureus 70S ribosome with elongation factor G locked with fusidic acid cyclopentane in post-translocational state | Electron microscopy | 2.44 | 2024-05-01 |
4 | 8P2H|1|A | Large subunit ribosomal RNA | 23S ribosomal RNA | Staphylococcus aureus subsp. aureus NCTC 8325 | Bacteria | RF02541 | Staphylococcus aureus 70S ribosome with elongation factor G locked with fusidic acid with a tRNA in pe/E chimeric state | Electron microscopy | 2.49 | 2024-05-01 |
5 | 8Y38|1|A | Large subunit ribosomal RNA | 23S ribosomal RNA | Staphylococcus aureus | Bacteria | RF02541 | Cryo-EM structure of Staphylococcus aureus 70S ribosome (strain 15B196) in complex with MCX-190. | Electron microscopy | 2.58 | 2024-07-24 |
6 | 8Y37|1|A | Large subunit ribosomal RNA | 23S ribosomal RNA | Staphylococcus aureus | Bacteria | RF02541 | Cryo-EM structure of Staphylococcus aureus (15B196) 50S ribosome in complex with MCX-190. | Electron microscopy | 2.53 | 2024-07-24 |
7 | 7ASM|1|A | Large subunit ribosomal RNA | 23S rRNA | Staphylococcus aureus | Bacteria | RF02541 | Staphylococcus aureus 50S after 30 minutes incubation at 37C | Electron microscopy | 2.48 | 2021-11-17 |
8 | 8Y36|1|A | Large subunit ribosomal RNA | 23S ribosomal RNA | Staphylococcus aureus | Bacteria | RF02541 | cryo-EM structure of Staphylococcus aureus(ATCC 29213) 50S ribosome in complex with MCX-190. | Electron microscopy | 2.65 | 2024-07-24 |
9 | 6HMA|1|A | Large subunit ribosomal RNA | 23S ribosomal RNA | Staphylococcus aureus | Bacteria | RF02541 | Improved model derived from cryo-EM map of Staphylococcus aureus large ribosomal subunit | Electron microscopy | 2.65 | 2018-11-14 |
10 | 6S0X|1|A | Large subunit ribosomal RNA | 23S ribosomal RNA | Staphylococcus aureus | Bacteria | RF02541 | Erythromycin Resistant Staphylococcus aureus 70S ribosome (delta R88 A89 uL22) in complex with erythromycin. | Electron microscopy | 2.42 | 2019-08-21 |
11 | 5NGM|1|AA | Large subunit ribosomal RNA | 23S Ribosomal RNA | Staphylococcus aureus | Bacteria | RF02541 | 2.9S structure of the 70S ribosome composing the S. aureus 100S complex | Electron microscopy | 2.9 | 2017-10-04 |
12 | 7ASP|1|Y | Large subunit ribosomal RNA | 23S rRNA | Staphylococcus aureus | Bacteria | RF02541 | Staphylococcus aureus 70S after 50 minutes incubation at 37C | Electron microscopy | 2.86 | 2021-11-17 |
13 | 7P48|1|A | Large subunit ribosomal RNA | 23S rRNA | Staphylococcus aureus | Bacteria | RF02541 | Staphylococcus aureus ribosome in complex with Sal(B) | Electron microscopy | 2.9 | 2022-02-02 |
14 | 7ASN|1|A | Large subunit ribosomal RNA | 23S | Staphylococcus aureus | Bacteria | RF02541 | Staphylococcus aureus 50S after 30 minutes incubation a 37C | Electron microscopy | 2.73 | 2021-11-17 |
15 | 7TTW|1|1 | Large subunit ribosomal RNA | 23S rRNA | Staphylococcus aureus | Bacteria | RF02541 | 50S ribosomal subunit from Staphylococcus aureus containing double mutation in uL3 imparting linezolid resistance | Electron microscopy | 2.9 | 2022-07-06 |
16 | 6WQN|1|1 | Large subunit ribosomal RNA | 23S rRNA | Staphylococcus aureus | Bacteria | RF02541 | Structure of the 50S subunit of the ribosome from Methicillin Resistant Staphylococcus aureus in complex with the antibiotic, contezolid | Electron microscopy | 2.9 | 2020-06-03 |
17 | 7TTU|1|1 | Large subunit ribosomal RNA | 23S rRNA | Staphylococcus aureus | Bacteria | RF02541 | 50S ribosomal subunit from Staphylococcus aureus (Strain ATCC43300) | Electron microscopy | 3 | 2022-07-06 |
Release history
Release | 3.345 | 3.346 | 3.347 | 3.348 | 3.349 | 3.350 | 3.351 | 3.352 | 3.353 | 3.354 | 3.355 | 3.356 | 3.357 | 3.358 | 3.359 | 3.360 | 3.361 | 3.362 | 3.363 | 3.364 | 3.365 | 3.366 | 3.367 | 3.368 | 3.369 | 3.370 | 3.371 | 3.372 | 3.373 |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Date | 2024-07-25 | 2024-07-31 | 2024-08-07 | 2024-08-14 | 2024-08-21 | 2024-08-28 | 2024-09-04 | 2024-09-11 | 2024-09-18 | 2024-09-25 | 2024-10-02 | 2024-10-09 | 2024-10-16 | 2024-10-23 | 2024-10-30 | 2024-11-06 | 2024-11-13 | 2024-11-20 | 2024-11-27 | 2024-12-04 | 2024-12-11 | 2024-12-18 | 2024-12-25 | 2025-01-01 | 2025-01-08 | 2025-01-15 | 2025-01-22 | 2025-01-29 | 2025-02-05 |
Parents
This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
---|
Children
This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
---|
Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.
#S | View | PDB | Title | Method | Resolution | Length |
---|---|---|---|---|---|---|
1 | 6S0X|1|A | Erythromycin Resistant Staphylococcus aureus 70S ribosome (delta R88 A89 uL22) in complex with erythromycin. | ELECTRON MICROSCOPY | 2.42 | 2905 | |
2 | 6S0Z|1|A | Erythromycin Resistant Staphylococcus aureus 50S ribosome (delta R88 A89 uL22) in complex with erythromycin. | ELECTRON MICROSCOPY | 2.3 | 2905 | |
3 | 8Y36|1|A | cryo-EM structure of Staphylococcus aureus(ATCC 29213) 50S ribosome in complex with MCX-190. | ELECTRON MICROSCOPY | 2.65 | 2921 | |
4 | 8Y37|1|A | Cryo-EM structure of Staphylococcus aureus (15B196) 50S ribosome in complex with MCX-190. | ELECTRON MICROSCOPY | 2.53 | 2921 | |
5 | 8Y38|1|A | Cryo-EM structure of Staphylococcus aureus 70S ribosome (strain 15B196) in complex with MCX-190. | ELECTRON MICROSCOPY | 2.58 | 2921 | |
6 | 7P48|1|A | Staphylococcus aureus ribosome in complex with Sal(B) | ELECTRON MICROSCOPY | 2.9 | 2661 | |
7 | 8P2F|1|A | Staphylococcus aureus 70S ribosome with elongation factor G locked with fusidic acid cyclopentane in post-translocational state | ELECTRON MICROSCOPY | 2.44 | 2837 | |
8 | 8P2G|1|A | Staphylococcus aureus 70S ribosome with elongation factor G locked with fusidic acid cyclopentane with a tRNA in pe/E chimeric state | ELECTRON MICROSCOPY | 2.02 | 2839 | |
9 | 8P2H|1|A | Staphylococcus aureus 70S ribosome with elongation factor G locked with fusidic acid with a tRNA in pe/E chimeric state | ELECTRON MICROSCOPY | 2.49 | 2839 | |
10 | 5NGM|1|AA | 2.9S structure of the 70S ribosome composing the S. aureus 100S complex | ELECTRON MICROSCOPY | 2.9 | 2905 | |
11 | 7ASM|1|A | Staphylococcus aureus 50S after 30 minutes incubation at 37C | ELECTRON MICROSCOPY | 2.48 | 2831 | |
12 | 6HMA|1|A | Improved model derived from cryo-EM map of Staphylococcus aureus large ribosomal subunit | ELECTRON MICROSCOPY | 2.65 | 2831 | |
13 | 7TTW|1|1 | 50S ribosomal subunit from Staphylococcus aureus containing double mutation in uL3 imparting linezolid resistance | ELECTRON MICROSCOPY | 2.9 | 2690 | |
14 | 7TTU|1|1 | 50S ribosomal subunit from Staphylococcus aureus (Strain ATCC43300) | ELECTRON MICROSCOPY | 3 | 2684 | |
15 | 6WQN|1|1 | Structure of the 50S subunit of the ribosome from Methicillin Resistant Staphylococcus aureus in complex with the antibiotic, contezolid | ELECTRON MICROSCOPY | 2.9 | 2687 | |
16 | 7ASP|1|Y | Staphylococcus aureus 70S after 50 minutes incubation at 37C | ELECTRON MICROSCOPY | 2.86 | 2723 | |
17 | 7ASN|1|A | Staphylococcus aureus 50S after 30 minutes incubation a 37C | ELECTRON MICROSCOPY | 2.73 | 2739 |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.
Coloring options: