#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodRes. Å#NTsDate
18P9A|1|sR (rep)Small subunit ribosomal RNA16S ribosomal RNASaccharomyces cerevisiaeEukaryaRF0196080S yeast ribosome in complex with MethyllissoclimideX-ray diffraction2.917832024-11-27
28P9A|1|ASmall subunit ribosomal RNA16S ribosomal RNASaccharomyces cerevisiaeEukaryaRF0196080S yeast ribosome in complex with MethyllissoclimideX-ray diffraction2.917412024-11-27
35TBW|1|sRSmall subunit ribosomal RNA18S ribosomal RNASaccharomyces cerevisiaeEukaryaRF01960Crystal structure of chlorolissoclimide bound to the yeast 80S ribosomeX-ray diffraction317832017-07-26
44V88|1|A6Small subunit ribosomal RNA18S rRNASaccharomyces cerevisiaeEukaryaRF01960The structure of the eukaryotic ribosome at 3.0 A resolution.X-ray diffraction317952014-07-09
58PNN|1|sRSmall subunit ribosomal RNA16S ribosomal RNASaccharomyces cerevisiaeEukaryaRF0196080S yeast ribosome in complex with BromolissoclimideX-ray diffraction2.917832025-05-28
64V88|1|A2Small subunit ribosomal RNA18S RIBOSOMAL RNASaccharomyces cerevisiaeEukaryaRF01960The structure of the eukaryotic ribosome at 3.0 A resolution.X-ray diffraction317812014-07-09
75TBW|1|ASmall subunit ribosomal RNA18S ribosomal RNASaccharomyces cerevisiaeEukaryaRF01960Crystal structure of chlorolissoclimide bound to the yeast 80S ribosomeX-ray diffraction317812017-07-26
88P4V|1|sRSmall subunit ribosomal RNA18S ribosomal RNASaccharomyces cerevisiaeEukaryaRF0196080S yeast ribosome in complex with HaterumaimideQX-ray diffraction3.1617832024-10-16
98PNN|1|ASmall subunit ribosomal RNA16S ribosomal RNASaccharomyces cerevisiaeEukaryaRF0196080S yeast ribosome in complex with BromolissoclimideX-ray diffraction2.917222025-05-28
108P4V|1|ASmall subunit ribosomal RNA18S ribosomal RNASaccharomyces cerevisiaeEukaryaRF0196080S yeast ribosome in complex with HaterumaimideQX-ray diffraction3.1617812024-10-16
118P85|1|sRSmall subunit ribosomal RNA16S ribosomal RNASaccharomyces cerevisiaeEukaryaRF0196080S yeast ribosome in complex with FluorolissoclimideX-ray diffraction2.917832025-06-25
127OSA|1|18SSmall subunit ribosomal RNA18S rRNASaccharomyces cerevisiaeEukaryaRF01960Pre-translocation complex of 80 S.cerevisiae ribosome with eEF2 and ligandsX-ray diffraction317172021-12-08
138P85|1|ASmall subunit ribosomal RNA16S ribosomal RNASaccharomyces cerevisiaeEukaryaRF0196080S yeast ribosome in complex with FluorolissoclimideX-ray diffraction2.917352025-06-25
146HHQ|1|sRSmall subunit ribosomal RNA18S ribosomal RNASaccharomyces cerevisiaeEukaryaRF01960Crystal structure of compound C45 bound to the yeast 80S ribosomeX-ray diffraction3.117832019-02-20
155OBM|1|6Small subunit ribosomal RNA18S ribosomal RNASaccharomyces cerevisiaeEukaryaRF01960Crystal structure of Gentamicin bound to the yeast 80S ribosomeX-ray diffraction3.417392017-12-13
165I4L|1|6Small subunit ribosomal RNA18S ribosomal RNASaccharomyces cerevisiaeEukaryaRF01960Crystal structure of Amicoumacin A bound to the yeast 80S ribosomeX-ray diffraction3.117952016-06-22
175MEI|1|6Small subunit ribosomal RNA18S ribosomal RNASaccharomyces cerevisiaeEukaryaRF01960Crystal structure of Agelastatin A bound to the 80S ribosomeX-ray diffraction3.517832017-06-28
185LYB|1|6Small subunit ribosomal RNA18S rRNASaccharomyces cerevisiaeEukaryaRF01960Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCPmnX-ray diffraction3.2517952016-11-23
195I4L|1|2Small subunit ribosomal RNA18S ribosomal RNASaccharomyces cerevisiaeEukaryaRF01960Crystal structure of Amicoumacin A bound to the yeast 80S ribosomeX-ray diffraction3.117812016-06-22
205OBM|1|2Small subunit ribosomal RNA18S ribosomal RNASaccharomyces cerevisiaeEukaryaRF01960Crystal structure of Gentamicin bound to the yeast 80S ribosomeX-ray diffraction3.417122017-12-13
215MEI|1|ASmall subunit ribosomal RNA18S ribosomal RNASaccharomyces cerevisiaeEukaryaRF01960Crystal structure of Agelastatin A bound to the 80S ribosomeX-ray diffraction3.517812017-06-28
227OSM|1|18SSmall subunit ribosomal RNA18S rRNASaccharomyces cerevisiaeEukaryaRF01960Intermediate translocation complex of 80 S.cerevisiae ribosome with eEF2 and ligandsX-ray diffraction317322021-12-08
235ON6|1|6Small subunit ribosomal RNA18S ribosomal RNASaccharomyces cerevisiaeEukaryaRF01960Crystal structure of haemanthamine bound to the 80S ribosomeX-ray diffraction3.117832018-02-28
246HHQ|1|ASmall subunit ribosomal RNA18S ribosomal RNASaccharomyces cerevisiaeEukaryaRF01960Crystal structure of compound C45 bound to the yeast 80S ribosomeX-ray diffraction3.117812019-02-20
255LYB|1|2Small subunit ribosomal RNA18S rRNASaccharomyces cerevisiaeEukaryaRF01960Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCPmnX-ray diffraction3.2517812016-11-23
265ON6|1|ASmall subunit ribosomal RNA18S ribosomal RNASaccharomyces cerevisiaeEukaryaRF01960Crystal structure of haemanthamine bound to the 80S ribosomeX-ray diffraction3.117812018-02-28
275NDV|1|6Small subunit ribosomal RNA18S ribosomal RNASaccharomyces cerevisiaeEukaryaRF01960Crystal structure of Paromomycin bound to the yeast 80S ribosomeX-ray diffraction3.316832017-12-13
285NDV|1|2Small subunit ribosomal RNA18S ribosomal RNASaccharomyces cerevisiaeEukaryaRF01960Crystal structure of Paromomycin bound to the yeast 80S ribosomeX-ray diffraction3.317122017-12-13
295FCJ|1|6Small subunit ribosomal RNA18S ribosomal RNASaccharomyces cerevisiaeEukaryaRF01960Structure of the anisomycin-containing uL3 W255C mutant 80S yeast ribosomeX-ray diffraction3.117952016-05-11
305FCJ|1|2Small subunit ribosomal RNA18S ribosomal RNASaccharomyces cerevisiaeEukaryaRF01960Structure of the anisomycin-containing uL3 W255C mutant 80S yeast ribosomeX-ray diffraction3.117812016-05-11
315TGM|1|6Small subunit ribosomal RNA18S ribosomal RNASaccharomyces cerevisiaeEukaryaRF01960Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCA-ProX-ray diffraction3.517952017-01-18
325TGM|1|2Small subunit ribosomal RNA18S ribosomal RNASaccharomyces cerevisiaeEukaryaRF01960Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCA-ProX-ray diffraction3.517812017-01-18
335DAT|1|6Small subunit ribosomal RNA18S ribosomal RNASaccharomyces cerevisiaeEukaryaRF01960Complex of yeast 80S ribosome with hypusine-containing eIF5AX-ray diffraction3.1517952016-08-31
345TGA|1|6Small subunit ribosomal RNA18S ribosomal RNASaccharomyces cerevisiaeEukaryaRF01960Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCA-ProX-ray diffraction3.317952016-11-23
355DGE|1|6Small subunit ribosomal RNA18S ribosomal RNASaccharomyces cerevisiaeEukaryaRF01960Coping with proline stalling: structural basis of hypusine-induced protein synthesis by the eukaryotic ribosomeX-ray diffraction3.4517952017-01-25
365DGV|1|6Small subunit ribosomal RNASaccharomyces cerevisiae S288c RDN37-1 miscRNASaccharomyces cerevisiaeEukaryaRF01960Complex of yeast 80S ribosome with hypusine-containing/non-modified eIF5A and/or a peptidyl-tRNA analogX-ray diffraction3.117952016-12-14
375DGF|1|6Small subunit ribosomal RNA18S ribosomal RNASaccharomyces cerevisiaeEukaryaRF01960Complex of yeast 80S ribosome with hypusine-containing/non-modified eIF5A and/or a peptidyl-tRNA analogX-ray diffraction3.317952016-12-14
385DC3|1|6Small subunit ribosomal RNA18S ribosomal RNASaccharomyces cerevisiaeEukaryaRF01960Complex of yeast 80S ribosome with non-modified eIF5AX-ray diffraction3.2517952016-06-01
395DAT|1|2Small subunit ribosomal RNA18S ribosomal RNASaccharomyces cerevisiaeEukaryaRF01960Complex of yeast 80S ribosome with hypusine-containing eIF5AX-ray diffraction3.1517812016-08-31
405TGA|1|2Small subunit ribosomal RNA18S ribosomal RNASaccharomyces cerevisiaeEukaryaRF01960Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCA-ProX-ray diffraction3.317812016-11-23
415DGV|1|2Small subunit ribosomal RNASaccharomyces cerevisiae S288c RDN37-1 miscRNASaccharomyces cerevisiaeEukaryaRF01960Complex of yeast 80S ribosome with hypusine-containing/non-modified eIF5A and/or a peptidyl-tRNA analogX-ray diffraction3.117812016-12-14
425DGE|1|2Small subunit ribosomal RNA18S ribosomal RNASaccharomyces cerevisiaeEukaryaRF01960Coping with proline stalling: structural basis of hypusine-induced protein synthesis by the eukaryotic ribosomeX-ray diffraction3.4517812017-01-25
435FCI|1|6Small subunit ribosomal RNA18S ribosomal RNASaccharomyces cerevisiaeEukaryaRF01960Structure of the vacant uL3 W255C mutant 80S yeast ribosomeX-ray diffraction3.417952016-05-11
445DGF|1|2Small subunit ribosomal RNA18S ribosomal RNASaccharomyces cerevisiaeEukaryaRF01960Complex of yeast 80S ribosome with hypusine-containing/non-modified eIF5A and/or a peptidyl-tRNA analogX-ray diffraction3.317812016-12-14
455DC3|1|2Small subunit ribosomal RNA18S ribosomal RNASaccharomyces cerevisiaeEukaryaRF01960Complex of yeast 80S ribosome with non-modified eIF5AX-ray diffraction3.2517812016-06-01
465FCI|1|2Small subunit ribosomal RNA18S ribosomal RNASaccharomyces cerevisiaeEukaryaRF01960Structure of the vacant uL3 W255C mutant 80S yeast ribosomeX-ray diffraction3.417812016-05-11
478T2Y|1|B5Small subunit ribosomal RNA18S rRNASaccharomyces cerevisiaeEukaryaRF01960Hypomethylated yeast 80S bound with cycloheximide, P-site tRNA, and A-site tRNA, messenger RNA, PREElectron microscopy2.217822024-12-11
488CCS|1|cSmall subunit ribosomal RNA18S ribosomal RNASaccharomyces cerevisiaeEukaryaRF0196080S S. cerevisiae ribosome with ligands in hybrid-1 pre-translocation (PRE-H1) complexElectron microscopy1.9716042023-09-20
498EVP|1|B5Small subunit ribosomal RNA18S rRNASaccharomyces cerevisiaeEukaryaRF01960Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), Structure IElectron microscopy2.3817822023-09-06
508CDR|1|cSmall subunit ribosomal RNA18S ribosomal RNASaccharomyces cerevisiaeEukaryaRF01960Translocation intermediate 2 (TI-2) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarinElectron microscopy2.0416082023-09-20
518CEH|1|cSmall subunit ribosomal RNA18S ribosomal RNASaccharomyces cerevisiaeEukaryaRF01960Translocation intermediate 4 (TI-4) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarinElectron microscopy2.0516082023-09-20
527ZW0|1|2Small subunit ribosomal RNA18S ribosomal RNA (RDN18-1)Saccharomyces cerevisiae W303EukaryaRF01960FAP-80S Complex - Rotated stateElectron microscopy2.417652022-10-05
538T2Z|1|B5Small subunit ribosomal RNA18S rRNASaccharomyces cerevisiaeEukaryaRF01960Hypomethylated yeast 80S bound with cycloheximide, P-site tRNA, and A-site tRNA, messenger RNA, POSTElectron microscopy2.417572024-12-11
548EWC|1|B5Small subunit ribosomal RNA18S rRNASaccharomyces cerevisiaeEukaryaRF01960Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), Structure IIElectron microscopy2.4517822023-09-06
558T2X|1|B5Small subunit ribosomal RNA18S rRNASaccharomyces cerevisiaeEukaryaRF01960Hypomethylated yeast 80S bound with cycloheximide, P-site tRNA, A-site tRNA, messenger RNA and eIF5A, PREElectron microscopy2.4617822024-12-11
568BN3|1|2Small subunit ribosomal RNA18S ribosomal RNASaccharomyces cerevisiaeEukaryaRF01960Yeast 80S, ES7s delta, eIF5A, Stm1 containingElectron microscopy2.417372024-01-10
578EUB|1|B5Small subunit ribosomal RNA18S rRNASaccharomyces cerevisiaeEukaryaRF01960Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2 and GDP, Structure IElectron microscopy2.5217822023-09-06
587ZUX|1|2Small subunit ribosomal RNA18S ribosomal RNASaccharomyces cerevisiaeEukaryaRF01960Collided ribosome in a disome unit from S. cerevisiaeElectron microscopy2.517692023-02-22
598ZHC|1|S2Small subunit ribosomal RNAchain 2 18S rRNA (1799-MER)Saccharomyces cerevisiae S288CEukaryaRF01960pre-frameshift complex of yeast 80S ribosome with eRF1 and mRNA of WNVElectron microscopy2.317712025-05-21
608CGN|1|cSmall subunit ribosomal RNA18S ribosomal RNASaccharomyces cerevisiaeEukaryaRF01960Non-rotated 80S S. cerevisiae ribosome with ligandsElectron microscopy2.2816242023-09-20
617MPJ|1|B5Small subunit ribosomal RNA18S rRNASaccharomyces cerevisiaeEukaryaRF01960Stm1 bound vacant 80S structure isolated from nop1-D243AElectron microscopy2.717812022-05-11
628EVQ|1|B5Small subunit ribosomal RNA18S rRNASaccharomyces cerevisiaeEukaryaRF01960Hypopseudouridylated Ribosome bound with TSV IRES, eEF2, GDP, and sordarin, Structure IElectron microscopy2.7217822023-09-06
636LQP|1|SA+ 6LQP|1|5A+ 6LQP|1|3ASmall subunit ribosomal RNA + U3 small nucleolar RNA18S pre-rRNA, 5' ETS, U3 snoRNASaccharomyces cerevisiaeEukaryaRF01960 + RF01846Cryo-EM structure of 90S small subunit preribosomes in transition states (State A)Electron microscopy3.220232020-09-16
646T4Q|1|C2Small subunit ribosomal RNA18S rRNASaccharomyces cerevisiaeEukaryaRF01960Structure of yeast 80S ribosome stalled on the CGA-CCG inhibitory codon combination.Electron microscopy2.617712019-12-25
658CIV|1|cSmall subunit ribosomal RNA18S ribosomal RNASaccharomyces cerevisiaeEukaryaRF01960Translocation intermediate 5 (TI-5) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarinElectron microscopy2.4716222023-09-20
668ZHB|1|S2Small subunit ribosomal RNAchain 2 18S rRNA (1799-MER)Saccharomyces cerevisiae S288CEukaryaRF0196080S ribosome with A/A P/E tRNA and mRNA of WNVElectron microscopy2.617712025-05-21
678EWB|1|B5Small subunit ribosomal RNA18S rRNASaccharomyces cerevisiaeEukaryaRF01960Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2 and GDP, Structure IIIElectron microscopy2.8717822023-09-06
688T30|1|B5Small subunit ribosomal RNA18S rRNASaccharomyces cerevisiaeEukaryaRF01960Hypomethylated yeast 80S bound with cycloheximide, unmodified U2921, mid rotatedElectron microscopy2.8817822024-12-11
696WOO|1|2Small subunit ribosomal RNA18S ribosomal RNASaccharomyces cerevisiaeEukaryaRF01960CryoEM structure of yeast 80S ribosome with Met-tRNAiMet, eIF5B, and GDPElectron microscopy2.917802020-09-23
704U4R|1|6Small subunit ribosomal RNA18S ribosomal RNASaccharomyces cerevisiaeEukaryaRF01960Crystal structure of Lactimidomycin bound to the yeast 80S ribosomeX-ray diffraction2.817952014-10-22
718T3A|1|B5Small subunit ribosomal RNA18S rRNASaccharomyces cerevisiaeEukaryaRF01960Hypomethylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, sordarin, and hibernating factor Los2Electron microscopy2.8617572024-12-11
728CG8|1|cSmall subunit ribosomal RNA18S ribosomal RNASaccharomyces cerevisiaeEukaryaRF01960Translocation intermediate 3 (TI-3) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarinElectron microscopy2.5716082023-09-20
738ZH3|1|S2Small subunit ribosomal RNAchain 2 18S rRNA (1771-MER)Saccharomyces cerevisiae S288CEukaryaRF0196080S ribosome with A/P-P/E tRNA and mRNA of WNVElectron microscopy2.717712025-05-21
749F9S|1|S1Small subunit ribosomal RNASaccharomyces cerevisiae S288C 18S ribosomal RNA (RDN18-1)Saccharomyces cerevisiaeEukaryaRF01960Yeast SDD1 Disome with Mbf1Electron microscopy2.917712024-12-04
756TB3|1|2Small subunit ribosomal RNASaccharomyces cerevisiae S288C 18S ribosomal RNA (RDN18-1), rRNASaccharomyces cerevisiaeEukaryaRF01960yeast 80S ribosome in complex with the Not5 subunit of the CCR4-NOT complexElectron microscopy2.817712020-04-22
766SNT|1|2Small subunit ribosomal RNASaccharomyces cerevisiae S288C 18S ribosomal RNA (RDN18-1), rRNASaccharomyces cerevisiaeEukaryaRF01960Yeast 80S ribosome stalled on SDD1 mRNA.Electron microscopy2.817712020-03-04
779F9S|1|R1Small subunit ribosomal RNASaccharomyces cerevisiae S288C 18S ribosomal RNA (RDN18-1)Saccharomyces cerevisiaeEukaryaRF01960Yeast SDD1 Disome with Mbf1Electron microscopy2.917582024-12-04
786KE6|1|SA+ 6KE6|1|5A+ 6KE6|1|3ASmall subunit ribosomal RNA + U3 small nucleolar RNA18S rRNA, 5' ETS, U3 snoRNASaccharomyces cerevisiaeEukaryaRF01960 + RF018463.4 angstrom cryo-EM structure of yeast 90S small subunit preribosomeElectron microscopy3.420072020-08-05
794U3U|1|6Small subunit ribosomal RNA18S ribosomal RNASaccharomyces cerevisiaeEukaryaRF01960Crystal structure of Cycloheximide bound to the yeast 80S ribosomeX-ray diffraction2.917952014-10-22
808T3D|1|B5Small subunit ribosomal RNA18S rRNASaccharomyces cerevisiaeEukaryaRF01960Hypomethylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, and sordarin, Structure IIIElectron microscopy2.9517572024-12-11
818ZGR|1|S2Small subunit ribosomal RNAchain 2 18S rRNA (1800-MER)Saccharomyces cerevisiae S288CEukaryaRF0196080S ribosome with A/A tRNA and mRNA of WNVElectron microscopy2.717712025-05-21
824U4R|1|2Small subunit ribosomal RNA18S ribosomal RNASaccharomyces cerevisiaeEukaryaRF01960Crystal structure of Lactimidomycin bound to the yeast 80S ribosomeX-ray diffraction2.817502014-10-22
838K82|1|C2Small subunit ribosomal RNA18S rRNASaccharomyces cerevisiaeEukaryaRF01960Cryo-EM structure of the yeast 80S ribosome with tigecycline, Not5 and P-site tRNAElectron microscopy317712024-07-10
847A1G|1|2Small subunit ribosomal RNA18S ribosomal RNASaccharomyces cerevisiaeEukaryaRF01960Structure of a crosslinked yeast ABCE1-bound 43S pre-initiation complexElectron microscopy317712020-10-14
856ZVI|1|hSmall subunit ribosomal RNA18S rRNASaccharomyces cerevisiaeEukaryaRF01960Mbf1-ribosome complexElectron microscopy317582020-09-09
867N8B|1|B5Small subunit ribosomal RNA18S RIBOSOMAL RNASaccharomyces cerevisiaeEukaryaRF01960Cycloheximide bound vacant 80S structure isolated from cbf5-D95AElectron microscopy3.0517832022-05-11
877MPI|1|B5Small subunit ribosomal RNA18S rRNASaccharomyces cerevisiaeEukaryaRF01960Stm1 bound vacant 80S structure isolated from cbf5-D95AElectron microscopy3.0517812022-05-11
888CF5|1|cSmall subunit ribosomal RNA18S ribosomal RNASaccharomyces cerevisiaeEukaryaRF01960Translocation intermediate 1 (TI-1) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarinElectron microscopy2.7116042023-09-20
898CDL|1|cSmall subunit ribosomal RNA18S ribosomal RNASaccharomyces cerevisiaeEukaryaRF0196080S S. cerevisiae ribosome with ligands in hybrid-2 pre-translocation (PRE-H2) complexElectron microscopy2.7216042023-09-20
908CAH|1|2Small subunit ribosomal RNA18S ribosomal RNASaccharomyces cerevisiae W303EukaryaRF01960Cryo-EM structure of native Otu2-bound ubiquitinated 43S pre-initiation complexElectron microscopy317452023-05-24
918T3E|1|B5Small subunit ribosomal RNA18S rRNASaccharomyces cerevisiaeEukaryaRF01960Hypomethylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, and sordarin, Structure IVElectron microscopy3.0417572024-12-11
924U3U|1|2Small subunit ribosomal RNA18S ribosomal RNASaccharomyces cerevisiaeEukaryaRF01960Crystal structure of Cycloheximide bound to the yeast 80S ribosomeX-ray diffraction2.917502014-10-22
938ZGY|1|S2Small subunit ribosomal RNAchain 2 18S rRNA (1799-MER)Saccharomyces cerevisiae S288CEukaryaRF0196080S ribosome with P/E tRNA and mRNA of WNVElectron microscopy2.817712025-05-21
948T3B|1|B5Small subunit ribosomal RNA18S rRNASaccharomyces cerevisiaeEukaryaRF01960Hypomethylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, and sordarin, Structure IElectron microscopy3.0817572024-12-11
954U3M|1|6Small subunit ribosomal RNA18S rRNASaccharomyces cerevisiaeEukaryaRF01960Crystal structure of Anisomycin bound to the yeast 80S ribosomeX-ray diffraction317952014-10-22
968T3F|1|B5Small subunit ribosomal RNA18S rRNASaccharomyces cerevisiaeEukaryaRF01960Hypomethylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, and sordarin, Structure VElectron microscopy3.0917572024-12-11
974U4Q|1|6Small subunit ribosomal RNA18S ribosomal RNASaccharomyces cerevisiaeEukaryaRF01960Crystal structure of Homoharringtonine bound to the yeast 80S ribosomeX-ray diffraction317952014-10-22
984U4U|1|6Small subunit ribosomal RNA18S ribosomal RNASaccharomyces cerevisiaeEukaryaRF01960Crystal structure of Lycorine bound to the yeast 80S ribosomeX-ray diffraction317952014-10-22
994U52|1|6Small subunit ribosomal RNA18S ribosomal RNASaccharomyces cerevisiaeEukaryaRF01960Crystal structure of Nagilactone C bound to the yeast 80S ribosomeX-ray diffraction317952014-10-22
1008Z70|1|2Small subunit ribosomal RNA18S rRNASaccharomyces cerevisiae S288CEukaryaRF01960State 1 (S1) of yeast 80S ribosome bound to 2 tRNAs during mRNA decodingElectron microscopy3.217712024-12-11
1014U3M|1|2Small subunit ribosomal RNA18S rRNASaccharomyces cerevisiaeEukaryaRF01960Crystal structure of Anisomycin bound to the yeast 80S ribosomeX-ray diffraction317502014-10-22
1028UT0|1|2Small subunit ribosomal RNA18S rRNASaccharomyces cerevisiaeEukaryaRF01960Eukaryotic 80S ribosome with Reh1, eIF5A and A/P site tRNAElectron microscopy3.2217712024-11-06
1037RR5|1|C2Small subunit ribosomal RNA18S rRNASaccharomyces cerevisiaeEukaryaRF01960Structure of ribosomal complex bound with Rbg1/Tma46Electron microscopy3.2317712021-11-10
1044U6F|1|6Small subunit ribosomal RNA18S ribosomal RNASaccharomyces cerevisiaeEukaryaRF01960Crystal structure of T-2 toxin bound to the yeast 80S ribosomeX-ray diffraction3.117952014-10-22
1058C01|1|2Small subunit ribosomal RNA18S rRNA precursorSaccharomyces cerevisiaeEukaryaRF01960Enp1TAP_A population of yeast small ribosomal subunit precursorsElectron microscopy2.715452022-12-28
1064U4N|1|6Small subunit ribosomal RNA18S ribosomal RNASaccharomyces cerevisiaeEukaryaRF01960Crystal structure of Edeine bound to the yeast 80S ribosomeX-ray diffraction3.117952014-10-22
1074U52|1|2Small subunit ribosomal RNA18S ribosomal RNASaccharomyces cerevisiaeEukaryaRF01960Crystal structure of Nagilactone C bound to the yeast 80S ribosomeX-ray diffraction317502014-10-22
1084U4U|1|2Small subunit ribosomal RNA18S ribosomal RNASaccharomyces cerevisiaeEukaryaRF01960Crystal structure of Lycorine bound to the yeast 80S ribosomeX-ray diffraction317502014-10-22
1094U4Q|1|2Small subunit ribosomal RNA18S ribosomal RNASaccharomyces cerevisiaeEukaryaRF01960Crystal structure of Homoharringtonine bound to the yeast 80S ribosomeX-ray diffraction317502014-10-22
1106Q8Y|1|2Small subunit ribosomal RNA18S ribosomal RNASaccharomyces cerevisiaeEukaryaRF01960Cryo-EM structure of the mRNA translating and degrading yeast 80S ribosome-Xrn1 nuclease complexElectron microscopy3.117672019-03-13
1114U6F|1|2Small subunit ribosomal RNA18S ribosomal RNASaccharomyces cerevisiaeEukaryaRF01960Crystal structure of T-2 toxin bound to the yeast 80S ribosomeX-ray diffraction3.117812014-10-22
1124U4Z|1|6Small subunit ribosomal RNA18S ribosomal RNASaccharomyces cerevisiaeEukaryaRF01960Crystal structure of Phyllanthoside bound to the yeast 80S ribosomeX-ray diffraction3.117952014-10-22
1137B7D|1|2Small subunit ribosomal RNA18S rRNASaccharomyces cerevisiae S288CEukaryaRF01960Yeast 80S ribosome bound to eEF3 and A/A- and P/P-tRNAsElectron microscopy3.317712021-03-10
1148CAS|1|2Small subunit ribosomal RNA18S ribosomal RNASaccharomyces cerevisiae W303EukaryaRF01960Cryo-EM structure of native Otu2-bound ubiquitinated 48S initiation complex (partial)Electron microscopy3.317632023-05-24
1154U4Y|1|6Small subunit ribosomal RNA18S ribosomal RNASaccharomyces cerevisiaeEukaryaRF01960Crystal structure of Pactamycin bound to the yeast 80S ribosomeX-ray diffraction3.217952014-10-22
1164U3N|1|6Small subunit ribosomal RNA18S ribosomal RNASaccharomyces cerevisiaeEukaryaRF01960Crystal structure of CCA trinucleotide bound to the yeast 80S ribosomeX-ray diffraction3.217952014-10-22
1176XIR|1|2Small subunit ribosomal RNA18S ribosomal RNASaccharomyces cerevisiaeEukaryaRF01960Cryo-EM Structure of K63 Ubiquitinated Yeast Translocating Ribosome under Oxidative StressElectron microscopy3.217082020-08-26
1186SV4|1|2bSmall subunit ribosomal RNA18S rRNASaccharomyces cerevisiaeEukaryaRF01960The cryo-EM structure of SDD1-stalled collided trisome.Electron microscopy3.317582020-03-04
1196SV4|1|2cSmall subunit ribosomal RNA18S rRNASaccharomyces cerevisiaeEukaryaRF01960The cryo-EM structure of SDD1-stalled collided trisome.Electron microscopy3.317582020-03-04
1208K2D|1|C2Small subunit ribosomal RNA18S rRNASaccharomyces cerevisiaeEukaryaRF01960Cryo-EM structure of the yeast 80S ribosome with tigecycline, eEF2, Stm1 and eIF5AElectron microscopy3.217002024-07-10
1214U55|1|6Small subunit ribosomal RNA18S ribosomal RNASaccharomyces cerevisiaeEukaryaRF01960Crystal structure of Cryptopleurine bound to the yeast 80S ribosomeX-ray diffraction3.217952014-10-22
1226T7T|1|C2Small subunit ribosomal RNA18S rRNASaccharomyces cerevisiaeEukaryaRF01960Structure of yeast 80S ribosome stalled on poly(A) tract.Electron microscopy3.117712019-12-25
1234U4Z|1|2Small subunit ribosomal RNA18S ribosomal RNASaccharomyces cerevisiaeEukaryaRF01960Crystal structure of Phyllanthoside bound to the yeast 80S ribosomeX-ray diffraction3.117502014-10-22
1245M1J|1|22Small subunit ribosomal RNA18S ribosomal RNASaccharomyces cerevisiaeEukaryaRF01960Nonstop ribosomal complex bound with Dom34 and Hbs1Electron microscopy3.317812017-01-18
1254U4N|1|2Small subunit ribosomal RNA18S ribosomal RNASaccharomyces cerevisiaeEukaryaRF01960Crystal structure of Edeine bound to the yeast 80S ribosomeX-ray diffraction3.117502014-10-22
1268EVT|1|B5Small subunit ribosomal RNA18S rRNASaccharomyces cerevisiaeEukaryaRF01960Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES) refined against a composite mapElectron microscopy2.211732023-09-06
1274U50|1|6Small subunit ribosomal RNA18S ribosomal RNASaccharomyces cerevisiaeEukaryaRF01960Crystal structure of Verrucarin bound to the yeast 80S ribosomeX-ray diffraction3.217952014-10-22
1286T7I|1|C2Small subunit ribosomal RNA18S ribosomal RNASaccharomyces cerevisiaeEukaryaRF01960Structure of yeast 80S ribosome stalled on the CGA-CGA inhibitory codon combination.Electron microscopy3.217712019-12-25
1294U51|1|6Small subunit ribosomal RNA18S ribosomal RNASaccharomyces cerevisiaeEukaryaRF01960Crystal structure of Narciclasine bound to the yeast 80S ribosomeX-ray diffraction3.217952014-10-22
1308XU8|1|2Small subunit ribosomal RNA18S rRNASaccharomyces cerevisiae S288CEukaryaRF01960State 2c(S2c) of yeast 80S ribosome bound to compact eEF2 and 2 tRNAs during peptidyl transferationElectron microscopy3.417672024-12-11
1314U3N|1|2Small subunit ribosomal RNA18S ribosomal RNASaccharomyces cerevisiaeEukaryaRF01960Crystal structure of CCA trinucleotide bound to the yeast 80S ribosomeX-ray diffraction3.217502014-10-22
1328CKU|1|cSmall subunit ribosomal RNA18S ribosomal RNASaccharomyces cerevisiaeEukaryaRF01960Translocation intermediate 1 (TI-1*) of 80S S. cerevisiae ribosome with ligands and eEF2 in the absence of sordarinElectron microscopy3.1116042023-09-20
1337ZPQ|1|2Small subunit ribosomal RNA18S ribosomal RNASaccharomyces cerevisiaeEukaryaRF01960Structure of the RQT-bound 80S ribosome from S. cerevisiae (C1)Electron microscopy3.4717712023-02-22
1348UTI|1|ESmall subunit ribosomal RNA18S rRNASaccharomyces cerevisiaeEukaryaRF01960Eukaryotic 80S ribosome with Reh1 and A/P site tRNAElectron microscopy3.1315972024-11-06
1354U4Y|1|2Small subunit ribosomal RNA18S ribosomal RNASaccharomyces cerevisiaeEukaryaRF01960Crystal structure of Pactamycin bound to the yeast 80S ribosomeX-ray diffraction3.217502014-10-22
1364U51|1|2Small subunit ribosomal RNA18S ribosomal RNASaccharomyces cerevisiaeEukaryaRF01960Crystal structure of Narciclasine bound to the yeast 80S ribosomeX-ray diffraction3.217502014-10-22
1376S47|1|BASmall subunit ribosomal RNA18S rRNA (1707-MER)Saccharomyces cerevisiaeEukaryaRF01960Saccharomyces cerevisiae 80S ribosome bound with ABCF protein New1Electron microscopy3.2817072019-07-24
1384U55|1|2Small subunit ribosomal RNA18S ribosomal RNASaccharomyces cerevisiaeEukaryaRF01960Crystal structure of Cryptopleurine bound to the yeast 80S ribosomeX-ray diffraction3.217502014-10-22
1396TNU|1|2Small subunit ribosomal RNA18S rRNASaccharomyces cerevisiaeEukaryaRF01960Yeast 80S ribosome in complex with eIF5A and decoding A-site and P-site tRNAs.Electron microscopy3.117712020-04-22
1409G33|1|D3+ 9G33|1|D2+ 9G33|1|D4Small subunit ribosomal RNA + U3 small nucleolar RNA18S rRNA, 5' ETS, U3 snoRNASaccharomyces cerevisiaeEukaryaRF01960 + RF01846Stalled 90S - Utp23-Krr1-deltaC3Electron microscopy3.0515812025-06-18
1416FAI|1|2Small subunit ribosomal RNA20S ribosomal RNASaccharomyces cerevisiaeEukaryaRF01960Structure of a eukaryotic cytoplasmic pre-40S ribosomal subunitElectron microscopy3.417752018-02-28
1425JUP|1|ASmall subunit ribosomal RNA18S ribosomal RNASaccharomyces cerevisiaeEukaryaRF01960Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure II (mid-rotated 40S subunit)Electron microscopy3.517812016-10-05
1436Z6K|1|C2Small subunit ribosomal RNA18S rRNASaccharomyces cerevisiaeEukaryaRF01960Cryo-EM structure of yeast reconstituted Lso2 bound to 80S ribosomesElectron microscopy3.417002020-07-29
1446Z6J|1|C2Small subunit ribosomal RNA18S rRNASaccharomyces cerevisiaeEukaryaRF01960Cryo-EM structure of yeast Lso2 bound to 80S ribosomes under native conditionElectron microscopy3.417002020-07-29
1454U53|1|6Small subunit ribosomal RNA18S ribosomal RNASaccharomyces cerevisiaeEukaryaRF01960Crystal structure of Deoxynivalenol bound to the yeast 80S ribosomeX-ray diffraction3.317952014-10-22
1464U50|1|2Small subunit ribosomal RNA18S ribosomal RNASaccharomyces cerevisiaeEukaryaRF01960Crystal structure of Verrucarin bound to the yeast 80S ribosomeX-ray diffraction3.217502014-10-22
1476RBD|1|2Small subunit ribosomal RNA20S ribosomal RNASaccharomyces cerevisiaeEukaryaRF01960State 1 of yeast Tsr1-TAP Rps20-Deltaloop pre-40S particlesElectron microscopy3.4717772019-06-26
1484U53|1|2Small subunit ribosomal RNA18S ribosomal RNASaccharomyces cerevisiaeEukaryaRF01960Crystal structure of Deoxynivalenol bound to the yeast 80S ribosomeX-ray diffraction3.317502014-10-22
1496SV4|1|2Small subunit ribosomal RNA18S rRNASaccharomyces cerevisiaeEukaryaRF01960The cryo-EM structure of SDD1-stalled collided trisome.Electron microscopy3.317582020-03-04
1508C00|1|2Small subunit ribosomal RNA18S rRNA precursorSaccharomyces cerevisiaeEukaryaRF01960Enp1TAP-S21_A population of yeast small ribosomal subunit precursors depleted of rpS21/eS21Electron microscopy2.914252022-12-28
1514U56|1|6Small subunit ribosomal RNA18S ribosomal RNASaccharomyces cerevisiaeEukaryaRF01960Crystal structure of Blasticidin S bound to the yeast 80S ribosomeX-ray diffraction3.4517952014-10-22
1528EVS|1|B5Small subunit ribosomal RNA18S rRNASaccharomyces cerevisiaeEukaryaRF01960Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2 and GDP, Structure IIElectron microscopy2.6211732023-09-06
1534U56|1|2Small subunit ribosomal RNA18S ribosomal RNASaccharomyces cerevisiaeEukaryaRF01960Crystal structure of Blasticidin S bound to the yeast 80S ribosomeX-ray diffraction3.4517502014-10-22
1548EVR|1|B5Small subunit ribosomal RNA18S rRNASaccharomyces cerevisiaeEukaryaRF01960Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, and sordarin, Structure IIElectron microscopy2.8711732023-09-06
1558C83|1|2Small subunit ribosomal RNA18S ribosomal RNASaccharomyces cerevisiaeEukaryaRF01960Cryo-EM structure of in vitro reconstituted Otu2-bound Ub-40S complexElectron microscopy311772023-05-24
1567WTR|1|C2Small subunit ribosomal RNA18S rRNASaccharomyces cerevisiaeEukaryaRF01960Cryo-EM structure of a yeast pre-40S ribosomal subunit - State Tsr1-3Electron microscopy3.512982022-10-19
1576ZQG|1|D3Small subunit ribosomal RNA18S rRNA, U3 snoRNASaccharomyces cerevisiaeEukaryaRF01960Cryo-EM structure of the 90S pre-ribosome from Saccharomyces cerevisiae, state Dis-CElectron microscopy3.513872020-09-23
1587WTN|1|C2Small subunit ribosomal RNA18S rRNASaccharomyces cerevisiaeEukaryaRF01960Cryo-EM structure of a yeast pre-40S ribosomal subunit - State Tsr1-1 (with Rps2)Electron microscopy3.412002022-10-19
1597WTL|1|C2Small subunit ribosomal RNA18S rRNASaccharomyces cerevisiaeEukaryaRF01960Cryo-EM structure of a yeast pre-40S ribosomal subunit - State Dis-DElectron microscopy3.311022022-10-19
1607WTO|1|C2Small subunit ribosomal RNA18S rRNASaccharomyces cerevisiaeEukaryaRF01960Cryo-EM structure of a yeast pre-40S ribosomal subunit - State Tsr1-1 (without Rps2)Electron microscopy3.512002022-10-19
1617WTM|1|C2Small subunit ribosomal RNA18S rRNASaccharomyces cerevisiaeEukaryaRF01960Cryo-EM structure of a yeast pre-40S ribosomal subunit - State Dis-EElectron microscopy3.511062022-10-19

Release history

Release3.393
Date2025-06-25

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This classParent classesRelease idIntersectionAdded to this classOnly in parent

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Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.

#SViewPDBTitleMethodResolution#NTs
15DAT|1|6Complex of yeast 80S ribosome with hypusine-containing eIF5AX-RAY DIFFRACTION3.151795
25DGF|1|6Complex of yeast 80S ribosome with hypusine-containing/non-modified eIF5A and/or a peptidyl-tRNA analogX-RAY DIFFRACTION3.31795
35DGE|1|6Coping with proline stalling: structural basis of hypusine-induced protein synthesis by the eukaryotic ribosomeX-RAY DIFFRACTION3.451795
45DC3|1|6Complex of yeast 80S ribosome with non-modified eIF5AX-RAY DIFFRACTION3.251795
55TBW|1|sRCrystal structure of chlorolissoclimide bound to the yeast 80S ribosomeX-RAY DIFFRACTION31783
66HHQ|1|sRCrystal structure of compound C45 bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.11783
75DGV|1|6Complex of yeast 80S ribosome with hypusine-containing/non-modified eIF5A and/or a peptidyl-tRNA analogX-RAY DIFFRACTION3.11795
85LYB|1|6Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCPmnX-RAY DIFFRACTION3.251795
95TGA|1|6Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCA-ProX-RAY DIFFRACTION3.31795
104V88|1|A6The structure of the eukaryotic ribosome at 3.0 A resolution.X-RAY DIFFRACTION31795
114U6F|1|6Crystal structure of T-2 toxin bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.11795
124U3N|1|6Crystal structure of CCA trinucleotide bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.21795
134U3U|1|6Crystal structure of Cycloheximide bound to the yeast 80S ribosomeX-RAY DIFFRACTION2.91795
144U4R|1|6Crystal structure of Lactimidomycin bound to the yeast 80S ribosomeX-RAY DIFFRACTION2.81795
154U3M|1|6Crystal structure of Anisomycin bound to the yeast 80S ribosomeX-RAY DIFFRACTION31795
164U4Y|1|6Crystal structure of Pactamycin bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.21795
174U53|1|6Crystal structure of Deoxynivalenol bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.31795
184U50|1|6Crystal structure of Verrucarin bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.21795
194U51|1|6Crystal structure of Narciclasine bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.21795
204U55|1|6Crystal structure of Cryptopleurine bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.21795
214U4Z|1|6Crystal structure of Phyllanthoside bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.11795
224U4N|1|6Crystal structure of Edeine bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.11795
234U4U|1|6Crystal structure of Lycorine bound to the yeast 80S ribosomeX-RAY DIFFRACTION31795
244U4Q|1|6Crystal structure of Homoharringtonine bound to the yeast 80S ribosomeX-RAY DIFFRACTION31795
255I4L|1|6Crystal structure of Amicoumacin A bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.11795
265FCI|1|6Structure of the vacant uL3 W255C mutant 80S yeast ribosomeX-RAY DIFFRACTION3.41795
275FCJ|1|6Structure of the anisomycin-containing uL3 W255C mutant 80S yeast ribosomeX-RAY DIFFRACTION3.11795
285TGM|1|6Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCA-ProX-RAY DIFFRACTION3.51795
294U56|1|6Crystal structure of Blasticidin S bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.451795
304U52|1|6Crystal structure of Nagilactone C bound to the yeast 80S ribosomeX-RAY DIFFRACTION31795
315ON6|1|6Crystal structure of haemanthamine bound to the 80S ribosomeX-RAY DIFFRACTION3.11783
325MEI|1|6Crystal structure of Agelastatin A bound to the 80S ribosomeX-RAY DIFFRACTION3.51783
338P9A|1|sR80S yeast ribosome in complex with MethyllissoclimideX-RAY DIFFRACTION2.91783
348P85|1|sR80S yeast ribosome in complex with FluorolissoclimideX-RAY DIFFRACTION2.91783
358PNN|1|sR80S yeast ribosome in complex with BromolissoclimideX-RAY DIFFRACTION2.91783
368P4V|1|sR80S yeast ribosome in complex with HaterumaimideQX-RAY DIFFRACTION3.161783
375OBM|1|6Crystal structure of Gentamicin bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.41739
385NDV|1|6Crystal structure of Paromomycin bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.31683
398K2D|1|C2Cryo-EM structure of the yeast 80S ribosome with tigecycline, eEF2, Stm1 and eIF5AELECTRON MICROSCOPY3.21700
408ZGR|1|S280S ribosome with A/A tRNA and mRNA of WNVELECTRON MICROSCOPY2.71771
417A1G|1|2Structure of a crosslinked yeast ABCE1-bound 43S pre-initiation complexELECTRON MICROSCOPY31771
428CAH|1|2Cryo-EM structure of native Otu2-bound ubiquitinated 43S pre-initiation complexELECTRON MICROSCOPY31745
435JUP|1|ASaccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure II (mid-rotated 40S subunit)ELECTRON MICROSCOPY3.51781
448BN3|1|2Yeast 80S, ES7s delta, eIF5A, Stm1 containingELECTRON MICROSCOPY2.41737
455NDV|1|2Crystal structure of Paromomycin bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.31712
468P9A|1|A80S yeast ribosome in complex with MethyllissoclimideX-RAY DIFFRACTION2.91741
478P85|1|A80S yeast ribosome in complex with FluorolissoclimideX-RAY DIFFRACTION2.91735
488P4V|1|A80S yeast ribosome in complex with HaterumaimideQX-RAY DIFFRACTION3.161781
498PNN|1|A80S yeast ribosome in complex with BromolissoclimideX-RAY DIFFRACTION2.91722
505FCJ|1|2Structure of the anisomycin-containing uL3 W255C mutant 80S yeast ribosomeX-RAY DIFFRACTION3.11781
515TGM|1|2Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCA-ProX-RAY DIFFRACTION3.51781
525FCI|1|2Structure of the vacant uL3 W255C mutant 80S yeast ribosomeX-RAY DIFFRACTION3.41781
535MEI|1|ACrystal structure of Agelastatin A bound to the 80S ribosomeX-RAY DIFFRACTION3.51781
545ON6|1|ACrystal structure of haemanthamine bound to the 80S ribosomeX-RAY DIFFRACTION3.11781
556HHQ|1|ACrystal structure of compound C45 bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.11781
565TBW|1|ACrystal structure of chlorolissoclimide bound to the yeast 80S ribosomeX-RAY DIFFRACTION31781
574U4Y|1|2Crystal structure of Pactamycin bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.21750
584U3M|1|2Crystal structure of Anisomycin bound to the yeast 80S ribosomeX-RAY DIFFRACTION31750
594U4R|1|2Crystal structure of Lactimidomycin bound to the yeast 80S ribosomeX-RAY DIFFRACTION2.81750
604U3U|1|2Crystal structure of Cycloheximide bound to the yeast 80S ribosomeX-RAY DIFFRACTION2.91750
614U6F|1|2Crystal structure of T-2 toxin bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.11781
624U3N|1|2Crystal structure of CCA trinucleotide bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.21750
634V88|1|A2The structure of the eukaryotic ribosome at 3.0 A resolution.X-RAY DIFFRACTION31781
645LYB|1|2Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCPmnX-RAY DIFFRACTION3.251781
655TGA|1|2Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCA-ProX-RAY DIFFRACTION3.31781
665I4L|1|2Crystal structure of Amicoumacin A bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.11781
674U4N|1|2Crystal structure of Edeine bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.11750
684U4U|1|2Crystal structure of Lycorine bound to the yeast 80S ribosomeX-RAY DIFFRACTION31750
694U4Q|1|2Crystal structure of Homoharringtonine bound to the yeast 80S ribosomeX-RAY DIFFRACTION31750
704U51|1|2Crystal structure of Narciclasine bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.21750
714U55|1|2Crystal structure of Cryptopleurine bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.21750
724U4Z|1|2Crystal structure of Phyllanthoside bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.11750
734U52|1|2Crystal structure of Nagilactone C bound to the yeast 80S ribosomeX-RAY DIFFRACTION31750
744U50|1|2Crystal structure of Verrucarin bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.21750
754U53|1|2Crystal structure of Deoxynivalenol bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.31750
764U56|1|2Crystal structure of Blasticidin S bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.451750
775DAT|1|2Complex of yeast 80S ribosome with hypusine-containing eIF5AX-RAY DIFFRACTION3.151781
785DGF|1|2Complex of yeast 80S ribosome with hypusine-containing/non-modified eIF5A and/or a peptidyl-tRNA analogX-RAY DIFFRACTION3.31781
795DGV|1|2Complex of yeast 80S ribosome with hypusine-containing/non-modified eIF5A and/or a peptidyl-tRNA analogX-RAY DIFFRACTION3.11781
805DC3|1|2Complex of yeast 80S ribosome with non-modified eIF5AX-RAY DIFFRACTION3.251781
815DGE|1|2Coping with proline stalling: structural basis of hypusine-induced protein synthesis by the eukaryotic ribosomeX-RAY DIFFRACTION3.451781
825OBM|1|2Crystal structure of Gentamicin bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.41712
837OSM|1|18SIntermediate translocation complex of 80 S.cerevisiae ribosome with eEF2 and ligandsX-RAY DIFFRACTION31732
848CG8|1|cTranslocation intermediate 3 (TI-3) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarinELECTRON MICROSCOPY2.571608
858CDR|1|cTranslocation intermediate 2 (TI-2) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarinELECTRON MICROSCOPY2.041608
868CEH|1|cTranslocation intermediate 4 (TI-4) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarinELECTRON MICROSCOPY2.051608
878CIV|1|cTranslocation intermediate 5 (TI-5) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarinELECTRON MICROSCOPY2.471622
888EUB|1|B5Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2 and GDP, Structure IELECTRON MICROSCOPY2.521782
898EVQ|1|B5Hypopseudouridylated Ribosome bound with TSV IRES, eEF2, GDP, and sordarin, Structure IELECTRON MICROSCOPY2.721782
908T3A|1|B5Hypomethylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, sordarin, and hibernating factor Los2ELECTRON MICROSCOPY2.861757
918T3B|1|B5Hypomethylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, and sordarin, Structure IELECTRON MICROSCOPY3.081757
927MPI|1|B5Stm1 bound vacant 80S structure isolated from cbf5-D95AELECTRON MICROSCOPY3.051781
937MPJ|1|B5Stm1 bound vacant 80S structure isolated from nop1-D243AELECTRON MICROSCOPY2.71781
947N8B|1|B5Cycloheximide bound vacant 80S structure isolated from cbf5-D95AELECTRON MICROSCOPY3.051783
958EVS|1|B5Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2 and GDP, Structure IIELECTRON MICROSCOPY2.621173
968EVR|1|B5Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, and sordarin, Structure IIELECTRON MICROSCOPY2.871173
978EWB|1|B5Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2 and GDP, Structure IIIELECTRON MICROSCOPY2.871782
988EVT|1|B5Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES) refined against a composite mapELECTRON MICROSCOPY2.21173
998EVP|1|B5Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), Structure IELECTRON MICROSCOPY2.381782
1008EWC|1|B5Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), Structure IIELECTRON MICROSCOPY2.451782
1018T30|1|B5Hypomethylated yeast 80S bound with cycloheximide, unmodified U2921, mid rotatedELECTRON MICROSCOPY2.881782
1028T3F|1|B5Hypomethylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, and sordarin, Structure VELECTRON MICROSCOPY3.091757
1038T3D|1|B5Hypomethylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, and sordarin, Structure IIIELECTRON MICROSCOPY2.951757
1048T3E|1|B5Hypomethylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, and sordarin, Structure IVELECTRON MICROSCOPY3.041757
1058T2Z|1|B5Hypomethylated yeast 80S bound with cycloheximide, P-site tRNA, and A-site tRNA, messenger RNA, POSTELECTRON MICROSCOPY2.41757
1068T2X|1|B5Hypomethylated yeast 80S bound with cycloheximide, P-site tRNA, A-site tRNA, messenger RNA and eIF5A, PREELECTRON MICROSCOPY2.461782
1078T2Y|1|B5Hypomethylated yeast 80S bound with cycloheximide, P-site tRNA, and A-site tRNA, messenger RNA, PREELECTRON MICROSCOPY2.21782
1088ZHC|1|S2pre-frameshift complex of yeast 80S ribosome with eRF1 and mRNA of WNVELECTRON MICROSCOPY2.31771
1098ZHB|1|S280S ribosome with A/A P/E tRNA and mRNA of WNVELECTRON MICROSCOPY2.61771
1108ZH3|1|S280S ribosome with A/P-P/E tRNA and mRNA of WNVELECTRON MICROSCOPY2.71771
1118ZGY|1|S280S ribosome with P/E tRNA and mRNA of WNVELECTRON MICROSCOPY2.81771
1126Q8Y|1|2Cryo-EM structure of the mRNA translating and degrading yeast 80S ribosome-Xrn1 nuclease complexELECTRON MICROSCOPY3.11767
1137B7D|1|2Yeast 80S ribosome bound to eEF3 and A/A- and P/P-tRNAsELECTRON MICROSCOPY3.31771
1148Z70|1|2State 1 (S1) of yeast 80S ribosome bound to 2 tRNAs during mRNA decodingELECTRON MICROSCOPY3.21771
1157ZPQ|1|2Structure of the RQT-bound 80S ribosome from S. cerevisiae (C1)ELECTRON MICROSCOPY3.471771
1169F9S|1|S1Yeast SDD1 Disome with Mbf1ELECTRON MICROSCOPY2.91771
1178K82|1|C2Cryo-EM structure of the yeast 80S ribosome with tigecycline, Not5 and P-site tRNAELECTRON MICROSCOPY31771
1186TB3|1|2yeast 80S ribosome in complex with the Not5 subunit of the CCR4-NOT complexELECTRON MICROSCOPY2.81771
1196T4Q|1|C2Structure of yeast 80S ribosome stalled on the CGA-CCG inhibitory codon combination.ELECTRON MICROSCOPY2.61771
1206SNT|1|2Yeast 80S ribosome stalled on SDD1 mRNA.ELECTRON MICROSCOPY2.81771
1216T7T|1|C2Structure of yeast 80S ribosome stalled on poly(A) tract.ELECTRON MICROSCOPY3.11771
1226T7I|1|C2Structure of yeast 80S ribosome stalled on the CGA-CGA inhibitory codon combination.ELECTRON MICROSCOPY3.21771
1238C83|1|2Cryo-EM structure of in vitro reconstituted Otu2-bound Ub-40S complexELECTRON MICROSCOPY31177
1248CAS|1|2Cryo-EM structure of native Otu2-bound ubiquitinated 48S initiation complex (partial)ELECTRON MICROSCOPY3.31763
1257ZW0|1|2FAP-80S Complex - Rotated stateELECTRON MICROSCOPY2.41765
1267RR5|1|C2Structure of ribosomal complex bound with Rbg1/Tma46ELECTRON MICROSCOPY3.231771
1278XU8|1|2State 2c(S2c) of yeast 80S ribosome bound to compact eEF2 and 2 tRNAs during peptidyl transferationELECTRON MICROSCOPY3.41767
1286TNU|1|2Yeast 80S ribosome in complex with eIF5A and decoding A-site and P-site tRNAs.ELECTRON MICROSCOPY3.11771
1298UT0|1|2Eukaryotic 80S ribosome with Reh1, eIF5A and A/P site tRNAELECTRON MICROSCOPY3.221771
1308UTI|1|EEukaryotic 80S ribosome with Reh1 and A/P site tRNAELECTRON MICROSCOPY3.131597
1316SV4|1|2The cryo-EM structure of SDD1-stalled collided trisome.ELECTRON MICROSCOPY3.31758
1326S47|1|BASaccharomyces cerevisiae 80S ribosome bound with ABCF protein New1ELECTRON MICROSCOPY3.281707
1336Z6K|1|C2Cryo-EM structure of yeast reconstituted Lso2 bound to 80S ribosomesELECTRON MICROSCOPY3.41700
1346Z6J|1|C2Cryo-EM structure of yeast Lso2 bound to 80S ribosomes under native conditionELECTRON MICROSCOPY3.41700
1355M1J|1|22Nonstop ribosomal complex bound with Dom34 and Hbs1ELECTRON MICROSCOPY3.31781
1367OSA|1|18SPre-translocation complex of 80 S.cerevisiae ribosome with eEF2 and ligandsX-RAY DIFFRACTION31717
1376WOO|1|2CryoEM structure of yeast 80S ribosome with Met-tRNAiMet, eIF5B, and GDPELECTRON MICROSCOPY2.91780
1388CGN|1|cNon-rotated 80S S. cerevisiae ribosome with ligandsELECTRON MICROSCOPY2.281624
1398CDL|1|c80S S. cerevisiae ribosome with ligands in hybrid-2 pre-translocation (PRE-H2) complexELECTRON MICROSCOPY2.721604
1408CCS|1|c80S S. cerevisiae ribosome with ligands in hybrid-1 pre-translocation (PRE-H1) complexELECTRON MICROSCOPY1.971604
1418CF5|1|cTranslocation intermediate 1 (TI-1) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarinELECTRON MICROSCOPY2.711604
1428CKU|1|cTranslocation intermediate 1 (TI-1*) of 80S S. cerevisiae ribosome with ligands and eEF2 in the absence of sordarinELECTRON MICROSCOPY3.111604
1437ZUX|1|2Collided ribosome in a disome unit from S. cerevisiaeELECTRON MICROSCOPY2.51769
1446SV4|1|2bThe cryo-EM structure of SDD1-stalled collided trisome.ELECTRON MICROSCOPY3.31758
1456SV4|1|2cThe cryo-EM structure of SDD1-stalled collided trisome.ELECTRON MICROSCOPY3.31758
1466ZVI|1|hMbf1-ribosome complexELECTRON MICROSCOPY31758
1479F9S|1|R1Yeast SDD1 Disome with Mbf1ELECTRON MICROSCOPY2.91758
1486XIR|1|2Cryo-EM Structure of K63 Ubiquitinated Yeast Translocating Ribosome under Oxidative StressELECTRON MICROSCOPY3.21708
1496FAI|1|2Structure of a eukaryotic cytoplasmic pre-40S ribosomal subunitELECTRON MICROSCOPY3.41775
1506RBD|1|2State 1 of yeast Tsr1-TAP Rps20-Deltaloop pre-40S particlesELECTRON MICROSCOPY3.471777
1518C01|1|2Enp1TAP_A population of yeast small ribosomal subunit precursorsELECTRON MICROSCOPY2.71545
1528C00|1|2Enp1TAP-S21_A population of yeast small ribosomal subunit precursors depleted of rpS21/eS21ELECTRON MICROSCOPY2.91425
1537WTR|1|C2Cryo-EM structure of a yeast pre-40S ribosomal subunit - State Tsr1-3ELECTRON MICROSCOPY3.51298
1547WTM|1|C2Cryo-EM structure of a yeast pre-40S ribosomal subunit - State Dis-EELECTRON MICROSCOPY3.51106
1557WTO|1|C2Cryo-EM structure of a yeast pre-40S ribosomal subunit - State Tsr1-1 (without Rps2)ELECTRON MICROSCOPY3.51200
1567WTN|1|C2Cryo-EM structure of a yeast pre-40S ribosomal subunit - State Tsr1-1 (with Rps2)ELECTRON MICROSCOPY3.41200
1577WTL|1|C2Cryo-EM structure of a yeast pre-40S ribosomal subunit - State Dis-DELECTRON MICROSCOPY3.31102
1586ZQG|1|D3Cryo-EM structure of the 90S pre-ribosome from Saccharomyces cerevisiae, state Dis-CELECTRON MICROSCOPY3.51387
1599G33|1|D3+ 9G33|1|D2+ 9G33|1|D4Stalled 90S - Utp23-Krr1-deltaC3ELECTRON MICROSCOPY3.051581
1606LQP|1|SA+ 6LQP|1|5A+ 6LQP|1|3ACryo-EM structure of 90S small subunit preribosomes in transition states (State A)ELECTRON MICROSCOPY3.22023
1616KE6|1|SA+ 6KE6|1|5A+ 6KE6|1|3A3.4 angstrom cryo-EM structure of yeast 90S small subunit preribosomeELECTRON MICROSCOPY3.42007

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.


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