RNA 3D Hub //

Equivalence class NR_3.5_12406.7 Current

#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodRes. Å#NTsDate
19KN5|1|zz (rep)Internal ribosome entry siteChains: zzHepacivirus hominisVirusesRF00061Structure of the human 40S ribosome complexed with HCV IRES, eIF1A and eIF3Electron microscopy3.23022025-12-03
29KN6|1|zzInternal ribosome entry siteHCV-IRES RNAHepacivirus hominisVirusesRF00061Structure of the HCV IRES-dependent pre-48S translation initiation complex with eIF1A, eIF5B, and eIF3Electron microscopy3.33062025-12-03
39KKF|1|zzInternal ribosome entry siteHCV-IRES RNAHepacivirus hominisVirusesRF00061Structure of the human 40S ribosome complexed with HCV IRES and eIF3Electron microscopy3.33022025-12-03
49KZU|1|zzInternal ribosome entry siteHCV IRESHepacivirus hominisVirusesRF00061Cryo-EM structure of the HCV IRES-dependently initiated CMV-stalled 80S ribosome (non-rotated state) in complexed with eIF3Electron microscopy32102025-12-03
59KRP|1|zzInternal ribosome entry siteHCV IRESHepacivirus hominisVirusesRF00061Structure of the HCV IRES-dependent 48S translation initiation complex with eIF5B and eIF3Electron microscopy3.23132025-12-03
67SYS|1|zInternal ribosome entry siteHCV IRESHepatitis C virus (isolate 1)VirusesRF00061Structure of the delta dII IRES eIF2-containing 48S initiation complex, closed conformation. Structure 12(delta dII).Electron microscopy3.51882022-07-27
79KZX|1|zzInternal ribosome entry siteHCV IRESHepacivirus hominisVirusesRF00061Cryo-EM structure of the HCV IRES-dependently initiated CMV-stalled 80S ribosome (rotated state) in complexed with eIF3Electron microscopy3.32112025-12-03

Release history

Release4.16
Date2025-12-03

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child

Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.

#SViewPDBTitleMethodResolution#NTs
19KN6|1|zzStructure of the HCV IRES-dependent pre-48S translation initiation complex with eIF1A, eIF5B, and eIF3ELECTRON MICROSCOPY3.3306
29KN5|1|zzStructure of the human 40S ribosome complexed with HCV IRES, eIF1A and eIF3ELECTRON MICROSCOPY3.2302
39KKF|1|zzStructure of the human 40S ribosome complexed with HCV IRES and eIF3ELECTRON MICROSCOPY3.3302
49KZX|1|zzCryo-EM structure of the HCV IRES-dependently initiated CMV-stalled 80S ribosome (rotated state) in complexed with eIF3ELECTRON MICROSCOPY3.3211
59KZU|1|zzCryo-EM structure of the HCV IRES-dependently initiated CMV-stalled 80S ribosome (non-rotated state) in complexed with eIF3ELECTRON MICROSCOPY3210
69KRP|1|zzStructure of the HCV IRES-dependent 48S translation initiation complex with eIF5B and eIF3ELECTRON MICROSCOPY3.2313
77SYS|1|zStructure of the delta dII IRES eIF2-containing 48S initiation complex, closed conformation. Structure 12(delta dII).ELECTRON MICROSCOPY3.5188

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.


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