Equivalence class NR_3.5_05887.9 Current
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | #NTs | Date |
|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 9R3A|1|Z (rep) | Transfer RNA | P-site tRNA | Escherichia coli | Bacteria | RF00005 | Structure of Stalled Beta-Galactosidase 70S Ribosome Nascent Chain | Electron microscopy | 2.86 | 76 | 2026-01-28 |
| 2 | 7YSE|1|E | Transfer RNA | RNA (76-MER) | Escherichia coli | Bacteria | RF00005 | Crystal structure of E. coli hetertetrameric GlyRS in complex with tRNA | X-ray diffraction | 2.907 | 76 | 2023-02-01 |
| 3 | 9WNQ|1|X | Transfer RNA | E-site tRNA | Escherichia coli | Bacteria | RF00005 | Structure of E.coli ribosome in complex with an engineered arrest peptide | Electron microscopy | 2.59 | 76 | 2025-10-22 |
| 4 | 7F36|1|F | Transfer RNA | RNA (76-MER) | Escherichia coli | Bacteria | RF00005 | TacT complexed with acetyl-glycyl-tRNAGly | X-ray diffraction | 3.098 | 76 | 2021-12-22 |
| 5 | 7F36|1|G | Transfer RNA | RNA (76-MER) | Escherichia coli | Bacteria | RF00005 | TacT complexed with acetyl-glycyl-tRNAGly | X-ray diffraction | 3.098 | 76 | 2021-12-22 |
| 6 | 7F36|1|E | Transfer RNA | RNA (76-MER) | Escherichia coli | Bacteria | RF00005 | TacT complexed with acetyl-glycyl-tRNAGly | X-ray diffraction | 3.098 | 73 | 2021-12-22 |
| 7 | 9I3L|1|Z | Transfer RNA | Peptidyl Gly-tRNA | Escherichia coli | Bacteria | RF00005 | Structure of E.coli ribosome with filamin mutant Y719E nascent chain at linker length of 47 amino acids, with tRNA | Electron microscopy | 3.1 | 76 | 2026-02-04 |
| 8 | 7F36|1|H | Transfer RNA | RNA (76-MER) | Escherichia coli | Bacteria | RF00005 | TacT complexed with acetyl-glycyl-tRNAGly | X-ray diffraction | 3.098 | 72 | 2021-12-22 |
| 9 | 8ZEJ|1|X | Transfer RNA | E-site tRNA | Escherichia coli | Bacteria | RF00005 | Structure of E.coli ribosome in complex with an engineered arrest peptide | Electron microscopy | 2.69 | 76 | 2025-06-18 |
| 10 | 7YSE|1|F | Transfer RNA | RNA (76-MER) | Escherichia coli | Bacteria | RF00005 | Crystal structure of E. coli hetertetrameric GlyRS in complex with tRNA | X-ray diffraction | 2.907 | 64 | 2023-02-01 |
| 11 | 9WNR|1|X | Transfer RNA | E-tRNA | Escherichia coli | Bacteria | RF00005 | Structure of E.coli ribosome in complex with an engineered arrest peptide and trigger factor | Electron microscopy | 2.76 | 76 | 2025-10-22 |
| 12 | 8ZFI|1|X | Transfer RNA | E-site tRNA | Escherichia coli | Bacteria | RF00005 | Structure of E.coli ribosome in complex with an engineered arrest peptide and trigger factor | Electron microscopy | 2.9 | 76 | 2025-06-18 |
| 13 | 7ZQ6|1|M | Transfer RNA | Gly-tRNA | Escherichia coli | Bacteria | RF00005 | 70S E. coli ribosome with truncated uL23 and uL24 loops and a stalled filamin domain 5 nascent chain | Electron microscopy | 2.75 | 76 | 2022-08-10 |
| 14 | 6OM6|1|5 | Transfer RNA | mRNA, tRNA(gly) | Escherichia coli | Bacteria | RF00005 | Structure of trans-translation inhibitor bound to E. coli 70S ribosome with P site tRNA | Electron microscopy | 3.1 | 76 | 2021-02-10 |
| 15 | 8QOA|1|Z | Transfer RNA | mRNA, P-site tRNA-gly | Escherichia coli BW25113 | Bacteria | RF00005 | Structure of SecM-stalled Escherichia coli 70S ribosome | Electron microscopy | 2 | 76 | 2024-03-20 |
| 16 | 9VVI|1|Z | Transfer RNA | P-site tRNA (tRNAGly), SecM mRNA | Escherichia coli | Bacteria | RF00005 | Cryo-EM structure of SecM-arrested 70S ribosome with YheS | Electron microscopy | 2.82 | 76 | 2026-06-17 |
| 17 | 9XWO|1|Z | Transfer RNA | P-site tRNA (tRNAGly), SecM mRNA | Escherichia coli | Bacteria | RF00005 | Cryo-EM structure of SecM-arrested 70S ribosome (short SecM) | Electron microscopy | 2.89 | 76 | 2026-06-17 |
Release history
| Release | 4.44 |
|---|---|
| Date | 2026-06-17 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|
Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.
| #S | View | PDB | Title | Method | Resolution | #NTs |
|---|---|---|---|---|---|---|
| 1 | 8ZEJ|1|X | Structure of E.coli ribosome in complex with an engineered arrest peptide | ELECTRON MICROSCOPY | 2.69 | 76 | |
| 2 | 9WNQ|1|X | Structure of E.coli ribosome in complex with an engineered arrest peptide | ELECTRON MICROSCOPY | 2.59 | 76 | |
| 3 | 8ZFI|1|X | Structure of E.coli ribosome in complex with an engineered arrest peptide and trigger factor | ELECTRON MICROSCOPY | 2.9 | 76 | |
| 4 | 9WNR|1|X | Structure of E.coli ribosome in complex with an engineered arrest peptide and trigger factor | ELECTRON MICROSCOPY | 2.76 | 76 | |
| 5 | 9R3A|1|Z | Structure of Stalled Beta-Galactosidase 70S Ribosome Nascent Chain | ELECTRON MICROSCOPY | 2.86 | 76 | |
| 6 | 8QOA|1|Z | Structure of SecM-stalled Escherichia coli 70S ribosome | ELECTRON MICROSCOPY | 2 | 76 | |
| 7 | 9I3L|1|Z | Structure of E.coli ribosome with filamin mutant Y719E nascent chain at linker length of 47 amino acids, with tRNA | ELECTRON MICROSCOPY | 3.1 | 76 | |
| 8 | 7ZQ6|1|M | 70S E. coli ribosome with truncated uL23 and uL24 loops and a stalled filamin domain 5 nascent chain | ELECTRON MICROSCOPY | 2.75 | 76 | |
| 9 | 9XWO|1|Z | Cryo-EM structure of SecM-arrested 70S ribosome (short SecM) | ELECTRON MICROSCOPY | 2.89 | 76 | |
| 10 | 9VVI|1|Z | Cryo-EM structure of SecM-arrested 70S ribosome with YheS | ELECTRON MICROSCOPY | 2.82 | 76 | |
| 11 | 6OM6|1|5 | Structure of trans-translation inhibitor bound to E. coli 70S ribosome with P site tRNA | ELECTRON MICROSCOPY | 3.1 | 76 | |
| 12 | 7YSE|1|E | Crystal structure of E. coli hetertetrameric GlyRS in complex with tRNA | X-RAY DIFFRACTION | 2.907 | 76 | |
| 13 | 7YSE|1|F | Crystal structure of E. coli hetertetrameric GlyRS in complex with tRNA | X-RAY DIFFRACTION | 2.907 | 64 | |
| 14 | 7F36|1|H | TacT complexed with acetyl-glycyl-tRNAGly | X-RAY DIFFRACTION | 3.098 | 72 | |
| 15 | 7F36|1|E | TacT complexed with acetyl-glycyl-tRNAGly | X-RAY DIFFRACTION | 3.098 | 73 | |
| 16 | 7F36|1|G | TacT complexed with acetyl-glycyl-tRNAGly | X-RAY DIFFRACTION | 3.098 | 76 | |
| 17 | 7F36|1|F | TacT complexed with acetyl-glycyl-tRNAGly | X-RAY DIFFRACTION | 3.098 | 76 |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.
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