#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodRes. ÅDate
17O7Y|1|B7 (rep)5S ribosomal RNA5S rRNAOryctolagus cuniculusEukaryaRF00001Rabbit 80S ribosome stalled close to the mutated SARS-CoV-2 slippery site by a pseudoknot (high resolution)Electron microscopy2.22021-06-02
27OYD|1|K5S ribosomal RNA5S rRNAOryctolagus cuniculusEukaryaRF00001Cryo-EM structure of a rabbit 80S ribosome with zebrafish Dap1bElectron microscopy2.32022-07-20
37O7Z|1|B75S ribosomal RNA5SOryctolagus cuniculusEukaryaRF00001Rabbit 80S ribosome stalled close to the mutated SARS-CoV-2 slippery site by a pseudoknot (classified for pseudoknot)Electron microscopy2.42021-06-02
48B6C|1|75S ribosomal RNA5S rRNAOryctolagus cuniculusEukaryaRF00001Cryo-EM structure of ribosome-Sec61 in complex with cyclotriazadisulfonamide derivative CK147Electron microscopy2.792023-02-22
57UCK|1|75S ribosomal RNA5S rRNAOryctolagus cuniculusEukaryaRF0000180S translation initiation complex with ac4c(-1) mRNA and HarringtonineElectron microscopy2.82022-06-01
68BPO|1|B15S ribosomal RNA5S ribosomal RNAOryctolagus cuniculusEukaryaRF00001Structure of rabbit 80S ribosome translating beta-tubulin in complex with tetratricopeptide protein 5 (TTC5) and S-phase Cyclin A Associated Protein residing in the ER (SCAPER)Electron microscopy2.82023-07-05
77OBR|1|75S ribosomal RNA5S ribosomal RNAOryctolagus cuniculusEukaryaRF00001RNC-SRP early complexElectron microscopy2.82021-07-21
87QWQ|1|75S ribosomal RNA5S ribosomal RNAOryctolagus cuniculusEukaryaRF00001Ternary complex of ribosome nascent chain with SRP and NACElectron microscopy2.832022-03-16
97ZJW|1|L75S ribosomal RNA5S rRNAOryctolagus cuniculusEukaryaRF00001Rabbit 80S ribosome as it decodes the Sec-UGA codonElectron microscopy2.82022-10-19
108B5L|1|75S ribosomal RNA5S rRNAOryctolagus cuniculusEukaryaRF00001Cryo-EM structure of ribosome-Sec61-TRAP (TRanslocon Associated Protein) translocon complexElectron microscopy2.862023-03-01
116SGC|1|745S ribosomal RNA5S ribosomal RNAOryctolagus cuniculusEukaryaRF00001Rabbit 80S ribosome stalled on a poly(A) tailElectron microscopy2.82019-12-04
127QWR|1|75S ribosomal RNA5S ribosomal RNAOryctolagus cuniculusEukaryaRF00001Structure of the ribosome-nascent chain containing an ER signal sequence in complex with NACElectron microscopy2.92022-03-09
138P2K|1|B75S ribosomal RNA5S rRNAOryctolagus cuniculusEukaryaRF00001Ternary complex of translating ribosome, NAC and METAP1Electron microscopy2.92023-07-19
147O80|1|B75S ribosomal RNA5S rRNAOryctolagus cuniculusEukaryaRF00001Rabbit 80S ribosome in complex with eRF1 and ABCE1 stalled at the STOP codon in the mutated SARS-CoV-2 slippery siteElectron microscopy2.92021-06-02
157TOR|1|A5S5S ribosomal RNA5S rRNAOryctolagus cuniculusEukaryaRF00001Mammalian 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein GR20Electron microscopy2.92022-05-25
166R5Q|1|75S ribosomal RNA5S rRNAOryctolagus cuniculusEukaryaRF00001Structure of XBP1u-paused ribosome nascent chain complex (post-state)Electron microscopy32019-07-10
177UCJ|1|75S ribosomal RNA5S rRNAOryctolagus cuniculusEukaryaRF00001Mammalian 80S translation initiation complex with mRNA and HarringtonineElectron microscopy3.12022-06-01
186R6P|1|75S ribosomal RNA5S ribosomal RNAOryctolagus cuniculusEukaryaRF00001Structure of XBP1u-paused ribosome nascent chain complex (rotated state)Electron microscopy3.12019-07-10
197NWI|1|75S ribosomal RNA5S ribosomal RNAOryctolagus cuniculusEukaryaRF00001Mammalian pre-termination 80S ribosome with Empty-A site bound by Blasticidin SElectron microscopy3.132021-07-07
207ZJX|1|L75S ribosomal RNA5S rRNAOryctolagus cuniculusEukaryaRF00001Rabbit 80S ribosome programmed with SECIS and SBP2Electron microscopy3.12022-09-07
216P5K|1|75S ribosomal RNA5S rRNAOryctolagus cuniculusEukaryaRF00001Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 3)Electron microscopy3.12019-09-18
227O81|1|B75S ribosomal RNA5S rRNAOryctolagus cuniculusEukaryaRF00001Rabbit 80S ribosome colliding in another ribosome stalled by the SARS-CoV-2 pseudoknotElectron microscopy3.12021-06-02
237TOQ|1|A5S5S ribosomal RNA5S rRNAOryctolagus cuniculusEukaryaRF00001Mammalian 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein poly-PRElectron microscopy3.12022-05-25
246P5J|1|75S ribosomal RNA5S rRNAOryctolagus cuniculusEukaryaRF00001Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 2)Electron microscopy3.12019-09-18
256P5I|1|75S ribosomal RNA5S rRNAOryctolagus cuniculusEukaryaRF00001Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 1)Electron microscopy3.12019-09-18
266T59|1|745S ribosomal RNA5S ribosomal RNAOryctolagus cuniculusEukaryaRF00001Structure of rabbit 80S ribosome translating beta-tubulin in complex with tetratricopeptide protein 5 and nascent chain-associated complexElectron microscopy3.112019-11-27
277NFX|1|75S ribosomal RNA5S ribosomal RNAOryctolagus cuniculusEukaryaRF00001Mammalian ribosome nascent chain complex with SRP and SRP receptor in early state AElectron microscopy3.22021-06-02
286P5N|1|75S ribosomal RNA5S rRNAOryctolagus cuniculusEukaryaRF00001Structure of a mammalian 80S ribosome in complex with a single translocated Israeli Acute Paralysis Virus IRES and eRF1Electron microscopy3.22019-09-25
297MDZ|1|75S ribosomal RNA5S rRNAOryctolagus cuniculusEukaryaRF0000180S rabbit ribosome stalled with benzamide-CHXElectron microscopy3.22021-09-01
307TM3|1|u5S ribosomal RNA5S ribosomal RNAOryctolagus cuniculusEukaryaRF00001Structure of the rabbit 80S ribosome stalled on a 2-TMD Rhodopsin intermediate in complex with the multipass transloconElectron microscopy3.252022-10-19
316D9J|1|75S ribosomal RNA5S rRNAOryctolagus cuniculusEukaryaRF00001Mammalian 80S ribosome with a double translocated CrPV-IRES, P-sitetRNA and eRF1.Electron microscopy3.22018-06-06
325LZS|1|75S ribosomal RNA5S ribosomal RNAOryctolagus cuniculusEukaryaRF00001Structure of the mammalian ribosomal elongation complex with aminoacyl-tRNA, eEF1A, and didemnin BElectron microscopy3.312016-11-30
335LZV|1|75S ribosomal RNA5S ribosomal RNAOryctolagus cuniculusEukaryaRF00001Structure of the mammalian ribosomal termination complex with accommodated eRF1(AAQ) and ABCE1.Electron microscopy3.352016-11-30
346MTD|1|75S ribosomal RNA5S rRNAOryctolagus cuniculusEukaryaRF00001Rabbit 80S ribosome with eEF2 and SERBP1 (unrotated state with 40S head swivel)Electron microscopy3.32018-11-21
357QWS|1|75S ribosomal RNA5S rRNAOryctolagus cuniculusEukaryaRF00001Structure of ribosome translating beta-tubulin in complex with TTC5 and NACElectron microscopy3.42022-03-09
366ZVK|1|d25S ribosomal RNA5S RIBOSOMAL RNAOryctolagus cuniculusEukaryaRF00001The Halastavi arva virus (HalV) intergenic region IRES promotes translation by the simplest possible initiation mechanismElectron microscopy3.492020-12-23
376MTE|1|75S ribosomal RNA5S rRNAOryctolagus cuniculusEukaryaRF00001Rabbit 80S ribosome with eEF2 and SERBP1 (rotated state)Electron microscopy3.42018-11-21
385LZZ|1|75S ribosomal RNA5S ribosomal RNAOryctolagus cuniculusEukaryaRF00001Structure of the mammalian rescue complex with Pelota and Hbs1l (combined)Electron microscopy3.472016-11-30
396MTC|1|75S ribosomal RNA5S rRNAOryctolagus cuniculusEukaryaRF00001Rabbit 80S ribosome with Z-site tRNA and IFRD2 (unrotated state)Electron microscopy3.42018-11-21
408BTK|1|B75S ribosomal RNA5S rRNAOryctolagus cuniculusEukaryaRF00001Structure of the TRAP complex with the Sec translocon and a translating ribosomeElectron microscopy3.52023-05-24
416D90|1|75S ribosomal RNA5S rRNAOryctolagus cuniculusEukaryaRF00001Mammalian 80S ribosome with a double translocated CrPV-IRES, P-site tRNA and eRF1.Electron microscopy3.22018-06-06
426GZ5|1|A45S ribosomal RNA5S ribosomal RNAOryctolagus cuniculusEukaryaRF00001tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-3 (TI-POST-3)Electron microscopy3.52018-12-05
433JAH|1|75S ribosomal RNA5S ribosomal RNAOryctolagus cuniculusEukaryaRF00001Structure of a mammalian ribosomal termination complex with ABCE1, eRF1(AAQ), and the UAG stop codonElectron microscopy3.452015-08-12

Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.

#SViewPDBTitleMethodResolutionLength
16ZVK|1|d2The Halastavi arva virus (HalV) intergenic region IRES promotes translation by the simplest possible initiation mechanismELECTRON MICROSCOPY3.49120
26GZ5|1|A4tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-3 (TI-POST-3)ELECTRON MICROSCOPY3.5119
37QWS|1|7Structure of ribosome translating beta-tubulin in complex with TTC5 and NACELECTRON MICROSCOPY3.4120
47QWR|1|7Structure of the ribosome-nascent chain containing an ER signal sequence in complex with NACELECTRON MICROSCOPY2.9120
57QWQ|1|7Ternary complex of ribosome nascent chain with SRP and NACELECTRON MICROSCOPY2.83120
67OBR|1|7RNC-SRP early complexELECTRON MICROSCOPY2.8120
77NFX|1|7Mammalian ribosome nascent chain complex with SRP and SRP receptor in early state AELECTRON MICROSCOPY3.2120
86R6P|1|7Structure of XBP1u-paused ribosome nascent chain complex (rotated state)ELECTRON MICROSCOPY3.1120
96R5Q|1|7Structure of XBP1u-paused ribosome nascent chain complex (post-state)ELECTRON MICROSCOPY3120
107TOQ|1|A5SMammalian 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein poly-PRELECTRON MICROSCOPY3.1120
117TOR|1|A5SMammalian 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein GR20ELECTRON MICROSCOPY2.9120
128BPO|1|B1Structure of rabbit 80S ribosome translating beta-tubulin in complex with tetratricopeptide protein 5 (TTC5) and S-phase Cyclin A Associated Protein residing in the ER (SCAPER)ELECTRON MICROSCOPY2.8120
137TM3|1|uStructure of the rabbit 80S ribosome stalled on a 2-TMD Rhodopsin intermediate in complex with the multipass transloconELECTRON MICROSCOPY3.25120
146MTE|1|7Rabbit 80S ribosome with eEF2 and SERBP1 (rotated state)ELECTRON MICROSCOPY3.4120
156MTD|1|7Rabbit 80S ribosome with eEF2 and SERBP1 (unrotated state with 40S head swivel)ELECTRON MICROSCOPY3.3120
166MTC|1|7Rabbit 80S ribosome with Z-site tRNA and IFRD2 (unrotated state)ELECTRON MICROSCOPY3.4120
177MDZ|1|780S rabbit ribosome stalled with benzamide-CHXELECTRON MICROSCOPY3.2119
183JAH|1|7Structure of a mammalian ribosomal termination complex with ABCE1, eRF1(AAQ), and the UAG stop codonELECTRON MICROSCOPY3.45120
195LZZ|1|7Structure of the mammalian rescue complex with Pelota and Hbs1l (combined)ELECTRON MICROSCOPY3.47120
205LZS|1|7Structure of the mammalian ribosomal elongation complex with aminoacyl-tRNA, eEF1A, and didemnin BELECTRON MICROSCOPY3.31119
215LZV|1|7Structure of the mammalian ribosomal termination complex with accommodated eRF1(AAQ) and ABCE1.ELECTRON MICROSCOPY3.35120
226T59|1|74Structure of rabbit 80S ribosome translating beta-tubulin in complex with tetratricopeptide protein 5 and nascent chain-associated complexELECTRON MICROSCOPY3.11120
236P5J|1|7Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 2)ELECTRON MICROSCOPY3.1119
246P5I|1|7Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 1)ELECTRON MICROSCOPY3.1119
256P5K|1|7Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 3)ELECTRON MICROSCOPY3.1119
267ZJX|1|L7Rabbit 80S ribosome programmed with SECIS and SBP2ELECTRON MICROSCOPY3.1119
277O81|1|B7Rabbit 80S ribosome colliding in another ribosome stalled by the SARS-CoV-2 pseudoknotELECTRON MICROSCOPY3.1119
288P2K|1|B7Ternary complex of translating ribosome, NAC and METAP1ELECTRON MICROSCOPY2.9119
298BTK|1|B7Structure of the TRAP complex with the Sec translocon and a translating ribosomeELECTRON MICROSCOPY3.5119
307O80|1|B7Rabbit 80S ribosome in complex with eRF1 and ABCE1 stalled at the STOP codon in the mutated SARS-CoV-2 slippery siteELECTRON MICROSCOPY2.9119
317O7Y|1|B7Rabbit 80S ribosome stalled close to the mutated SARS-CoV-2 slippery site by a pseudoknot (high resolution)ELECTRON MICROSCOPY2.2119
327O7Z|1|B7Rabbit 80S ribosome stalled close to the mutated SARS-CoV-2 slippery site by a pseudoknot (classified for pseudoknot)ELECTRON MICROSCOPY2.4119
336SGC|1|74Rabbit 80S ribosome stalled on a poly(A) tailELECTRON MICROSCOPY2.8119
347ZJW|1|L7Rabbit 80S ribosome as it decodes the Sec-UGA codonELECTRON MICROSCOPY2.8119
357OYD|1|KCryo-EM structure of a rabbit 80S ribosome with zebrafish Dap1bELECTRON MICROSCOPY2.3119
368B5L|1|7Cryo-EM structure of ribosome-Sec61-TRAP (TRanslocon Associated Protein) translocon complexELECTRON MICROSCOPY2.86120
378B6C|1|7Cryo-EM structure of ribosome-Sec61 in complex with cyclotriazadisulfonamide derivative CK147ELECTRON MICROSCOPY2.79120
387UCK|1|780S translation initiation complex with ac4c(-1) mRNA and HarringtonineELECTRON MICROSCOPY2.8120
397UCJ|1|7Mammalian 80S translation initiation complex with mRNA and HarringtonineELECTRON MICROSCOPY3.1120
406P5N|1|7Structure of a mammalian 80S ribosome in complex with a single translocated Israeli Acute Paralysis Virus IRES and eRF1ELECTRON MICROSCOPY3.2119
416D90|1|7Mammalian 80S ribosome with a double translocated CrPV-IRES, P-site tRNA and eRF1.ELECTRON MICROSCOPY3.2119
427NWI|1|7Mammalian pre-termination 80S ribosome with Empty-A site bound by Blasticidin SELECTRON MICROSCOPY3.13120
436D9J|1|7Mammalian 80S ribosome with a double translocated CrPV-IRES, P-sitetRNA and eRF1.ELECTRON MICROSCOPY3.2119

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.


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