RNA 3D Hub //

Equivalence class NR_3.5_08031.1 Obsolete

Showing 1 to 9 of 9 entries
#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodRes. Å#NTsDate
18Y7Z|1|C (rep)RNA (21-mer)Escherichia coli 'BL21-Gold(DE3)pLysS AGCryo-EM structure of the monomeric SPARSA gRNA-ssDNA complexElectron microscopy2.57212024-10-16
28Y80|1|CRNA (21-mer)Escherichia coli 'BL21-Gold(DE3)pLysS AGCryo-EM structure of the tetrameric SPARSA gRNA-ssDNA complexElectron microscopy3.38212024-10-16
38Y80|1|GRNA (21-mer)Escherichia coli 'BL21-Gold(DE3)pLysS AGCryo-EM structure of the tetrameric SPARSA gRNA-ssDNA complexElectron microscopy3.38212024-10-16
48Y80|1|KRNA (21-mer)Escherichia coli 'BL21-Gold(DE3)pLysS AGCryo-EM structure of the tetrameric SPARSA gRNA-ssDNA complexElectron microscopy3.38212024-10-16
58Y80|1|ORNA (21-mer)Escherichia coli 'BL21-Gold(DE3)pLysS AGCryo-EM structure of the tetrameric SPARSA gRNA-ssDNA complexElectron microscopy3.38212024-10-16
68Y82|1|CRNA (21-mer)Escherichia coli 'BL21-Gold(DE3)pLysS AGCryo-EM structure of the tetrameric SPARSA gRNA-ssDNA-NAD+ complexElectron microscopy3.4212024-10-16
78Y82|1|GRNA (21-mer)Escherichia coli 'BL21-Gold(DE3)pLysS AGCryo-EM structure of the tetrameric SPARSA gRNA-ssDNA-NAD+ complexElectron microscopy3.4212024-10-16
88Y82|1|KRNA (21-mer)Escherichia coli 'BL21-Gold(DE3)pLysS AGCryo-EM structure of the tetrameric SPARSA gRNA-ssDNA-NAD+ complexElectron microscopy3.4212024-10-16
98Y82|1|ORNA (21-mer)Escherichia coli 'BL21-Gold(DE3)pLysS AGCryo-EM structure of the tetrameric SPARSA gRNA-ssDNA-NAD+ complexElectron microscopy3.4212024-10-16

Release history

Release3.3573.3583.3593.3603.3613.3623.3633.3643.3653.3663.3673.3683.3693.3703.3713.3723.3733.3743.3753.3763.377
Date2024-10-162024-10-232024-10-302024-11-062024-11-132024-11-202024-11-272024-12-042024-12-112024-12-182024-12-252025-01-012025-01-082025-01-152025-01-222025-01-292025-02-052025-02-122025-02-192025-02-262025-03-05

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child

Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.

Showing 1 to 9 of 9 entries
#SViewPDBTitleMethodResolution#NTs
18Y80|1|KCryo-EM structure of the tetrameric SPARSA gRNA-ssDNA complexELECTRON MICROSCOPY3.3821
28Y82|1|KCryo-EM structure of the tetrameric SPARSA gRNA-ssDNA-NAD+ complexELECTRON MICROSCOPY3.421
38Y80|1|CCryo-EM structure of the tetrameric SPARSA gRNA-ssDNA complexELECTRON MICROSCOPY3.3821
48Y82|1|CCryo-EM structure of the tetrameric SPARSA gRNA-ssDNA-NAD+ complexELECTRON MICROSCOPY3.421
58Y80|1|OCryo-EM structure of the tetrameric SPARSA gRNA-ssDNA complexELECTRON MICROSCOPY3.3821
68Y82|1|OCryo-EM structure of the tetrameric SPARSA gRNA-ssDNA-NAD+ complexELECTRON MICROSCOPY3.421
78Y80|1|GCryo-EM structure of the tetrameric SPARSA gRNA-ssDNA complexELECTRON MICROSCOPY3.3821
88Y82|1|GCryo-EM structure of the tetrameric SPARSA gRNA-ssDNA-NAD+ complexELECTRON MICROSCOPY3.421
98Y7Z|1|CCryo-EM structure of the monomeric SPARSA gRNA-ssDNA complexELECTRON MICROSCOPY2.5721

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.

8Y80|1|K:8Y80|1|K = 08Y80|1|K:8Y82|1|K = 0.00028Y80|1|K:8Y80|1|C = 0.00038Y80|1|K:8Y82|1|C = 0.00028Y80|1|K:8Y80|1|O = 0.07088Y80|1|K:8Y82|1|O = 0.07088Y80|1|K:8Y80|1|G = 0.07088Y80|1|K:8Y82|1|G = 0.07088Y80|1|K:8Y7Z|1|C = 0.09898Y82|1|K:8Y80|1|K = 0.00028Y82|1|K:8Y82|1|K = 08Y82|1|K:8Y80|1|C = 0.00028Y82|1|K:8Y82|1|C = 0.00028Y82|1|K:8Y80|1|O = 0.07088Y82|1|K:8Y82|1|O = 0.07088Y82|1|K:8Y80|1|G = 0.07088Y82|1|K:8Y82|1|G = 0.07088Y82|1|K:8Y7Z|1|C = 0.09898Y80|1|C:8Y80|1|K = 0.00038Y80|1|C:8Y82|1|K = 0.00028Y80|1|C:8Y80|1|C = 08Y80|1|C:8Y82|1|C = 0.00028Y80|1|C:8Y80|1|O = 0.07088Y80|1|C:8Y82|1|O = 0.07088Y80|1|C:8Y80|1|G = 0.07088Y80|1|C:8Y82|1|G = 0.07088Y80|1|C:8Y7Z|1|C = 0.09898Y82|1|C:8Y80|1|K = 0.00028Y82|1|C:8Y82|1|K = 0.00028Y82|1|C:8Y80|1|C = 0.00028Y82|1|C:8Y82|1|C = 08Y82|1|C:8Y80|1|O = 0.07088Y82|1|C:8Y82|1|O = 0.07088Y82|1|C:8Y80|1|G = 0.07088Y82|1|C:8Y82|1|G = 0.07088Y82|1|C:8Y7Z|1|C = 0.09898Y80|1|O:8Y80|1|K = 0.07088Y80|1|O:8Y82|1|K = 0.07088Y80|1|O:8Y80|1|C = 0.07088Y80|1|O:8Y82|1|C = 0.07088Y80|1|O:8Y80|1|O = 08Y80|1|O:8Y82|1|O = 0.00018Y80|1|O:8Y80|1|G = 0.00028Y80|1|O:8Y82|1|G = 0.00028Y80|1|O:8Y7Z|1|C = 0.09608Y82|1|O:8Y80|1|K = 0.07088Y82|1|O:8Y82|1|K = 0.07088Y82|1|O:8Y80|1|C = 0.07088Y82|1|O:8Y82|1|C = 0.07088Y82|1|O:8Y80|1|O = 0.00018Y82|1|O:8Y82|1|O = 08Y82|1|O:8Y80|1|G = 0.00028Y82|1|O:8Y82|1|G = 0.00028Y82|1|O:8Y7Z|1|C = 0.09608Y80|1|G:8Y80|1|K = 0.07088Y80|1|G:8Y82|1|K = 0.07088Y80|1|G:8Y80|1|C = 0.07088Y80|1|G:8Y82|1|C = 0.07088Y80|1|G:8Y80|1|O = 0.00028Y80|1|G:8Y82|1|O = 0.00028Y80|1|G:8Y80|1|G = 08Y80|1|G:8Y82|1|G = 0.00028Y80|1|G:8Y7Z|1|C = 0.09608Y82|1|G:8Y80|1|K = 0.07088Y82|1|G:8Y82|1|K = 0.07088Y82|1|G:8Y80|1|C = 0.07088Y82|1|G:8Y82|1|C = 0.07088Y82|1|G:8Y80|1|O = 0.00028Y82|1|G:8Y82|1|O = 0.00028Y82|1|G:8Y80|1|G = 0.00028Y82|1|G:8Y82|1|G = 08Y82|1|G:8Y7Z|1|C = 0.09608Y7Z|1|C:8Y80|1|K = 0.09898Y7Z|1|C:8Y82|1|K = 0.09898Y7Z|1|C:8Y80|1|C = 0.09898Y7Z|1|C:8Y82|1|C = 0.09898Y7Z|1|C:8Y80|1|O = 0.09608Y7Z|1|C:8Y82|1|O = 0.09608Y7Z|1|C:8Y80|1|G = 0.09608Y7Z|1|C:8Y82|1|G = 0.09608Y7Z|1|C:8Y7Z|1|C = 08Y80|1|K8Y82|1|K8Y80|1|C8Y82|1|C8Y80|1|O8Y82|1|O8Y80|1|G8Y82|1|G8Y7Z|1|CDiscrepancy0.000.020.040.060.08

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