NR_3.5_06650.41

Members (61)
History
Heat map

#	IFE	Standardized name	Molecule	Organism	Source	Rfam	Title	Method	Res. Å	#NTs	Date
1	7O7Y\|1\|B5+ 7O7Y\|1\|B8 (rep)	Large subunit ribosomal RNA + 5.8S ribosomal RNA	28S rRNA, 5.8S rRNA	Oryctolagus cuniculus	Eukarya	RF02543 + RF00002	Rabbit 80S ribosome stalled close to the mutated SARS-CoV-2 slippery site by a pseudoknot (high resolution)	Electron microscopy	2.2	3920	2021-06-02
2	7O7Z\|1\|B5+ 7O7Z\|1\|B8	Large subunit ribosomal RNA + 5.8S ribosomal RNA	28S rRNA, 5.8S rRNA	Oryctolagus cuniculus	Eukarya	RF02543 + RF00002	Rabbit 80S ribosome stalled close to the mutated SARS-CoV-2 slippery site by a pseudoknot (classified for pseudoknot)	Electron microscopy	2.4	3920	2021-06-02
3	7OYD\|1\|5+ 7OYD\|1\|8	Large subunit ribosomal RNA + 5.8S ribosomal RNA	28S rRNA, 5.8S rRNA	Oryctolagus cuniculus	Eukarya	RF02543 + RF00002	Cryo-EM structure of a rabbit 80S ribosome with zebrafish Dap1b	Electron microscopy	2.3	3502	2022-07-20
4	8SCB\|1\|5+ 8SCB\|1\|8	Large subunit ribosomal RNA + 5.8S ribosomal RNA	28S_rRNA, 5.8S_rRNA	Oryctolagus cuniculus	Eukarya	RF02543 + RF00002	Terminating ribosome with SRI-41315	Electron microscopy	2.5	3686	2023-12-27
5	7ZJW\|1\|L5+ 7ZJW\|1\|L8	Large subunit ribosomal RNA + 5.8S ribosomal RNA	28S rRNA, 5.8S rRNA	Oryctolagus cuniculus	Eukarya	RF02543 + RF00002	Rabbit 80S ribosome as it decodes the Sec-UGA codon	Electron microscopy	2.8	3920	2022-10-19
6	7O80\|1\|B5+ 7O80\|1\|B8	Large subunit ribosomal RNA + 5.8S ribosomal RNA	28S rRNA, 5.8S rRNA	Oryctolagus cuniculus	Eukarya	RF02543 + RF00002	Rabbit 80S ribosome in complex with eRF1 and ABCE1 stalled at the STOP codon in the mutated SARS-CoV-2 slippery site	Electron microscopy	2.9	3920	2021-06-02
7	8P2K\|1\|B5+ 8P2K\|1\|B8	Large subunit ribosomal RNA + 5.8S ribosomal RNA	28S rRNA, 5.8S rRNA	Oryctolagus cuniculus	Eukarya	RF02543 + RF00002	Ternary complex of translating ribosome, NAC and METAP1	Electron microscopy	2.9	3920	2023-07-19
8	8RJB\|1\|K+ 8RJB\|1\|v	Large subunit ribosomal RNA + 5.8S ribosomal RNA	28S rRNA, 5.8S rRNA	Oryctolagus cuniculus	Eukarya	RF02543 + RF00002	Structure of the rabbit 80S ribosome stalled on a 2-TMD rhodopsin intermediate in complex with Sec61-RAMP4	Electron microscopy	2.69243	3699	2024-01-24
9	9QQA\|1\|B5+ 9QQA\|1\|B8	Large subunit ribosomal RNA + 5.8S ribosomal RNA	28S rRNA, 5.8S rRNA	Oryctolagus cuniculus	Eukarya	RF02543 + RF00002	Ternary complex of translating ribosome, NAC and NMT1	Electron microscopy	2.8	3862	2025-07-16
10	8B6C\|1\|5+ 8B6C\|1\|8	Large subunit ribosomal RNA + 5.8S ribosomal RNA	28S rRNA, 5.8S rRNA	Oryctolagus cuniculus	Eukarya	RF02543 + RF00002	Cryo-EM structure of ribosome-Sec61 in complex with cyclotriazadisulfonamide derivative CK147	Electron microscopy	2.79	3770	2023-02-22
11	8VVQ\|1\|WA+ 8VVQ\|1\|YA	Large subunit ribosomal RNA + 5.8S ribosomal RNA	28S rRNA, 5.8S rRNA	Oryctolagus cuniculus	Eukarya	RF02543 + RF00002	Codon sampling state of elongation inhibitor-treated mammalian ribosomes obtained from merged datasets	Electron microscopy	2.7	3734	2025-07-30
12	8RJD\|1\|K+ 8RJD\|1\|v	Large subunit ribosomal RNA + 5.8S ribosomal RNA	28S rRNA, 5.8S rRNA	Oryctolagus cuniculus	Eukarya	RF02543 + RF00002	Structure of the rabbit 80S ribosome stalled on a 2-TMD rhodopsin intermediate in complex with Sec61-TRAP, open conformation 2	Electron microscopy	2.78574	3699	2024-01-24
13	8B5L\|1\|5+ 8B5L\|1\|8	Large subunit ribosomal RNA + 5.8S ribosomal RNA	28S rRNA, 5.8S rRNA	Oryctolagus cuniculus	Eukarya	RF02543 + RF00002	Cryo-EM structure of ribosome-Sec61-TRAP (TRanslocon Associated Protein) translocon complex	Electron microscopy	2.86	3770	2023-03-01
14	9BDL\|1\|A28S+ 9BDL\|1\|A58S	Large subunit ribosomal RNA + 5.8S ribosomal RNA	28S rRNA, 5.8S rRNA	Oryctolagus cuniculus	Eukarya	RF02543 + RF00002	80S ribosome with angiogenin	Electron microscopy	2.8	3708	2024-07-24
15	7UCK\|1\|5+ 7UCK\|1\|8	Large subunit ribosomal RNA + 5.8S ribosomal RNA	28s rRNA, 5.8S rRNA	Oryctolagus cuniculus	Eukarya	RF02543 + RF00002	80S translation initiation complex with ac4c(-1) mRNA and Harringtonine	Electron microscopy	2.8	3697	2022-06-01
16	8BPO\|1\|A1+ 8BPO\|1\|C1	Large subunit ribosomal RNA + 5.8S ribosomal RNA	28S ribosomal RNA, 5.8S ribosomal RNA	Oryctolagus cuniculus	Eukarya	RF02543 + RF00002	Structure of rabbit 80S ribosome translating beta-tubulin in complex with tetratricopeptide protein 5 (TTC5) and S-phase Cyclin A Associated Protein residing in the ER (SCAPER)	Electron microscopy	2.8	3694	2023-07-05
17	6SGC\|1\|54+ 6SGC\|1\|84	Large subunit ribosomal RNA + 5.8S ribosomal RNA	28S ribosomal RNA, 5.8S ribosomal RNA	Oryctolagus cuniculus	Eukarya	RF02543 + RF00002	Rabbit 80S ribosome stalled on a poly(A) tail	Electron microscopy	2.8	3754	2019-12-04
18	7OBR\|1\|5+ 7OBR\|1\|8	Large subunit ribosomal RNA + 5.8S ribosomal RNA	28S rRNA, 5.8S ribosomal RNA	Oryctolagus cuniculus	Eukarya	RF02543 + RF00002	RNC-SRP early complex	Electron microscopy	2.8	3649	2021-07-21
19	9F1B\|1\|B5+ 9F1B\|1\|B8	Large subunit ribosomal RNA + 5.8S ribosomal RNA	28S rRNA, 5.8S rRNA	Oryctolagus cuniculus	Eukarya	RF02543 + RF00002	Mammalian ternary complex of a translating 80S ribosome, NAC and NatA/E	Electron microscopy	3.01	3862	2024-08-21
20	7QWQ\|1\|5+ 7QWQ\|1\|8	Large subunit ribosomal RNA + 5.8S ribosomal RNA	28S rRNA, 5.8S ribosomal RNA	Oryctolagus cuniculus	Eukarya	RF02543 + RF00002	Ternary complex of ribosome nascent chain with SRP and NAC	Electron microscopy	2.83	3649	2022-03-16
21	7O81\|1\|B5+ 7O81\|1\|B8	Large subunit ribosomal RNA + 5.8S ribosomal RNA	28S rRNA, 5.8S rRNA	Oryctolagus cuniculus	Eukarya	RF02543 + RF00002	Rabbit 80S ribosome colliding in another ribosome stalled by the SARS-CoV-2 pseudoknot	Electron microscopy	3.1	3920	2021-06-02
22	7TOR\|1\|A28S+ 7TOR\|1\|A58S	Large subunit ribosomal RNA + 5.8S ribosomal RNA	28S rRNA, 5.8S rRNA	Oryctolagus cuniculus	Eukarya	RF02543 + RF00002	Mammalian 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein GR20	Electron microscopy	2.9	3703	2022-05-25
23	8RJC\|1\|K+ 8RJC\|1\|v	Large subunit ribosomal RNA + 5.8S ribosomal RNA	28S rRNA, 5.8S rRNA	Oryctolagus cuniculus	Eukarya	RF02543 + RF00002	Structure of the rabbit 80S ribosome stalled on a 2-TMD rhodopsin intermediate in complex with Sec61-TRAP, open conformation 1	Electron microscopy	2.90061	3699	2024-01-24
24	7ZJX\|1\|L5+ 7ZJX\|1\|L8	Large subunit ribosomal RNA + 5.8S ribosomal RNA	28S rRNA, 5.8S rRNA	Oryctolagus cuniculus	Eukarya	RF02543 + RF00002	Rabbit 80S ribosome programmed with SECIS and SBP2	Electron microscopy	3.1	3888	2022-09-07
25	7QWR\|1\|5+ 7QWR\|1\|8	Large subunit ribosomal RNA + 5.8S ribosomal RNA	28S rRNA, 5.8S ribosomal RNA	Oryctolagus cuniculus	Eukarya	RF02543 + RF00002	Structure of the ribosome-nascent chain containing an ER signal sequence in complex with NAC	Electron microscopy	2.9	3649	2022-03-09
26	8VVP\|1\|WA+ 8VVP\|1\|YA	Large subunit ribosomal RNA + 5.8S ribosomal RNA	28S rRNA, 5.8S rRNA	Oryctolagus cuniculus	Eukarya	RF02543 + RF00002	Codon sampling state obtained from Anisomycin-treated mammalian ribosomes	Electron microscopy	2.9	3734	2025-07-30
27	7TOQ\|1\|A25S+ 7TOQ\|1\|A58S	Large subunit ribosomal RNA + 5.8S ribosomal RNA	28S rRNA, 5.8S rRNA	Oryctolagus cuniculus	Eukarya	RF02543 + RF00002	Mammalian 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein poly-PR	Electron microscopy	3.1	3805	2022-05-25
28	7NWI\|1\|5+ 7NWI\|1\|8	Large subunit ribosomal RNA + 5.8S ribosomal RNA	28S ribosomal RNA+BlaS, 5.8S ribosomal RNA	Oryctolagus cuniculus	Eukarya	RF02543 + RF00002	Mammalian pre-termination 80S ribosome with Empty-A site bound by Blasticidin S	Electron microscopy	3.13	3818	2021-07-07
29	8BHF\|1\|A2+ 8BHF\|1\|C2	Large subunit ribosomal RNA + 5.8S ribosomal RNA	28S ribosomal RNA, 5.8S ribosomal RNA	Oryctolagus cuniculus	Eukarya	RF02543 + RF00002	Cryo-EM structure of stalled rabbit 80S ribosomes in complex with human CCR4-NOT and CNOT4	Electron microscopy	3.1	3754	2023-09-06
30	8VVT\|1\|WA+ 8VVT\|1\|YA	Large subunit ribosomal RNA + 5.8S ribosomal RNA	28S rRNA, 5.8S rRNA	Oryctolagus cuniculus	Eukarya	RF02543 + RF00002	Mammalian ribosomes bound to Anisomycin in the rotated conformation	Electron microscopy	2.9	3692	2025-07-30
31	6R6P\|1\|5+ 6R6P\|1\|8	Large subunit ribosomal RNA + 5.8S ribosomal RNA	28S ribosomal RNA, 5.8S ribosomal RNA	Oryctolagus cuniculus	Eukarya	RF02543 + RF00002	Structure of XBP1u-paused ribosome nascent chain complex (rotated state)	Electron microscopy	3.1	3818	2019-07-10
32	6R5Q\|1\|5+ 6R5Q\|1\|8	Large subunit ribosomal RNA + 5.8S ribosomal RNA	28S ribosomal RNA, 5.8S ribosomal RNA	Oryctolagus cuniculus	Eukarya	RF02543 + RF00002	Structure of XBP1u-paused ribosome nascent chain complex (post-state)	Electron microscopy	3	3694	2019-07-10
33	9BDN\|1\|A28S+ 9BDN\|1\|A58S	Large subunit ribosomal RNA + 5.8S ribosomal RNA	28S rRNA, 5.8S rRNA	Oryctolagus cuniculus	Eukarya	RF02543 + RF00002	80S ribosome with angiogenin and tRNAAla	Electron microscopy	3.1	3708	2024-07-24
34	6P5I\|1\|5+ 6P5I\|1\|8	Large subunit ribosomal RNA + 5.8S ribosomal RNA	28S rRNA, 5.8S rRNA	Oryctolagus cuniculus	Eukarya	RF02543 + RF00002	Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 1)	Electron microscopy	3.1	3745	2019-09-18
35	6P5J\|1\|5+ 6P5J\|1\|8	Large subunit ribosomal RNA + 5.8S ribosomal RNA	28S rRNA, 5.8S rRNA	Oryctolagus cuniculus	Eukarya	RF02543 + RF00002	Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 2)	Electron microscopy	3.1	3745	2019-09-18
36	9F1D\|1\|B5+ 9F1D\|1\|B8	Large subunit ribosomal RNA + 5.8S ribosomal RNA	28S rRNA, 5.8S rRNA	Oryctolagus cuniculus	Eukarya	RF02543 + RF00002	Mammalian quaternary complex of a translating 80S ribosome, NAC, MetAP1 and NatA/E-HYPK	Electron microscopy	3.26	3862	2024-08-21
37	6P5K\|1\|5+ 6P5K\|1\|8	Large subunit ribosomal RNA + 5.8S ribosomal RNA	28S rRNA, 5.8S rRNA	Oryctolagus cuniculus	Eukarya	RF02543 + RF00002	Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 3)	Electron microscopy	3.1	3745	2019-09-18
38	6ZVK\|1\|e2+ 6ZVK\|1\|h2	Large subunit ribosomal RNA + 5.8S ribosomal RNA	28S RIBOSOMAL RNA, 5.8S RIBOSOMAL RNA	Oryctolagus cuniculus	Eukarya	RF02543 + RF00002	The Halastavi arva virus (HalV) intergenic region IRES promotes translation by the simplest possible initiation mechanism	Electron microscopy	3.49	4076	2020-12-23
39	7UCJ\|1\|5+ 7UCJ\|1\|8	Large subunit ribosomal RNA + 5.8S ribosomal RNA	28s rRNA, 5.8S rRNA	Oryctolagus cuniculus	Eukarya	RF02543 + RF00002	Mammalian 80S translation initiation complex with mRNA and Harringtonine	Electron microscopy	3.1	3649	2022-06-01
40	8VVR\|1\|WA+ 8VVR\|1\|YA	Large subunit ribosomal RNA + 5.8S ribosomal RNA	28S rRNA, 5.8S rRNA	Oryctolagus cuniculus	Eukarya	RF02543 + RF00002	Post-decoding/Post-hydrolysis state obtained from Anisomycin-treated mammalian ribosomes	Electron microscopy	3.1	3734	2025-07-30
41	8VVS\|1\|WA+ 8VVS\|1\|YA	Large subunit ribosomal RNA + 5.8S ribosomal RNA	28S rRNA, 5.8S rRNA	Oryctolagus cuniculus	Eukarya	RF02543 + RF00002	Post-decoding post-hydrolysis state obtained from merged datasets of elongation inhibitor-treated mammalian ribosomes	Electron microscopy	3.1	3734	2025-07-30
42	6P5N\|1\|5+ 6P5N\|1\|8	Large subunit ribosomal RNA + 5.8S ribosomal RNA	28S rRNA, 5.8S rRNA	Oryctolagus cuniculus	Eukarya	RF02543 + RF00002	Structure of a mammalian 80S ribosome in complex with a single translocated Israeli Acute Paralysis Virus IRES and eRF1	Electron microscopy	3.2	3745	2019-09-25
43	7MDZ\|1\|5+ 7MDZ\|1\|8	Large subunit ribosomal RNA + 5.8S ribosomal RNA	28S rRNA, 5.8S rRNA	Oryctolagus cuniculus	Eukarya	RF02543 + RF00002	80S rabbit ribosome stalled with benzamide-CHX	Electron microscopy	3.2	3692	2021-09-01
44	6D9J\|1\|5+ 6D9J\|1\|8	Large subunit ribosomal RNA + 5.8S ribosomal RNA	28S rRNA, 5.8S rRNA	Oryctolagus cuniculus	Eukarya	RF02543 + RF00002	Mammalian 80S ribosome with a double translocated CrPV-IRES, P-sitetRNA and eRF1.	Electron microscopy	3.2	3745	2018-06-06
45	7NFX\|1\|5+ 7NFX\|1\|8	Large subunit ribosomal RNA + 5.8S ribosomal RNA	28S ribosomal RNA, 5.8S ribosomal RNA	Oryctolagus cuniculus	Eukarya	RF02543 + RF00002	Mammalian ribosome nascent chain complex with SRP and SRP receptor in early state A	Electron microscopy	3.2	3649	2021-06-02
46	7TM3\|1\|K+ 7TM3\|1\|v	Large subunit ribosomal RNA + 5.8S ribosomal RNA	28S ribosomal RNA, 5.8S ribosomal RNA	Oryctolagus cuniculus	Eukarya	RF02543 + RF00002	Structure of the rabbit 80S ribosome stalled on a 2-TMD Rhodopsin intermediate in complex with the multipass translocon	Electron microscopy	3.25	3699	2022-10-19
47	8BTK\|1\|B5+ 8BTK\|1\|B8	Large subunit ribosomal RNA + 5.8S ribosomal RNA	28S rRNA, 5.8S rRNA	Oryctolagus cuniculus	Eukarya	RF02543 + RF00002	Structure of the TRAP complex with the Sec translocon and a translating ribosome	Electron microscopy	3.5	3920	2023-05-24
48	9QQB\|1\|B5+ 9QQB\|1\|B8	Large subunit ribosomal RNA + 5.8S ribosomal RNA	28S rRNA, 5.8S rRNA	Oryctolagus cuniculus	Eukarya	RF02543 + RF00002	Quaternary complex of a translating ribosome, NAC, NMT1, and NatA	Electron microscopy	3.43	3920	2025-07-16
49	6T59\|1\|54+ 6T59\|1\|84	Large subunit ribosomal RNA + 5.8S ribosomal RNA	28S ribosomal RNA, 5.8S ribosomal RNA	Oryctolagus cuniculus	Eukarya	RF02543 + RF00002	Structure of rabbit 80S ribosome translating beta-tubulin in complex with tetratricopeptide protein 5 and nascent chain-associated complex	Electron microscopy	3.11	3694	2019-11-27
50	8VFT\|1\|5+ 8VFT\|1\|8	Large subunit ribosomal RNA + 5.8S ribosomal RNA	28S rRNA, 5.8S rRNA	Oryctolagus cuniculus	Eukarya	RF02543 + RF00002	Translating 80S rabbit ribosome stalled by emetine with eEF2	Electron microscopy	3.3	3685	2024-12-25
51	8VVV\|1\|5+ 8VVV\|1\|8	Large subunit ribosomal RNA + 5.8S ribosomal RNA	28S rRNA, 5.8S rRNA	Oryctolagus cuniculus	Eukarya	RF02543 + RF00002	Mammalian ribosomes bound to Anisomycin in the nonrotated conformation	Electron microscopy	3.1	3680	2025-07-30
52	6MTD\|1\|5+ 6MTD\|1\|8	Large subunit ribosomal RNA + 5.8S ribosomal RNA	28S rRNA, 5.8S rRNA	Oryctolagus cuniculus	Eukarya	RF02543 + RF00002	Rabbit 80S ribosome with eEF2 and SERBP1 (unrotated state with 40S head swivel)	Electron microscopy	3.3	3748	2018-11-21
53	5LZS\|1\|5+ 5LZS\|1\|8	Large subunit ribosomal RNA + 5.8S ribosomal RNA	28S ribosomal RNA, 5.8S ribosomal RNA	Oryctolagus cuniculus	Eukarya	RF02543 + RF00002	Structure of the mammalian ribosomal elongation complex with aminoacyl-tRNA, eEF1A, and didemnin B	Electron microscopy	3.31	3694	2016-11-30
54	5LZV\|1\|5+ 5LZV\|1\|8	Large subunit ribosomal RNA + 5.8S ribosomal RNA	28S ribosomal RNA, 5.8S ribosomal RNA	Oryctolagus cuniculus	Eukarya	RF02543 + RF00002	Structure of the mammalian ribosomal termination complex with accommodated eRF1(AAQ) and ABCE1.	Electron microscopy	3.35	3694	2016-11-30
55	7QWS\|1\|5+ 7QWS\|1\|8	Large subunit ribosomal RNA + 5.8S ribosomal RNA	28S rRNA, 5.8S rRNA	Oryctolagus cuniculus	Eukarya	RF02543 + RF00002	Structure of ribosome translating beta-tubulin in complex with TTC5 and NAC	Electron microscopy	3.4	3649	2022-03-09
56	6MTE\|1\|5+ 6MTE\|1\|8	Large subunit ribosomal RNA + 5.8S ribosomal RNA	28S rRNA, 5.8S rRNA	Oryctolagus cuniculus	Eukarya	RF02543 + RF00002	Rabbit 80S ribosome with eEF2 and SERBP1 (rotated state)	Electron microscopy	3.4	3748	2018-11-21
57	6MTC\|1\|5+ 6MTC\|1\|8	Large subunit ribosomal RNA + 5.8S ribosomal RNA	28S rRNA, 5.8S rRNA	Oryctolagus cuniculus	Eukarya	RF02543 + RF00002	Rabbit 80S ribosome with Z-site tRNA and IFRD2 (unrotated state)	Electron microscopy	3.4	3748	2018-11-21
58	6D90\|1\|5+ 6D90\|1\|8	Large subunit ribosomal RNA + 5.8S ribosomal RNA	28S rRNA, 5.8S rRNA	Oryctolagus cuniculus	Eukarya	RF02543 + RF00002	Mammalian 80S ribosome with a double translocated CrPV-IRES, P-site tRNA and eRF1.	Electron microscopy	3.2	3745	2018-06-06
59	6GZ5\|1\|A2+ 6GZ5\|1\|A3	Large subunit ribosomal RNA + 5.8S ribosomal RNA	28S ribosomal RNA, 5.8S ribosomal RNA	Oryctolagus cuniculus	Eukarya	RF02543 + RF00002	tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-3 (TI-POST-3)	Electron microscopy	3.5	3769	2018-12-05
60	5LZZ\|1\|5+ 5LZZ\|1\|8	Large subunit ribosomal RNA + 5.8S ribosomal RNA	28S ribosomal RNA, 5.8S ribosomal RNA	Oryctolagus cuniculus	Eukarya	RF02543 + RF00002	Structure of the mammalian rescue complex with Pelota and Hbs1l (combined)	Electron microscopy	3.47	3694	2016-11-30
61	3JAH\|1\|5+ 3JAH\|1\|8	Large subunit ribosomal RNA + 5.8S ribosomal RNA	28S ribosomal RNA, 5.8S ribosomal RNA	Oryctolagus cuniculus	Eukarya	RF02543 + RF00002	Structure of a mammalian ribosomal termination complex with ABCE1, eRF1(AAQ), and the UAG stop codon	Electron microscopy	3.45	3818	2015-08-12

Release history

Release	3.398
Date	2025-07-30

Parents

This class	Parent classes	Release id	Intersection	Added to this class	Only in parent

Children

This class	Descendant classes	Release id	Intersection	Only in this class	Added to child

Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.

#S	PDB	Title	Method	Resolution	#NTs
1	6D9J\|1\|5+ 6D9J\|1\|8	Mammalian 80S ribosome with a double translocated CrPV-IRES, P-sitetRNA and eRF1.	ELECTRON MICROSCOPY	3.2	3745
2	6D90\|1\|5+ 6D90\|1\|8	Mammalian 80S ribosome with a double translocated CrPV-IRES, P-site tRNA and eRF1.	ELECTRON MICROSCOPY	3.2	3745
3	6P5N\|1\|5+ 6P5N\|1\|8	Structure of a mammalian 80S ribosome in complex with a single translocated Israeli Acute Paralysis Virus IRES and eRF1	ELECTRON MICROSCOPY	3.2	3745
4	5LZZ\|1\|5+ 5LZZ\|1\|8	Structure of the mammalian rescue complex with Pelota and Hbs1l (combined)	ELECTRON MICROSCOPY	3.47	3694
5	8BHF\|1\|A2+ 8BHF\|1\|C2	Cryo-EM structure of stalled rabbit 80S ribosomes in complex with human CCR4-NOT and CNOT4	ELECTRON MICROSCOPY	3.1	3754
6	6SGC\|1\|54+ 6SGC\|1\|84	Rabbit 80S ribosome stalled on a poly(A) tail	ELECTRON MICROSCOPY	2.8	3754
7	7MDZ\|1\|5+ 7MDZ\|1\|8	80S rabbit ribosome stalled with benzamide-CHX	ELECTRON MICROSCOPY	3.2	3692
8	8RJC\|1\|K+ 8RJC\|1\|v	Structure of the rabbit 80S ribosome stalled on a 2-TMD rhodopsin intermediate in complex with Sec61-TRAP, open conformation 1	ELECTRON MICROSCOPY	2.90061	3699
9	8RJD\|1\|K+ 8RJD\|1\|v	Structure of the rabbit 80S ribosome stalled on a 2-TMD rhodopsin intermediate in complex with Sec61-TRAP, open conformation 2	ELECTRON MICROSCOPY	2.78574	3699
10	6MTE\|1\|5+ 6MTE\|1\|8	Rabbit 80S ribosome with eEF2 and SERBP1 (rotated state)	ELECTRON MICROSCOPY	3.4	3748
11	6MTC\|1\|5+ 6MTC\|1\|8	Rabbit 80S ribosome with Z-site tRNA and IFRD2 (unrotated state)	ELECTRON MICROSCOPY	3.4	3748
12	6MTD\|1\|5+ 6MTD\|1\|8	Rabbit 80S ribosome with eEF2 and SERBP1 (unrotated state with 40S head swivel)	ELECTRON MICROSCOPY	3.3	3748
13	8VVV\|1\|5+ 8VVV\|1\|8	Mammalian ribosomes bound to Anisomycin in the nonrotated conformation	ELECTRON MICROSCOPY	3.1	3680
14	8VVT\|1\|WA+ 8VVT\|1\|YA	Mammalian ribosomes bound to Anisomycin in the rotated conformation	ELECTRON MICROSCOPY	2.9	3692
15	5LZS\|1\|5+ 5LZS\|1\|8	Structure of the mammalian ribosomal elongation complex with aminoacyl-tRNA, eEF1A, and didemnin B	ELECTRON MICROSCOPY	3.31	3694
16	5LZV\|1\|5+ 5LZV\|1\|8	Structure of the mammalian ribosomal termination complex with accommodated eRF1(AAQ) and ABCE1.	ELECTRON MICROSCOPY	3.35	3694
17	6R5Q\|1\|5+ 6R5Q\|1\|8	Structure of XBP1u-paused ribosome nascent chain complex (post-state)	ELECTRON MICROSCOPY	3	3694
18	8BPO\|1\|A1+ 8BPO\|1\|C1	Structure of rabbit 80S ribosome translating beta-tubulin in complex with tetratricopeptide protein 5 (TTC5) and S-phase Cyclin A Associated Protein residing in the ER (SCAPER)	ELECTRON MICROSCOPY	2.8	3694
19	7TM3\|1\|K+ 7TM3\|1\|v	Structure of the rabbit 80S ribosome stalled on a 2-TMD Rhodopsin intermediate in complex with the multipass translocon	ELECTRON MICROSCOPY	3.25	3699
20	6T59\|1\|54+ 6T59\|1\|84	Structure of rabbit 80S ribosome translating beta-tubulin in complex with tetratricopeptide protein 5 and nascent chain-associated complex	ELECTRON MICROSCOPY	3.11	3694
21	8SCB\|1\|5+ 8SCB\|1\|8	Terminating ribosome with SRI-41315	ELECTRON MICROSCOPY	2.5	3686
22	8VFT\|1\|5+ 8VFT\|1\|8	Translating 80S rabbit ribosome stalled by emetine with eEF2	ELECTRON MICROSCOPY	3.3	3685
23	6P5J\|1\|5+ 6P5J\|1\|8	Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 2)	ELECTRON MICROSCOPY	3.1	3745
24	6P5I\|1\|5+ 6P5I\|1\|8	Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 1)	ELECTRON MICROSCOPY	3.1	3745
25	6P5K\|1\|5+ 6P5K\|1\|8	Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 3)	ELECTRON MICROSCOPY	3.1	3745
26	8VVQ\|1\|WA+ 8VVQ\|1\|YA	Codon sampling state of elongation inhibitor-treated mammalian ribosomes obtained from merged datasets	ELECTRON MICROSCOPY	2.7	3734
27	8VVP\|1\|WA+ 8VVP\|1\|YA	Codon sampling state obtained from Anisomycin-treated mammalian ribosomes	ELECTRON MICROSCOPY	2.9	3734
28	8VVS\|1\|WA+ 8VVS\|1\|YA	Post-decoding post-hydrolysis state obtained from merged datasets of elongation inhibitor-treated mammalian ribosomes	ELECTRON MICROSCOPY	3.1	3734
29	8VVR\|1\|WA+ 8VVR\|1\|YA	Post-decoding/Post-hydrolysis state obtained from Anisomycin-treated mammalian ribosomes	ELECTRON MICROSCOPY	3.1	3734
30	9BDN\|1\|A28S+ 9BDN\|1\|A58S	80S ribosome with angiogenin and tRNAAla	ELECTRON MICROSCOPY	3.1	3708
31	8RJB\|1\|K+ 8RJB\|1\|v	Structure of the rabbit 80S ribosome stalled on a 2-TMD rhodopsin intermediate in complex with Sec61-RAMP4	ELECTRON MICROSCOPY	2.69243	3699
32	7OYD\|1\|5+ 7OYD\|1\|8	Cryo-EM structure of a rabbit 80S ribosome with zebrafish Dap1b	ELECTRON MICROSCOPY	2.3	3502
33	8B5L\|1\|5+ 8B5L\|1\|8	Cryo-EM structure of ribosome-Sec61-TRAP (TRanslocon Associated Protein) translocon complex	ELECTRON MICROSCOPY	2.86	3770
34	8B6C\|1\|5+ 8B6C\|1\|8	Cryo-EM structure of ribosome-Sec61 in complex with cyclotriazadisulfonamide derivative CK147	ELECTRON MICROSCOPY	2.79	3770
35	7UCJ\|1\|5+ 7UCJ\|1\|8	Mammalian 80S translation initiation complex with mRNA and Harringtonine	ELECTRON MICROSCOPY	3.1	3649
36	7UCK\|1\|5+ 7UCK\|1\|8	80S translation initiation complex with ac4c(-1) mRNA and Harringtonine	ELECTRON MICROSCOPY	2.8	3697
37	7ZJW\|1\|L5+ 7ZJW\|1\|L8	Rabbit 80S ribosome as it decodes the Sec-UGA codon	ELECTRON MICROSCOPY	2.8	3920
38	8BTK\|1\|B5+ 8BTK\|1\|B8	Structure of the TRAP complex with the Sec translocon and a translating ribosome	ELECTRON MICROSCOPY	3.5	3920
39	7ZJX\|1\|L5+ 7ZJX\|1\|L8	Rabbit 80S ribosome programmed with SECIS and SBP2	ELECTRON MICROSCOPY	3.1	3888
40	9F1B\|1\|B5+ 9F1B\|1\|B8	Mammalian ternary complex of a translating 80S ribosome, NAC and NatA/E	ELECTRON MICROSCOPY	3.01	3862
41	8P2K\|1\|B5+ 8P2K\|1\|B8	Ternary complex of translating ribosome, NAC and METAP1	ELECTRON MICROSCOPY	2.9	3920
42	7O7Y\|1\|B5+ 7O7Y\|1\|B8	Rabbit 80S ribosome stalled close to the mutated SARS-CoV-2 slippery site by a pseudoknot (high resolution)	ELECTRON MICROSCOPY	2.2	3920
43	7O7Z\|1\|B5+ 7O7Z\|1\|B8	Rabbit 80S ribosome stalled close to the mutated SARS-CoV-2 slippery site by a pseudoknot (classified for pseudoknot)	ELECTRON MICROSCOPY	2.4	3920
44	9F1D\|1\|B5+ 9F1D\|1\|B8	Mammalian quaternary complex of a translating 80S ribosome, NAC, MetAP1 and NatA/E-HYPK	ELECTRON MICROSCOPY	3.26	3862
45	9QQB\|1\|B5+ 9QQB\|1\|B8	Quaternary complex of a translating ribosome, NAC, NMT1, and NatA	ELECTRON MICROSCOPY	3.43	3920
46	9QQA\|1\|B5+ 9QQA\|1\|B8	Ternary complex of translating ribosome, NAC and NMT1	ELECTRON MICROSCOPY	2.8	3862
47	7O80\|1\|B5+ 7O80\|1\|B8	Rabbit 80S ribosome in complex with eRF1 and ABCE1 stalled at the STOP codon in the mutated SARS-CoV-2 slippery site	ELECTRON MICROSCOPY	2.9	3920
48	9BDL\|1\|A28S+ 9BDL\|1\|A58S	80S ribosome with angiogenin	ELECTRON MICROSCOPY	2.8	3708
49	7TOR\|1\|A28S+ 7TOR\|1\|A58S	Mammalian 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein GR20	ELECTRON MICROSCOPY	2.9	3703
50	7TOQ\|1\|A25S+ 7TOQ\|1\|A58S	Mammalian 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein poly-PR	ELECTRON MICROSCOPY	3.1	3805
51	7O81\|1\|B5+ 7O81\|1\|B8	Rabbit 80S ribosome colliding in another ribosome stalled by the SARS-CoV-2 pseudoknot	ELECTRON MICROSCOPY	3.1	3920
52	7QWS\|1\|5+ 7QWS\|1\|8	Structure of ribosome translating beta-tubulin in complex with TTC5 and NAC	ELECTRON MICROSCOPY	3.4	3649
53	7QWR\|1\|5+ 7QWR\|1\|8	Structure of the ribosome-nascent chain containing an ER signal sequence in complex with NAC	ELECTRON MICROSCOPY	2.9	3649
54	7QWQ\|1\|5+ 7QWQ\|1\|8	Ternary complex of ribosome nascent chain with SRP and NAC	ELECTRON MICROSCOPY	2.83	3649
55	7OBR\|1\|5+ 7OBR\|1\|8	RNC-SRP early complex	ELECTRON MICROSCOPY	2.8	3649
56	7NFX\|1\|5+ 7NFX\|1\|8	Mammalian ribosome nascent chain complex with SRP and SRP receptor in early state A	ELECTRON MICROSCOPY	3.2	3649
57	3JAH\|1\|5+ 3JAH\|1\|8	Structure of a mammalian ribosomal termination complex with ABCE1, eRF1(AAQ), and the UAG stop codon	ELECTRON MICROSCOPY	3.45	3818
58	6R6P\|1\|5+ 6R6P\|1\|8	Structure of XBP1u-paused ribosome nascent chain complex (rotated state)	ELECTRON MICROSCOPY	3.1	3818
59	6ZVK\|1\|e2+ 6ZVK\|1\|h2	The Halastavi arva virus (HalV) intergenic region IRES promotes translation by the simplest possible initiation mechanism	ELECTRON MICROSCOPY	3.49	4076
60	7NWI\|1\|5+ 7NWI\|1\|8	Mammalian pre-termination 80S ribosome with Empty-A site bound by Blasticidin S	ELECTRON MICROSCOPY	3.13	3818
61	6GZ5\|1\|A2+ 6GZ5\|1\|A3	tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-3 (TI-POST-3)	ELECTRON MICROSCOPY	3.5	3769

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.

Coloring options: Nucleotide numbers

Equivalence class NR_3.5_06650.41 Current

Release history

Parents

Children