#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodRes. Å#NTsDate
17QI4|1|A (rep)Large subunit ribosomal RNA16S mitochondrial rRNAHomo sapiensMitochondriaRF02541Human mitochondrial ribosome at 2.2 A resolutionElectron microscopy2.2115582022-07-13
28RRI|1|ALarge subunit ribosomal RNA16S mitochondrial rRNAHomo sapiensMitochondriaRF02541Human mitochondrial ribosome in complex with antibiotic tigecyclineElectron microscopy2.415512025-03-12
36ZM6|1|ALarge subunit ribosomal RNA16S mitochondrial rRNAHomo sapiensMitochondriaRF02541Human mitochondrial ribosome in complex with mRNA, A/A tRNA and P/P tRNAElectron microscopy2.5915312021-01-13
47OF0|1|ALarge subunit ribosomal RNA16S ribosomal RNAHomo sapiensMitochondriaRF02541Structure of a human mitochondrial ribosome large subunit assembly intermediate in complex with MTERF4-NSUN4 (dataset1).Electron microscopy2.213762021-06-09
57QI5|1|ALarge subunit ribosomal RNA16S mitochondrial rRNAHomo sapiensMitochondriaRF02541Human mitochondrial ribosome in complex with mRNA, A/A-, P/P- and E/E-tRNAs at 2.63 A resolutionElectron microscopy2.6315582023-07-05
67O9M|1|ALarge subunit ribosomal RNA16S rRNAHomo sapiensMitochondriaRF02541Human mitochondrial ribosome large subunit assembly intermediate with MTERF4-NSUN4, MRM2, MTG1 and the MALSU moduleElectron microscopy2.514542021-06-30
77OF6|1|ALarge subunit ribosomal RNA16S ribosomal RNAHomo sapiensMitochondriaRF02541Structure of mature human mitochondrial ribosome large subunit in complex with GTPBP6 (PTC conformation 2).Electron microscopy2.614632021-06-09
88ANY|1|ALarge subunit ribosomal RNA16S mitochondrial rRNAHomo sapiensMitochondriaRF02541Human mitochondrial ribosome in complex with LRPPRC, SLIRP, A-site, P-site, E-site tRNAs and mRNAElectron microscopy2.8515582023-08-16
98OIT|1|B8Large subunit ribosomal RNA16S rRNAHomo sapiensMitochondriaRF0254139S human mitochondrial large ribosomal subunit with mtRF1 and P-site tRNAElectron microscopy2.915582023-06-14
107OF4|1|ALarge subunit ribosomal RNA16S ribosomal RNAHomo sapiensMitochondriaRF02541Structure of mature human mitochondrial ribosome large subunit in complex with GTPBP6 (PTC conformation 1).Electron microscopy2.714632021-06-09
116ZM5|1|ALarge subunit ribosomal RNA16S mitochondrial rRNAHomo sapiensMitochondriaRF02541Human mitochondrial ribosome in complex with OXA1L, mRNA, A/A tRNA, P/P tRNA and nascent polypeptideElectron microscopy2.8915342021-01-13
127OF7|1|ALarge subunit ribosomal RNA16S ribosomal RNAHomo sapiensMitochondriaRF02541Structure of a human mitochondrial ribosome large subunit assembly intermediate in complex with MTERF4-NSUN4 and GTPBP5 (dataset1).Electron microscopy2.513762021-06-23
137QI6|1|ALarge subunit ribosomal RNA16S mitochondrial rRNAHomo sapiensMitochondriaRF02541Human mitochondrial ribosome in complex with mRNA, A/P- and P/E-tRNAs at 2.98 A resolutionElectron microscopy2.9815582023-05-17
146VMI|1|ALarge subunit ribosomal RNA16s rRNAHomo sapiensMitochondriaRF02541Structure of the human mitochondrial ribosome-EF-G1 complex (ClassIII)Electron microscopy2.9615272020-08-05
158K2A|1|L1Large subunit ribosomal RNA16S rRNAHomo sapiensMitochondriaRF02541Cryo-EM structure of the human 55S mitoribosome with TigecyclineElectron microscopy2.915002024-07-10
166VLZ|1|ALarge subunit ribosomal RNA16s rRNAHomo sapiensMitochondriaRF02541Structure of the human mitochondrial ribosome-EF-G1 complex (ClassI)Electron microscopy2.9715272020-08-05
177OF2|1|ALarge subunit ribosomal RNA16S ribosomal RNAHomo sapiensMitochondriaRF02541Structure of a human mitochondrial ribosome large subunit assembly intermediate in complex with GTPBP6.Electron microscopy2.714102021-06-02
188OIR|1|B8Large subunit ribosomal RNA16S rRNAHomo sapiensMitochondriaRF0254155S human mitochondrial ribosome with mtRF1 and P-site tRNAElectron microscopy3.115582023-06-14
197OF3|1|ALarge subunit ribosomal RNA16S ribosomal RNAHomo sapiensMitochondriaRF02541Structure of a human mitochondrial ribosome large subunit assembly intermediate in complex with MTERF4-NSUN4 (dataset2).Electron microscopy2.713862021-05-19
207ODR|1|ALarge subunit ribosomal RNA16S mitochondrial rRNA, DNA (31-MER),16S mitochondrial rRNAHomo sapiensMitochondriaRF02541State A of the human mitoribosomal large subunit assembly intermediateElectron microscopy2.914482021-06-23
217L20|1|ALarge subunit ribosomal RNA16S rRNA mitochondrialHomo sapiensMitochondriaRF02541Cryo-EM structure of the human 39S mitoribosomal subunit in complex with RRFmt and EF-G2mt.Electron microscopy3.1515272021-05-12
228XT1|1|L1Large subunit ribosomal RNA16s rRNAHomo sapiensMitochondriaRF02541Cryo-EM structure of the human 39S mitoribosome with 5uM TigecyclineElectron microscopy3.115002024-07-10
238XT3|1|L1Large subunit ribosomal RNA16s rRNAHomo sapiensMitochondriaRF02541Cryo-EM structure of the human 39S mitoribosome with 10uM TigecyclineElectron microscopy3.115002024-07-10
247A5J|1|ALarge subunit ribosomal RNA16S rRNAHomo sapiensMitochondriaRF02541Structure of the split human mitoribosomal large subunit with P-and E-site mt-tRNAsElectron microscopy3.114922020-12-23
257OF5|1|ALarge subunit ribosomal RNA16S ribosomal RNAHomo sapiensMitochondriaRF02541Structure of a human mitochondrial ribosome large subunit assembly intermediate in complex with MTERF4-NSUN4 and GTPBP5 (dataset2).Electron microscopy2.913892021-06-09
268XT0|1|L1Large subunit ribosomal RNA16s rRNAHomo sapiensMitochondriaRF02541Cryo-EM structure of the human 55S mitoribosome with 5um TigecyclineElectron microscopy3.215002024-07-10
278QSJ|1|ALarge subunit ribosomal RNA16S rRNAHomo sapiensMitochondriaRF02541Human mitoribosomal large subunit assembly intermediate 2 with GTPBP7Electron microscopy314182023-12-13
287ODT|1|ALarge subunit ribosomal RNA16S mitochondrial rRNAHomo sapiensMitochondriaRF02541State C of the human mitoribosomal large subunit assembly intermediateElectron microscopy3.114532021-06-23
298PK0|1|ALarge subunit ribosomal RNA16S rRNA + pre-H68-71 segmentHomo sapiensMitochondriaRF02541human mitoribosomal large subunit assembly intermediate 1 with GTPBP10-GTPBP7Electron microscopy3.0314232023-12-13
307ODS|1|ALarge subunit ribosomal RNA16S mitochondrial rRNA, DNA (30-MER),16S mitochondrial rRNAHomo sapiensMitochondriaRF02541State B of the human mitoribosomal large subunit assembly intermediateElectron microscopy3.114452021-06-23
317O9K|1|ALarge subunit ribosomal RNA16S rRNAHomo sapiensMitochondriaRF02541Human mitochondrial ribosome large subunit assembly intermediate with MTERF4-NSUN4, MRM2, MTG1, the MALSU module, GTPBP5 and mtEF-TuElectron microscopy3.114362021-06-30
328XT2|1|L1Large subunit ribosomal RNA16s rRNAHomo sapiensMitochondriaRF02541Cryo-EM structure of the human 55S mitoribosome with 10uM TigecyclineElectron microscopy3.315002024-07-10
335OOL|1|ALarge subunit ribosomal RNA16S ribosomal RNAHomo sapiensMitochondriaRF02541Structure of a native assembly intermediate of the human mitochondrial ribosome with unfolded interfacial rRNAElectron microscopy3.0614412017-09-13
348K2B|1|L1Large subunit ribosomal RNA16s rRNAHomo sapiensMitochondriaRF02541Cryo-EM structure of the human 39S mitoribosome with TigecyclineElectron microscopy3.415002024-07-10
357OIC|1|ALarge subunit ribosomal RNA16S rRNAHomo sapiensMitochondriaRF02541Cryo-EM structure of late human 39S mitoribosome assembly intermediates, state 4Electron microscopy3.113832021-09-15
367A5H|1|ALarge subunit ribosomal RNA16S rRNAHomo sapiensMitochondriaRF02541Structure of the split human mitoribosomal large subunit with rescue factors mtRF-R and MTRES1Electron microscopy3.314572020-12-23
377L08|1|ALarge subunit ribosomal RNA16S RRNAHomo sapiensMitochondriaRF02541Cryo-EM structure of the human 55S mitoribosome-RRFmt complex.Electron microscopy3.4915272021-05-12
387PO4|1|ALarge subunit ribosomal RNA16SrRNAHomo sapiensMitochondriaRF02541Assembly intermediate of human mitochondrial ribosome large subunit (largely unfolded rRNA with MALSU1, L0R8F8 and ACP)Electron microscopy2.5611452022-06-15
397QH7|1|ALarge subunit ribosomal RNA16S ribosomal RNAHomo sapiensEukaryaRF02541Cryo-EM structure of the human mtLSU assembly intermediate upon MRM2 depletion - class 4Electron microscopy2.8912562022-05-18
407OIE|1|ALarge subunit ribosomal RNA16S rRNAHomo sapiensMitochondriaRF02541Cryo-EM structure of late human 39S mitoribosome assembly intermediates, state 5BElectron microscopy3.514722021-09-15
418QU5|1|ALarge subunit ribosomal RNA16S ribosomal RNAHomo sapiensEukaryaRF02541mt-LSU assembly intermediate in GTPBP8 knock-out cells, state 2Electron microscopy2.4210492024-06-26
426ZSC|1|XALarge subunit ribosomal RNA16S rRNAHomo sapiensMitochondriaRF02541Human mitochondrial ribosome in complex with E-site tRNAElectron microscopy3.515012020-09-16
437PD3|1|ALarge subunit ribosomal RNA16S rRNAHomo sapiensMitochondriaRF02541Structure of the human mitoribosomal large subunit in complex with NSUN4.MTERF4.GTPBP7 and MALSU1.L0R8F8.mt-ACPElectron microscopy3.412802021-11-17
447QH6|1|ALarge subunit ribosomal RNA16S ribosomal RNAHomo sapiensEukaryaRF02541Cryo-EM structure of the human mtLSU assembly intermediate upon MRM2 depletion - class 1Electron microscopy3.0811332022-03-02
453J9M|1|ALarge subunit ribosomal RNA16S rRNAHomo sapiensMitochondriaRF02541Structure of the human mitochondrial ribosome (class 1)Electron microscopy3.514722015-04-15
465OOM|1|ALarge subunit ribosomal RNA16S ribosomal RNAHomo sapiensMitochondriaRF02541Structure of a native assembly intermediate of the human mitochondrial ribosome with unfolded interfacial rRNAElectron microscopy3.0310922017-09-13
477OIA|1|ALarge subunit ribosomal RNA16S rRNAHomo sapiensMitochondriaRF02541Cryo-EM structure of late human 39S mitoribosome assembly intermediates, state 3CElectron microscopy3.210922021-09-15
483J7Y|1|ALarge subunit ribosomal RNA16S rRNAHomo sapiensMitochondriaRF02541Structure of the large ribosomal subunit from human mitochondriaElectron microscopy3.414722014-10-15
498QU1|1|ALarge subunit ribosomal RNA16S ribosomal RNAHomo sapiensEukaryaRF02541mt-LSU assembly intermediate in GTPBP8 knock-out cells, state 1Electron microscopy2.749382024-06-26
507OIB|1|ALarge subunit ribosomal RNA16S rRNAHomo sapiensMitochondriaRF02541Cryo-EM structure of late human 39S mitoribosome assembly intermediates, state 3DElectron microscopy3.310922021-09-15
517OI9|1|ALarge subunit ribosomal RNA16S rRNAHomo sapiensMitochondriaRF02541Cryo-EM structure of late human 39S mitoribosome assembly intermediates, state 3BElectron microscopy3.310922021-09-15
527OI8|1|ALarge subunit ribosomal RNA16S rRNAHomo sapiensMitochondriaRF02541Cryo-EM structure of late human 39S mitoribosome assembly intermediates, state 3AElectron microscopy3.510922021-09-15
537OI7|1|ALarge subunit ribosomal RNA16S rRNAHomo sapiensMitochondriaRF02541Cryo-EM structure of late human 39S mitoribosome assembly intermediates, state 2Electron microscopy3.510542021-09-15

Release history

Release3.3783.3793.3803.3813.3823.383
Date2025-03-132025-03-192025-03-262025-04-022025-04-092025-04-16

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child

Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.

#SViewPDBTitleMethodResolution#NTs
16VMI|1|AStructure of the human mitochondrial ribosome-EF-G1 complex (ClassIII)ELECTRON MICROSCOPY2.961527
26VLZ|1|AStructure of the human mitochondrial ribosome-EF-G1 complex (ClassI)ELECTRON MICROSCOPY2.971527
37L08|1|ACryo-EM structure of the human 55S mitoribosome-RRFmt complex.ELECTRON MICROSCOPY3.491527
47L20|1|ACryo-EM structure of the human 39S mitoribosomal subunit in complex with RRFmt and EF-G2mt.ELECTRON MICROSCOPY3.151527
57OF4|1|AStructure of mature human mitochondrial ribosome large subunit in complex with GTPBP6 (PTC conformation 1).ELECTRON MICROSCOPY2.71463
67OF6|1|AStructure of mature human mitochondrial ribosome large subunit in complex with GTPBP6 (PTC conformation 2).ELECTRON MICROSCOPY2.61463
78OIR|1|B855S human mitochondrial ribosome with mtRF1 and P-site tRNAELECTRON MICROSCOPY3.11558
88OIT|1|B839S human mitochondrial large ribosomal subunit with mtRF1 and P-site tRNAELECTRON MICROSCOPY2.91558
97QI4|1|AHuman mitochondrial ribosome at 2.2 A resolutionELECTRON MICROSCOPY2.211558
107QI5|1|AHuman mitochondrial ribosome in complex with mRNA, A/A-, P/P- and E/E-tRNAs at 2.63 A resolutionELECTRON MICROSCOPY2.631558
118ANY|1|AHuman mitochondrial ribosome in complex with LRPPRC, SLIRP, A-site, P-site, E-site tRNAs and mRNAELECTRON MICROSCOPY2.851558
126ZM5|1|AHuman mitochondrial ribosome in complex with OXA1L, mRNA, A/A tRNA, P/P tRNA and nascent polypeptideELECTRON MICROSCOPY2.891534
136ZM6|1|AHuman mitochondrial ribosome in complex with mRNA, A/A tRNA and P/P tRNAELECTRON MICROSCOPY2.591531
147QI6|1|AHuman mitochondrial ribosome in complex with mRNA, A/P- and P/E-tRNAs at 2.98 A resolutionELECTRON MICROSCOPY2.981558
156ZSC|1|XAHuman mitochondrial ribosome in complex with E-site tRNAELECTRON MICROSCOPY3.51501
168RRI|1|AHuman mitochondrial ribosome in complex with antibiotic tigecyclineELECTRON MICROSCOPY2.41551
178XT0|1|L1Cryo-EM structure of the human 55S mitoribosome with 5um TigecyclineELECTRON MICROSCOPY3.21500
188XT2|1|L1Cryo-EM structure of the human 55S mitoribosome with 10uM TigecyclineELECTRON MICROSCOPY3.31500
198K2A|1|L1Cryo-EM structure of the human 55S mitoribosome with TigecyclineELECTRON MICROSCOPY2.91500
208K2B|1|L1Cryo-EM structure of the human 39S mitoribosome with TigecyclineELECTRON MICROSCOPY3.41500
218XT1|1|L1Cryo-EM structure of the human 39S mitoribosome with 5uM TigecyclineELECTRON MICROSCOPY3.11500
228XT3|1|L1Cryo-EM structure of the human 39S mitoribosome with 10uM TigecyclineELECTRON MICROSCOPY3.11500
233J7Y|1|AStructure of the large ribosomal subunit from human mitochondriaELECTRON MICROSCOPY3.41472
243J9M|1|AStructure of the human mitochondrial ribosome (class 1)ELECTRON MICROSCOPY3.51472
255OOL|1|AStructure of a native assembly intermediate of the human mitochondrial ribosome with unfolded interfacial rRNAELECTRON MICROSCOPY3.061441
267A5J|1|AStructure of the split human mitoribosomal large subunit with P-and E-site mt-tRNAsELECTRON MICROSCOPY3.11492
277A5H|1|AStructure of the split human mitoribosomal large subunit with rescue factors mtRF-R and MTRES1ELECTRON MICROSCOPY3.31457
287OIE|1|ACryo-EM structure of late human 39S mitoribosome assembly intermediates, state 5BELECTRON MICROSCOPY3.51472
297OIC|1|ACryo-EM structure of late human 39S mitoribosome assembly intermediates, state 4ELECTRON MICROSCOPY3.11383
307OF2|1|AStructure of a human mitochondrial ribosome large subunit assembly intermediate in complex with GTPBP6.ELECTRON MICROSCOPY2.71410
317OF5|1|AStructure of a human mitochondrial ribosome large subunit assembly intermediate in complex with MTERF4-NSUN4 and GTPBP5 (dataset2).ELECTRON MICROSCOPY2.91389
327OF7|1|AStructure of a human mitochondrial ribosome large subunit assembly intermediate in complex with MTERF4-NSUN4 and GTPBP5 (dataset1).ELECTRON MICROSCOPY2.51376
337ODT|1|AState C of the human mitoribosomal large subunit assembly intermediateELECTRON MICROSCOPY3.11453
348QSJ|1|AHuman mitoribosomal large subunit assembly intermediate 2 with GTPBP7ELECTRON MICROSCOPY31418
357QH7|1|ACryo-EM structure of the human mtLSU assembly intermediate upon MRM2 depletion - class 4ELECTRON MICROSCOPY2.891256
367OF0|1|AStructure of a human mitochondrial ribosome large subunit assembly intermediate in complex with MTERF4-NSUN4 (dataset1).ELECTRON MICROSCOPY2.21376
377OF3|1|AStructure of a human mitochondrial ribosome large subunit assembly intermediate in complex with MTERF4-NSUN4 (dataset2).ELECTRON MICROSCOPY2.71386
387ODR|1|AState A of the human mitoribosomal large subunit assembly intermediateELECTRON MICROSCOPY2.91448
397ODS|1|AState B of the human mitoribosomal large subunit assembly intermediateELECTRON MICROSCOPY3.11445
407O9M|1|AHuman mitochondrial ribosome large subunit assembly intermediate with MTERF4-NSUN4, MRM2, MTG1 and the MALSU moduleELECTRON MICROSCOPY2.51454
418QU1|1|Amt-LSU assembly intermediate in GTPBP8 knock-out cells, state 1ELECTRON MICROSCOPY2.74938
427PO4|1|AAssembly intermediate of human mitochondrial ribosome large subunit (largely unfolded rRNA with MALSU1, L0R8F8 and ACP)ELECTRON MICROSCOPY2.561145
438QU5|1|Amt-LSU assembly intermediate in GTPBP8 knock-out cells, state 2ELECTRON MICROSCOPY2.421049
445OOM|1|AStructure of a native assembly intermediate of the human mitochondrial ribosome with unfolded interfacial rRNAELECTRON MICROSCOPY3.031092
457OIB|1|ACryo-EM structure of late human 39S mitoribosome assembly intermediates, state 3DELECTRON MICROSCOPY3.31092
467OIA|1|ACryo-EM structure of late human 39S mitoribosome assembly intermediates, state 3CELECTRON MICROSCOPY3.21092
477OI8|1|ACryo-EM structure of late human 39S mitoribosome assembly intermediates, state 3AELECTRON MICROSCOPY3.51092
487OI7|1|ACryo-EM structure of late human 39S mitoribosome assembly intermediates, state 2ELECTRON MICROSCOPY3.51054
497OI9|1|ACryo-EM structure of late human 39S mitoribosome assembly intermediates, state 3BELECTRON MICROSCOPY3.31092
507QH6|1|ACryo-EM structure of the human mtLSU assembly intermediate upon MRM2 depletion - class 1ELECTRON MICROSCOPY3.081133
517PD3|1|AStructure of the human mitoribosomal large subunit in complex with NSUN4.MTERF4.GTPBP7 and MALSU1.L0R8F8.mt-ACPELECTRON MICROSCOPY3.41280
527O9K|1|AHuman mitochondrial ribosome large subunit assembly intermediate with MTERF4-NSUN4, MRM2, MTG1, the MALSU module, GTPBP5 and mtEF-TuELECTRON MICROSCOPY3.11436
538PK0|1|Ahuman mitoribosomal large subunit assembly intermediate 1 with GTPBP10-GTPBP7ELECTRON MICROSCOPY3.031423

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.


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