Equivalence class NR_3.5_02457.2 Current
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | #NTs | Date |
|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 9J9H|1|B (rep) | 5S ribosomal RNA | 5S ribosomal RNA | Plasmodium falciparum 3D7 | Eukarya | RF00001 | High-resolution cryo-EM structure of the Plasmodium falciparum 80S ribosome bound to RACK1 and E-tRNA | Electron microscopy | 2.45 | 118 | 2025-06-04 |
| 2 | 9J9I|1|B | 5S ribosomal RNA | 5S ribosomal RNA | Plasmodium falciparum 3D7 | Eukarya | RF00001 | High-resolution cryo-EM structure of the Plasmodium falciparum 80S ribosome bound to E-tRNA | Electron microscopy | 2.46 | 118 | 2025-06-04 |
| 3 | 9BUQ|1|AB | 5S ribosomal RNA | 5S ribosomal RNA | Plasmodium falciparum 3D7 | Eukarya | RF00001 | Single particle cryoEM structure of the Pf80S ribosome in the POST state (nrt with P- and E-site tRNA) | Electron microscopy | 2.3 | 118 | 2025-05-28 |
| 4 | 9BUS|1|AB | 5S ribosomal RNA | 5S ribosomal RNA | Plasmodium falciparum 3D7 | Eukarya | RF00001 | Single particle CryoEM structure of the Pf80S ribosome in the unloaded state (nrt with E-site tRNA) | Electron microscopy | 2.4 | 118 | 2025-05-28 |
| 5 | 9BUP|1|AB | 5S ribosomal RNA | 5S ribosomal RNA | Plasmodium falciparum 3D7 | Eukarya | RF00001 | Single particle CryoEM structure of the Pf80S ribosome in non-rotated PRE state (nrt A-P-E) | Electron microscopy | 2.7 | 118 | 2025-05-28 |
| 6 | 3J79|1|B | 5S ribosomal RNA | 5S ribosomal RNA | Plasmodium falciparum | Eukarya | RF00001 | Cryo-EM structure of the Plasmodium falciparum 80S ribosome bound to the anti-protozoan drug emetine, large subunit | Electron microscopy | 3.2 | 118 | 2014-07-16 |
| 7 | 5UMD|1|B | 5S ribosomal RNA | 5S ribosomal RNA | Plasmodium falciparum | Eukarya | RF00001 | Structure of the Plasmodium falciparum 80S ribosome bound to the antimalarial drug mefloquine | Electron microscopy | 3.2 | 118 | 2017-03-01 |
| 8 | 9BUT|1|AB | 5S ribosomal RNA | 5S ribosomal RNA | Plasmodium falciparum 3D7 | Eukarya | RF00001 | Single particle CryoEM structure of the Pf80S ribosome in the rotated-2 PRE state (rt state with P and E-site tRNA) | Electron microscopy | 2.8 | 118 | 2025-05-28 |
| 9 | 9BUU|1|AB | 5S ribosomal RNA | 5S ribosomal RNA | Plasmodium falciparum 3D7 | Eukarya | RF00001 | Single particle CryoEM structure of the Pf80S ribosome in rotated state with E-site tRNA | Electron microscopy | 2.8 | 118 | 2025-05-28 |
Release history
| Release | 3.390 |
|---|---|
| Date | 2025-06-04 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
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Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
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Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.
| #S | View | PDB | Title | Method | Resolution | #NTs |
|---|---|---|---|---|---|---|
| 1 | 3J79|1|B | Cryo-EM structure of the Plasmodium falciparum 80S ribosome bound to the anti-protozoan drug emetine, large subunit | ELECTRON MICROSCOPY | 3.2 | 118 | |
| 2 | 5UMD|1|B | Structure of the Plasmodium falciparum 80S ribosome bound to the antimalarial drug mefloquine | ELECTRON MICROSCOPY | 3.2 | 118 | |
| 3 | 9BUP|1|AB | Single particle CryoEM structure of the Pf80S ribosome in non-rotated PRE state (nrt A-P-E) | ELECTRON MICROSCOPY | 2.7 | 118 | |
| 4 | 9BUQ|1|AB | Single particle cryoEM structure of the Pf80S ribosome in the POST state (nrt with P- and E-site tRNA) | ELECTRON MICROSCOPY | 2.3 | 118 | |
| 5 | 9BUS|1|AB | Single particle CryoEM structure of the Pf80S ribosome in the unloaded state (nrt with E-site tRNA) | ELECTRON MICROSCOPY | 2.4 | 118 | |
| 6 | 9J9I|1|B | High-resolution cryo-EM structure of the Plasmodium falciparum 80S ribosome bound to E-tRNA | ELECTRON MICROSCOPY | 2.46 | 118 | |
| 7 | 9J9H|1|B | High-resolution cryo-EM structure of the Plasmodium falciparum 80S ribosome bound to RACK1 and E-tRNA | ELECTRON MICROSCOPY | 2.45 | 118 | |
| 8 | 9BUT|1|AB | Single particle CryoEM structure of the Pf80S ribosome in the rotated-2 PRE state (rt state with P and E-site tRNA) | ELECTRON MICROSCOPY | 2.8 | 118 | |
| 9 | 9BUU|1|AB | Single particle CryoEM structure of the Pf80S ribosome in rotated state with E-site tRNA | ELECTRON MICROSCOPY | 2.8 | 118 |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.
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