Equivalence class NR_3.5_05364.2 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | #NTs | Date |
|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 9B0G|1|Et (rep) | Transfer RNA | E site tRNA [Homo sapiens] | Homo sapiens | Eukarya | RF00005 | In situ human Hibernating class4 80S ribosome | Electron microscopy | 2.57 | 75 | 2025-03-19 |
| 2 | 9B0H|1|Et | Transfer RNA | E site tRNA [Homo sapiens] | Homo sapiens | Eukarya | RF00005 | In situ human Hibernating class5 80S ribosome | Electron microscopy | 2.59 | 75 | 2025-03-19 |
| 3 | 9B0F|1|Et | Transfer RNA | E site tRNA [Homo sapiens] | Homo sapiens | Eukarya | RF00005 | In situ human Hibernating class3 80S ribosome | Electron microscopy | 2.78 | 75 | 2025-03-19 |
| 4 | 9DPL|1|C | Transfer RNA | tRNA-Lys3 (Cellular modified) | Homo sapiens | Eukarya | RF00005 | Human LysRS bound to cellular modified tRNA-Lys3 and AIMP2 | Electron microscopy | 2.8 | 76 | 2025-03-12 |
| 5 | 9B0R|1|Et | Transfer RNA | E site tRNA | Homo sapiens | Eukarya | RF00005 | In situ human hibernating class2 80S ribosome | Electron microscopy | 2.81 | 75 | 2025-03-19 |
| 6 | 9B0P|1|Et | Transfer RNA | E site tRNA | Homo sapiens | Eukarya | RF00005 | In situ human Hibernating class1 80S ribosome | Electron microscopy | 2.82 | 75 | 2025-03-19 |
| 7 | 9DPA|1|C | Transfer RNA | tRNA-Lys3 | Homo sapiens | Eukarya | RF00005 | Human LysRS bound to unmodified tRNA-Lys3 (3'-CCA Docked State, AMP bound) | Electron microscopy | 3 | 76 | 2025-03-12 |
| 8 | 9DPB|1|C | Transfer RNA | tRNA-Lys3 (unmodified) | Homo sapiens | Eukarya | RF00005 | Human LysRS bound to unmodified tRNA-Lys3 (Undocked State, AMPCPP bound) | Electron microscopy | 2.9 | 73 | 2025-03-12 |
| 9 | 9B0Q|1|PE | Transfer RNA | P/E site tRNA [Homo sapiens] | Homo sapiens | Eukarya | RF00005 | In situ human top-back di-ribosome structure (Composite map) | Electron microscopy | 3.2 | 75 | 2025-03-19 |
| 10 | 9B0Q|1|pE | Transfer RNA | P/E site tRNA [Homo sapiens] | Homo sapiens | Eukarya | RF00005 | In situ human top-back di-ribosome structure (Composite map) | Electron microscopy | 3.2 | 75 | 2025-03-19 |
| 11 | 9DOW|1|C | Transfer RNA | tRNA-Lys3 (Unmodified) | Homo sapiens | Eukarya | RF00005 | h-LysRS bound to unmodified tRNA-Lys3 (Undocked State, AMP bound) | Electron microscopy | 3.1 | 73 | 2025-03-12 |
Release history
| Release | 3.381 |
|---|---|
| Date | 2025-04-02 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|
Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.
| #S | View | PDB | Title | Method | Resolution | #NTs |
|---|---|---|---|---|---|---|
| 1 | 9B0F|1|Et | In situ human Hibernating class3 80S ribosome | ELECTRON MICROSCOPY | 2.78 | 75 | |
| 2 | 9B0R|1|Et | In situ human hibernating class2 80S ribosome | ELECTRON MICROSCOPY | 2.81 | 75 | |
| 3 | 9B0P|1|Et | In situ human Hibernating class1 80S ribosome | ELECTRON MICROSCOPY | 2.82 | 75 | |
| 4 | 9B0H|1|Et | In situ human Hibernating class5 80S ribosome | ELECTRON MICROSCOPY | 2.59 | 75 | |
| 5 | 9B0G|1|Et | In situ human Hibernating class4 80S ribosome | ELECTRON MICROSCOPY | 2.57 | 75 | |
| 6 | 9B0Q|1|pE | In situ human top-back di-ribosome structure (Composite map) | ELECTRON MICROSCOPY | 3.2 | 75 | |
| 7 | 9B0Q|1|PE | In situ human top-back di-ribosome structure (Composite map) | ELECTRON MICROSCOPY | 3.2 | 75 | |
| 8 | 9DPB|1|C | Human LysRS bound to unmodified tRNA-Lys3 (Undocked State, AMPCPP bound) | ELECTRON MICROSCOPY | 2.9 | 73 | |
| 9 | 9DOW|1|C | h-LysRS bound to unmodified tRNA-Lys3 (Undocked State, AMP bound) | ELECTRON MICROSCOPY | 3.1 | 73 | |
| 10 | 9DPL|1|C | Human LysRS bound to cellular modified tRNA-Lys3 and AIMP2 | ELECTRON MICROSCOPY | 2.8 | 76 | |
| 11 | 9DPA|1|C | Human LysRS bound to unmodified tRNA-Lys3 (3'-CCA Docked State, AMP bound) | ELECTRON MICROSCOPY | 3 | 76 |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.
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