NR_3.5_18586.79

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#	IFE	Standardized name	Molecule	Organism	Source	Rfam	Title	Method	Res. Å	#NTs	Date
1	9PN5\|1\|A3 (rep)	5S ribosomal RNA	5S rRNA	Saccharomyces cerevisiae BY4741	Eukarya	RF00001	Composite map of hypomethylated 80S ribosome treated with hygromycin B	Electron microscopy	1.75	121	2026-05-20
2	8CEH\|1\|BB	5S ribosomal RNA	5S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	Translocation intermediate 4 (TI-4) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarin	Electron microscopy	2.05	121	2023-09-20
3	8CDR\|1\|BB	5S ribosomal RNA	5S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	Translocation intermediate 2 (TI-2) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarin	Electron microscopy	2.04	121	2023-09-20
4	8T2Y\|1\|A3	5S ribosomal RNA	5s rRNA	Saccharomyces cerevisiae	Eukarya	RF00001	Hypomethylated yeast 80S bound with cycloheximide, P-site tRNA, and A-site tRNA, messenger RNA, PRE	Electron microscopy	2.2	121	2024-12-11
5	8PFR\|1\|LE	5S ribosomal RNA	5S rRNA	Saccharomyces cerevisiae	Eukarya	RF00001	Mouse RPL39L integrated into the yeast 60S ribosomal subunit	Electron microscopy	2.15	121	2024-06-26
6	7ZW0\|1\|LC	5S ribosomal RNA	5S ribosomal RNA (RDN5-1)	Saccharomyces cerevisiae W303	Eukarya	RF00001	FAP-80S Complex - Rotated state	Electron microscopy	2.4	121	2022-10-05
7	8P8N\|1\|LE	5S ribosomal RNA	5S rRNA	Saccharomyces cerevisiae	Eukarya	RF00001	Mouse RPL39 integrated into the yeast 60S ribosomal subunit	Electron microscopy	2.15	121	2024-06-12
8	8EVT\|1\|A3	5S ribosomal RNA	5s rRNA	Saccharomyces cerevisiae	Eukarya	RF00001	Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES) refined against a composite map	Electron microscopy	2.2	121	2023-09-06
9	8P8U\|1\|LE	5S ribosomal RNA	5S rRNA	Saccharomyces cerevisiae	Eukarya	RF00001	Yeast 60S ribosomal subunit	Electron microscopy	2.23	121	2024-06-12
10	8BN3\|1\|3	5S ribosomal RNA	5S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	Yeast 80S, ES7s delta, eIF5A, Stm1 containing	Electron microscopy	2.4	121	2024-01-10
11	8T2Z\|1\|A3	5S ribosomal RNA	5s rRNA	Saccharomyces cerevisiae	Eukarya	RF00001	Hypomethylated yeast 80S bound with cycloheximide, P-site tRNA, and A-site tRNA, messenger RNA, POST	Electron microscopy	2.4	121	2024-12-11
12	8EVP\|1\|A3	5S ribosomal RNA	5s rRNA	Saccharomyces cerevisiae	Eukarya	RF00001	Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), Structure I	Electron microscopy	2.38	121	2023-09-06
13	8CGN\|1\|BB	5S ribosomal RNA	5S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	Non-rotated 80S S. cerevisiae ribosome with ligands	Electron microscopy	2.28	121	2023-09-20
14	8AGX\|1\|h	5S ribosomal RNA	5S rRNA	Saccharomyces cerevisiae	Eukarya	RF00001	Yeast RQC complex in state with the RING domain of Ltn1 in the IN position	Electron microscopy	2.4	121	2023-03-08
15	8EWC\|1\|A3	5S ribosomal RNA	5s rRNA	Saccharomyces cerevisiae	Eukarya	RF00001	Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), Structure II	Electron microscopy	2.45	121	2023-09-06
16	6T4Q\|1\|C4	5S ribosomal RNA	5S rRNA	Saccharomyces cerevisiae	Eukarya	RF00001	Structure of yeast 80S ribosome stalled on the CGA-CCG inhibitory codon combination.	Electron microscopy	2.6	121	2019-12-25
17	8HFR\|1\|2f	5S ribosomal RNA	5S ribosomal RNA	Saccharomyces cerevisiae S288C	Eukarya	RF00001	NPC-trapped pre-60S particle	Electron microscopy	2.64	121	2023-04-12
18	7MPJ\|1\|A3	5S ribosomal RNA	5S rRNA	Saccharomyces cerevisiae	Eukarya	RF00001	Stm1 bound vacant 80S structure isolated from nop1-D243A	Electron microscopy	2.7	121	2022-05-11
19	8AAF\|1\|h	5S ribosomal RNA	5S rRNA	Saccharomyces cerevisiae	Eukarya	RF00001	Yeast RQC complex in state G	Electron microscopy	2.5	121	2023-03-08
20	8AGZ\|1\|h	5S ribosomal RNA	5S rRNA	Saccharomyces cerevisiae	Eukarya	RF00001	Yeast RQC complex in state with the RING domain of Ltn1 in the OUT position	Electron microscopy	2.6	121	2023-03-08
21	8T2X\|1\|A3	5S ribosomal RNA	5s rRNA	Saccharomyces cerevisiae	Eukarya	RF00001	Hypomethylated yeast 80S bound with cycloheximide, P-site tRNA, A-site tRNA, messenger RNA and eIF5A, PRE	Electron microscopy	2.46	121	2024-12-11
22	8EVS\|1\|A3	5S ribosomal RNA	5s rRNA	Saccharomyces cerevisiae	Eukarya	RF00001	Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2 and GDP, Structure II	Electron microscopy	2.62	121	2023-09-06
23	8AGW\|1\|h	5S ribosomal RNA	5S rRNA	Saccharomyces cerevisiae	Eukarya	RF00001	Yeast RQC complex in state D	Electron microscopy	2.6	121	2023-03-08
24	8AGT\|1\|h	5S ribosomal RNA	5S rRNA	Saccharomyces cerevisiae	Eukarya	RF00001	Yeast RQC complex in state F	Electron microscopy	2.6	121	2023-03-08
25	9F9S\|1\|M3	5S ribosomal RNA	Saccharomyces cerevisiae S288C 5S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	Yeast SDD1 Disome with Mbf1	Electron microscopy	2.9	121	2024-12-04
26	8AGV\|1\|h	5S ribosomal RNA	5S rRNA	Saccharomyces cerevisiae	Eukarya	RF00001	Yeast RQC complex in state H	Electron microscopy	2.6	121	2023-03-08
27	8EVQ\|1\|A3	5S ribosomal RNA	5s rRNA	Saccharomyces cerevisiae	Eukarya	RF00001	Hypopseudouridylated Ribosome bound with TSV IRES, eEF2, GDP, and sordarin, Structure I	Electron microscopy	2.72	121	2023-09-06
28	7TOP\|1\|A5S	5S ribosomal RNA	5S rRNA	Saccharomyces cerevisiae	Eukarya	RF00001	Yeast 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein PR20	Electron microscopy	2.4	121	2022-05-25
29	8AGU\|1\|h	5S ribosomal RNA	5S rRNA	Saccharomyces cerevisiae	Eukarya	RF00001	Yeast RQC complex in state E	Electron microscopy	2.7	121	2023-03-08
30	6TB3\|1\|BR	5S ribosomal RNA	5S rRNA	Saccharomyces cerevisiae	Eukarya	RF00001	yeast 80S ribosome in complex with the Not5 subunit of the CCR4-NOT complex	Electron microscopy	2.8	121	2020-04-22
31	7TOO\|1\|A5S	5S ribosomal RNA	5S rRNA	Saccharomyces cerevisiae	Eukarya	RF00001	Yeast 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein GR20	Electron microscopy	2.7	121	2022-05-25
32	8ZH3\|1\|LB	5S ribosomal RNA	5S rRNA (121-MER)	Saccharomyces cerevisiae S288C	Eukarya	RF00001	80S ribosome with A/P-P/E tRNA and mRNA of WNV	Electron microscopy	2.7	121	2025-05-21
33	8ZHC\|1\|LB	5S ribosomal RNA	5S rRNA (121-MER)	Saccharomyces cerevisiae S288C	Eukarya	RF00001	pre-frameshift complex of yeast 80S ribosome with eRF1 and mRNA of WNV	Electron microscopy	2.3	121	2025-05-21
34	7N8B\|1\|A3	5S ribosomal RNA	5S	Saccharomyces cerevisiae	Eukarya	RF00001	Cycloheximide bound vacant 80S structure isolated from cbf5-D95A	Electron microscopy	3.05	121	2022-05-11
35	9F9S\|1\|L3	5S ribosomal RNA	Saccharomyces cerevisiae S288C 5S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	Yeast SDD1 Disome with Mbf1	Electron microscopy	2.9	121	2024-12-04
36	8EWB\|1\|A3	5S ribosomal RNA	5s rRNA	Saccharomyces cerevisiae	Eukarya	RF00001	Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2 and GDP, Structure III	Electron microscopy	2.87	121	2023-09-06
37	8P8M\|1\|LE	5S ribosomal RNA	5S rRNA	Saccharomyces cerevisiae	Eukarya	RF00001	Yeast 60S ribosomal subunit, RPL39 deletion	Electron microscopy	2.66	121	2024-06-12
38	8P9A\|1\|AS	5S ribosomal RNA	5S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	80S yeast ribosome in complex with Methyllissoclimide	X-ray diffraction	2.9	121	2024-11-27
39	7ZUX\|1\|4	5S ribosomal RNA	5S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	Collided ribosome in a disome unit from S. cerevisiae	Electron microscopy	2.5	121	2023-02-22
40	8CG8\|1\|BB	5S ribosomal RNA	5S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	Translocation intermediate 3 (TI-3) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarin	Electron microscopy	2.57	121	2023-09-20
41	8P9A\|1\|3	5S ribosomal RNA	5S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	80S yeast ribosome in complex with Methyllissoclimide	X-ray diffraction	2.9	121	2024-11-27
42	8CF5\|1\|BB	5S ribosomal RNA	5S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	Translocation intermediate 1 (TI-1) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarin	Electron microscopy	2.71	121	2023-09-20
43	8ZGY\|1\|LB	5S ribosomal RNA	5S rRNA (121-MER)	Saccharomyces cerevisiae S288C	Eukarya	RF00001	80S ribosome with P/E tRNA and mRNA of WNV	Electron microscopy	2.8	121	2025-05-21
44	8T30\|1\|A3	5S ribosomal RNA	5s rRNA	Saccharomyces cerevisiae	Eukarya	RF00001	Hypomethylated yeast 80S bound with cycloheximide, unmodified U2921, mid rotated	Electron microscopy	2.88	121	2024-12-11
45	9DOV\|1\|A3	5S ribosomal RNA	5S rRNA	Saccharomyces cerevisiae	Eukarya	RF00001	Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES) and hygromycin B	Electron microscopy	2.49	121	2026-05-20
46	5TBW\|1\|AS	5S ribosomal RNA	5S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	Crystal structure of chlorolissoclimide bound to the yeast 80S ribosome	X-ray diffraction	3	121	2017-07-26
47	8EVR\|1\|A3	5S ribosomal RNA	5s rRNA	Saccharomyces cerevisiae	Eukarya	RF00001	Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, and sordarin, Structure II	Electron microscopy	2.87	121	2023-09-06
48	7MPI\|1\|A3	5S ribosomal RNA	5s rRNA	Saccharomyces cerevisiae	Eukarya	RF00001	Stm1 bound vacant 80S structure isolated from cbf5-D95A	Electron microscopy	3.05	121	2022-05-11
49	5TBW\|1\|3	5S ribosomal RNA	5S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	Crystal structure of chlorolissoclimide bound to the yeast 80S ribosome	X-ray diffraction	3	121	2017-07-26
50	8T3A\|1\|A3	5S ribosomal RNA	5s rRNA	Saccharomyces cerevisiae	Eukarya	RF00001	Hypomethylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, sordarin, and hibernating factor Los2	Electron microscopy	2.86	121	2024-12-11
51	6SNT\|1\|4	5S ribosomal RNA	5S rRNA	Saccharomyces cerevisiae	Eukarya	RF00001	Yeast 80S ribosome stalled on SDD1 mRNA.	Electron microscopy	2.8	121	2020-03-04
52	8K82\|1\|C4	5S ribosomal RNA	5S rRNA	Saccharomyces cerevisiae	Eukarya	RF00001	Cryo-EM structure of the yeast 80S ribosome with tigecycline, Not5 and P-site tRNA	Electron microscopy	3	121	2024-07-10
53	8PNN\|1\|AS	5S ribosomal RNA	5S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	80S yeast ribosome in complex with Bromolissoclimide	X-ray diffraction	2.9	121	2025-05-28
54	9R9O\|1\|C4	5S ribosomal RNA	5S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	Yeast 80S with nascent chain in complex with Ssb1-ADP in the S1 state	Electron microscopy	2.9	121	2025-12-24
55	9YDB\|1\|B	5S ribosomal RNA	5S RNA	Saccharomyces cerevisiae S288C	Eukarya	RF00001	Eukaryotic pre-60S ribosomes from uL16 P-site loop mutants in bypass condition. Lsg1,Nmd3 and Tif6 present	Electron microscopy	2.83	121	2026-09-30
56	4V88\|1\|A3	5S ribosomal RNA	5S rRNA	Saccharomyces cerevisiae	Eukarya	RF00001	The structure of the eukaryotic ribosome at 3.0 A resolution.	X-ray diffraction	3	121	2014-07-09
57	7ZPQ\|1\|4	5S ribosomal RNA	5S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	Structure of the RQT-bound 80S ribosome from S. cerevisiae (C1)	Electron microscopy	3.47	121	2023-02-22
58	8ZHB\|1\|LB	5S ribosomal RNA	5S rRNA (121-MER)	Saccharomyces cerevisiae S288C	Eukarya	RF00001	80S ribosome with A/A P/E tRNA and mRNA of WNV	Electron microscopy	2.6	121	2025-05-21
59	4V88\|1\|A7	5S ribosomal RNA	5S rRNA	Saccharomyces cerevisiae	Eukarya	RF00001	The structure of the eukaryotic ribosome at 3.0 A resolution.	X-ray diffraction	3	121	2014-07-09
60	6RZZ\|1\|x	5S ribosomal RNA	5S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	Cryo-EM structures of Lsg1-TAP pre-60S ribosomal particles	Electron microscopy	3.2	121	2019-06-26
61	8P85\|1\|AS	5S ribosomal RNA	5S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	80S yeast ribosome in complex with Fluorolissoclimide	X-ray diffraction	2.9	121	2025-06-25
62	6QIK\|1\|x	5S ribosomal RNA	5S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	Cryo-EM structures of Lsg1-TAP pre-60S ribosomal particles	Electron microscopy	3.1	121	2019-06-26
63	8T3D\|1\|A3	5S ribosomal RNA	5s rRNA	Saccharomyces cerevisiae	Eukarya	RF00001	Hypomethylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, and sordarin, Structure III	Electron microscopy	2.95	121	2024-12-11
64	8P4V\|1\|AS	5S ribosomal RNA	5S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	80S yeast ribosome in complex with HaterumaimideQ	X-ray diffraction	3.16	121	2024-10-16
65	8PNN\|1\|3	5S ribosomal RNA	5S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	80S yeast ribosome in complex with Bromolissoclimide	X-ray diffraction	2.9	121	2025-05-28
66	8P4V\|1\|3	5S ribosomal RNA	5S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	80S yeast ribosome in complex with HaterumaimideQ	X-ray diffraction	3.16	121	2024-10-16
67	8ZGR\|1\|LB	5S ribosomal RNA	5S rRNA (121-MER)	Saccharomyces cerevisiae S288C	Eukarya	RF00001	80S ribosome with A/A tRNA and mRNA of WNV	Electron microscopy	2.7	121	2025-05-21
68	6T7T\|1\|C4	5S ribosomal RNA	5S rRNA	Saccharomyces cerevisiae	Eukarya	RF00001	Structure of yeast 80S ribosome stalled on poly(A) tract.	Electron microscopy	3.1	121	2019-12-25
69	6T7I\|1\|C4	5S ribosomal RNA	5S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	Structure of yeast 80S ribosome stalled on the CGA-CGA inhibitory codon combination.	Electron microscopy	3.2	121	2019-12-25
70	6XIR\|1\|3	5S ribosomal RNA	5S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	Cryo-EM Structure of K63 Ubiquitinated Yeast Translocating Ribosome under Oxidative Stress	Electron microscopy	3.2	121	2020-08-26
71	8K2D\|1\|C4	5S ribosomal RNA	5S rRNA	Saccharomyces cerevisiae	Eukarya	RF00001	Cryo-EM structure of the yeast 80S ribosome with tigecycline, eEF2, Stm1 and eIF5A	Electron microscopy	3.2	121	2024-07-10
72	9R9P\|1\|C4	5S ribosomal RNA	5S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	Yeast 80S with nascent chain in complex with Ssb1-ADP in the S2 state	Electron microscopy	3	121	2025-12-24
73	6Q8Y\|1\|BR	5S ribosomal RNA	5S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	Cryo-EM structure of the mRNA translating and degrading yeast 80S ribosome-Xrn1 nuclease complex	Electron microscopy	3.1	121	2019-03-13
74	8P85\|1\|3	5S ribosomal RNA	5S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	80S yeast ribosome in complex with Fluorolissoclimide	X-ray diffraction	2.9	121	2025-06-25
75	8BIP\|1\|C4	5S ribosomal RNA	5S rRNA	Saccharomyces cerevisiae	Eukarya	RF00001	Structure of a yeast 80S ribosome-bound N-Acetyltransferase B complex	Electron microscopy	3.1	121	2023-02-08
76	5I4L\|1\|7	5S ribosomal RNA	5S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	Crystal structure of Amicoumacin A bound to the yeast 80S ribosome	X-ray diffraction	3.1	121	2016-06-22
77	9DP7\|1\|A3	5S ribosomal RNA	5S rRNA	Saccharomyces cerevisiae	Eukarya	RF00001	Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES) and hygromycin B, Class II	Electron microscopy	2.38	121	2026-05-20
78	7OSA\|1\|AB	5S ribosomal RNA	5S	Saccharomyces cerevisiae	Eukarya	RF00001	Pre-translocation complex of 80 S.cerevisiae ribosome with eEF2 and ligands	X-ray diffraction	3	121	2021-12-08
79	7AZY\|1\|F	5S ribosomal RNA	5S ribosomal RNA	Saccharomyces cerevisiae S288C	Eukarya	RF00001	Context-specific inhibition of eukaryotic translation by macrolide antibiotics	Electron microscopy	2.877	121	2021-05-19
80	5MEI\|1\|3	5S ribosomal RNA	5S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	Crystal structure of Agelastatin A bound to the 80S ribosome	X-ray diffraction	3.5	121	2017-06-28
81	9OFV\|1\|h	5S ribosomal RNA	5S rRNA	Saccharomyces cerevisiae	Eukarya	RF00001	Consensus reconstruction of the eukaryotic Ribosome-associated Quality Control complex	Electron microscopy	3.16	121	2025-06-11
82	5MEI\|1\|AS	5S ribosomal RNA	5S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	Crystal structure of Agelastatin A bound to the 80S ribosome	X-ray diffraction	3.5	121	2017-06-28
83	6HHQ\|1\|AS	5S ribosomal RNA	5S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	Crystal structure of compound C45 bound to the yeast 80S ribosome	X-ray diffraction	3.1	121	2019-02-20
84	8Z70\|1\|B	5S ribosomal RNA	5S rRNA	Saccharomyces cerevisiae S288C	Eukarya	RF00001	State 1 (S1) of yeast 80S ribosome bound to 2 tRNAs during mRNA decoding	Electron microscopy	3.2	121	2024-12-11
85	5OBM\|1\|7	5S ribosomal RNA	5S Ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	Crystal structure of Gentamicin bound to the yeast 80S ribosome	X-ray diffraction	3.4	121	2017-12-13
86	6WOO\|1\|7	5S ribosomal RNA	5S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	CryoEM structure of yeast 80S ribosome with Met-tRNAiMet, eIF5B, and GDP	Electron microscopy	2.9	121	2020-09-23
87	7RR5\|1\|C4	5S ribosomal RNA	5S rRNA	Saccharomyces cerevisiae	Eukarya	RF00001	Structure of ribosomal complex bound with Rbg1/Tma46	Electron microscopy	3.23	121	2021-11-10
88	6Z6K\|1\|C4	5S ribosomal RNA	5S rRNA	Saccharomyces cerevisiae	Eukarya	RF00001	Cryo-EM structure of yeast reconstituted Lso2 bound to 80S ribosomes	Electron microscopy	3.4	121	2020-07-29
89	6HHQ\|1\|3	5S ribosomal RNA	5S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	Crystal structure of compound C45 bound to the yeast 80S ribosome	X-ray diffraction	3.1	121	2019-02-20
90	5I4L\|1\|3	5S ribosomal RNA	5S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	Crystal structure of Amicoumacin A bound to the yeast 80S ribosome	X-ray diffraction	3.1	121	2016-06-22
91	8T3E\|1\|A3	5S ribosomal RNA	5s rRNA	Saccharomyces cerevisiae	Eukarya	RF00001	Hypomethylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, and sordarin, Structure IV	Electron microscopy	3.04	121	2024-12-11
92	8T3B\|1\|A3	5S ribosomal RNA	5s rRNA	Saccharomyces cerevisiae	Eukarya	RF00001	Hypomethylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, and sordarin, Structure I	Electron microscopy	3.08	121	2024-12-11
93	8T3F\|1\|A3	5S ribosomal RNA	5s rRNA	Saccharomyces cerevisiae	Eukarya	RF00001	Hypomethylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, and sordarin, Structure V	Electron microscopy	3.09	121	2024-12-11
94	6TNU\|1\|BR	5S ribosomal RNA	5S rRNA	Saccharomyces cerevisiae	Eukarya	RF00001	Yeast 80S ribosome in complex with eIF5A and decoding A-site and P-site tRNAs.	Electron microscopy	3.1	121	2020-04-22
95	7B7D\|1\|LB	5S ribosomal RNA	5S rRNA	Saccharomyces cerevisiae S288C	Eukarya	RF00001	Yeast 80S ribosome bound to eEF3 and A/A- and P/P-tRNAs	Electron microscopy	3.3	121	2021-03-10
96	5LYB\|1\|7	5S ribosomal RNA	5S rRNA	Saccharomyces cerevisiae	Eukarya	RF00001	Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCPmn	X-ray diffraction	3.25	121	2016-11-23
97	9YDC\|1\|B	5S ribosomal RNA	5S RNA	Saccharomyces cerevisiae S288C	Eukarya	RF00001	Eukaryotic 80S ribosome with A/P, P/E tRNAs from uL16 P-site loop mutants in bypass condition	Electron microscopy	3.02	121	2026-09-30
98	8UTI\|1\|B	5S ribosomal RNA	5S rRNA	Saccharomyces cerevisiae	Eukarya	RF00001	Eukaryotic 80S ribosome with Reh1 and A/P site tRNA	Electron microscopy	3.13	121	2024-11-06
99	5ON6\|1\|3	5S ribosomal RNA	5S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	Crystal structure of haemanthamine bound to the 80S ribosome	X-ray diffraction	3.1	121	2018-02-28
100	5LYB\|1\|3	5S ribosomal RNA	5S rRNA	Saccharomyces cerevisiae	Eukarya	RF00001	Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCPmn	X-ray diffraction	3.25	121	2016-11-23
101	5ON6\|1\|AS	5S ribosomal RNA	5S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	Crystal structure of haemanthamine bound to the 80S ribosome	X-ray diffraction	3.1	121	2018-02-28
102	6RI5\|1\|x	5S ribosomal RNA	5S rRNA	Saccharomyces cerevisiae	Eukarya	RF00001	Cryo-EM structures of Lsg1-TAP pre-60S ribosomal particles	Electron microscopy	3.3	121	2019-06-26
103	6S47\|1\|AB	5S ribosomal RNA	5S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	Saccharomyces cerevisiae 80S ribosome bound with ABCF protein New1	Electron microscopy	3.28	121	2019-07-24
104	6QT0\|1\|x	5S ribosomal RNA	5S rRNA	Saccharomyces cerevisiae	Eukarya	RF00001	Cryo-EM structures of Lsg1-TAP pre-60S ribosomal particles	Electron microscopy	3.4	121	2019-06-26
105	6R86\|1\|3	5S ribosomal RNA	5S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	Yeast Vms1-60S ribosomal subunit complex (post-state)	Electron microscopy	3.4	121	2019-07-31
106	6N8O\|1\|B	5S ribosomal RNA	5S rRNA	Saccharomyces cerevisiae	Eukarya	RF00001	Cryo-EM structure of Rpl10-inserted (RI) pre-60S ribosomal subunit	Electron microscopy	3.5	121	2019-03-13
107	8UT0\|1\|B	5S ribosomal RNA	5S rRNA	Saccharomyces cerevisiae	Eukarya	RF00001	Eukaryotic 80S ribosome with Reh1, eIF5A and A/P site tRNA	Electron microscopy	3.22	121	2024-11-06
108	5OBM\|1\|3	5S ribosomal RNA	5S Ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	Crystal structure of Gentamicin bound to the yeast 80S ribosome	X-ray diffraction	3.4	121	2017-12-13
109	6YLG\|1\|3	5S ribosomal RNA	5S rRNA	Saccharomyces cerevisiae	Eukarya	RF00001	Rix1-Rea1 pre-60S particle - 60S core, body 1 (rigid body refinement)	Electron microscopy	3	117	2020-07-29
110	6N8M\|1\|B	5S ribosomal RNA	5S rRNA	Saccharomyces cerevisiae	Eukarya	RF00001	Cryo-EM structure of pre-Lsg1 (PL) pre-60S ribosomal subunit	Electron microscopy	3.5	121	2019-03-13
111	5M1J\|1\|34	5S ribosomal RNA	5S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	Nonstop ribosomal complex bound with Dom34 and Hbs1	Electron microscopy	3.3	121	2017-01-18
112	5NDV\|1\|7	5S ribosomal RNA	5S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	Crystal structure of Paromomycin bound to the yeast 80S ribosome	X-ray diffraction	3.3	121	2017-12-13
113	6R87\|1\|3	5S ribosomal RNA	5S rRNA	Saccharomyces cerevisiae	Eukarya	RF00001	Yeast Vms1 (Q295L)-60S ribosomal subunit complex (pre-state without Arb1)	Electron microscopy	3.4	121	2019-06-26
114	7ZS5\|1\|3	5S ribosomal RNA	5S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	Structure of 60S ribosomal subunit from S. cerevisiae with eIF6 and tRNA	Electron microscopy	3.2	121	2023-02-22
115	5NDV\|1\|3	5S ribosomal RNA	5S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	Crystal structure of Paromomycin bound to the yeast 80S ribosome	X-ray diffraction	3.3	121	2017-12-13
116	7OSM\|1\|AB	5S ribosomal RNA	5S rRNA	Saccharomyces cerevisiae	Eukarya	RF00001	Intermediate translocation complex of 80 S.cerevisiae ribosome with eEF2 and ligands	X-ray diffraction	3	121	2021-12-08
117	5APO\|1\|7	5S ribosomal RNA	5S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	Structure of the yeast 60S ribosomal subunit in complex with Arx1, Alb1 and C-terminally tagged Rei1	Electron microscopy	3.41	121	2015-12-16
118	6Z6J\|1\|C4	5S ribosomal RNA	5S rRNA	Saccharomyces cerevisiae	Eukarya	RF00001	Cryo-EM structure of yeast Lso2 bound to 80S ribosomes under native condition	Electron microscopy	3.4	121	2020-07-29
119	6SV4\|1\|YR	5S ribosomal RNA	5S rRNA	Saccharomyces cerevisiae	Eukarya	RF00001	The cryo-EM structure of SDD1-stalled collided trisome.	Electron microscopy	3.3	121	2020-03-04
120	6N8J\|1\|2	5S ribosomal RNA	5S rRNA	Saccharomyces cerevisiae	Eukarya	RF00001	Cryo-EM structure of late nuclear (LN) pre-60S ribosomal subunit	Electron microscopy	3.5	121	2019-03-13
121	5FCJ\|1\|7	5S ribosomal RNA	5S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	Structure of the anisomycin-containing uL3 W255C mutant 80S yeast ribosome	X-ray diffraction	3.1	121	2016-05-11
122	8XU8\|1\|B	5S ribosomal RNA	5S rRNA	Saccharomyces cerevisiae S288C	Eukarya	RF00001	State 2c(S2c) of yeast 80S ribosome bound to compact eEF2 and 2 tRNAs during peptidyl transferation	Electron microscopy	3.4	121	2024-12-11
123	5FCJ\|1\|3	5S ribosomal RNA	5S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	Structure of the anisomycin-containing uL3 W255C mutant 80S yeast ribosome	X-ray diffraction	3.1	121	2016-05-11
124	5JUP\|1\|D	5S ribosomal RNA	5S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure II (mid-rotated 40S subunit)	Electron microscopy	3.5	121	2016-10-05
125	6SV4\|1\|ZR	5S ribosomal RNA	5S rRNA	Saccharomyces cerevisiae	Eukarya	RF00001	The cryo-EM structure of SDD1-stalled collided trisome.	Electron microscopy	3.3	121	2020-03-04
126	7UG6\|1\|3	5S ribosomal RNA	5S rRNA	Saccharomyces cerevisiae S288C	Eukarya	RF00001	Cryo-EM structure of pre-60S ribosomal subunit, unmethylated G2922	Electron microscopy	2.9	121	2022-12-21
127	6YLH\|1\|3	5S ribosomal RNA	5S rRNA	Saccharomyces cerevisiae	Eukarya	RF00001	Rix1-Rea1 pre-60S particle - full composite structure	Electron microscopy	3.1	117	2020-07-29
128	7UQB\|1\|3	5S ribosomal RNA	5S rRNA	Saccharomyces cerevisiae BY4741	Eukarya	RF00001	Nucleoplasmic pre-60S intermediate of the Nog2 containing pre-rotation state from a SPB1-D52A strain with AlF4	Electron microscopy	2.43	121	2023-03-15
129	7OH3\|1\|3	5S ribosomal RNA	5S rRNA	Saccharomyces cerevisiae S288C	Eukarya	RF00001	Nog1-TAP associated immature ribosomal particle population B from S. cerevisiae	Electron microscopy	3.4	121	2021-11-03
130	6HD7\|1\|3	5S ribosomal RNA	5S rRNA	Saccharomyces cerevisiae	Eukarya	RF00001	Cryo-EM structure of the ribosome-NatA complex	Electron microscopy	3.4	121	2018-12-19
131	8EUB\|1\|A3	5S ribosomal RNA	5S rRNA	Saccharomyces cerevisiae	Eukarya	RF00001	Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2 and GDP, Structure I	Electron microscopy	2.52	121	2023-09-06
132	7BT6\|1\|3	5S ribosomal RNA	RDN5-2 rRNA	Saccharomyces cerevisiae	Eukarya	RF00001	Cryo-EM structure of pre-60S ribosome from Saccharomyces cerevisiae rpl4delta63-87 strain at 3.12 Angstroms resolution(state R1)	Electron microscopy	3.12	121	2020-10-28
133	6SV4\|1\|BR	5S ribosomal RNA	5S rRNA	Saccharomyces cerevisiae	Eukarya	RF00001	The cryo-EM structure of SDD1-stalled collided trisome.	Electron microscopy	3.3	121	2020-03-04
134	7OHQ\|1\|3	5S ribosomal RNA	5S rRNA	Saccharomyces cerevisiae S288C	Eukarya	RF00001	Nog1-TAP associated immature ribosomal particle population C from S. cerevisiae	Electron microscopy	3.1	121	2021-11-03
135	5TGM\|1\|7	5S ribosomal RNA	5S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCA-Pro	X-ray diffraction	3.5	121	2017-01-18
136	7UOO\|1\|3	5S ribosomal RNA	5S rRNA	Saccharomyces cerevisiae BY4741	Eukarya	RF00001	Nucleoplasmic pre-60S intermediate of the Nog2 containing pre-rotation state	Electron microscopy	2.34	121	2023-03-15
137	5TGM\|1\|3	5S ribosomal RNA	5S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCA-Pro	X-ray diffraction	3.5	121	2017-01-18
138	7V08\|1\|3	5S ribosomal RNA	5S rRNA	Saccharomyces cerevisiae BY4741	Eukarya	RF00001	Nucleoplasmic pre-60S intermediate of the Nog2 containing pre-rotation state from a Spb1 D52A suppressor 3 strain	Electron microscopy	2.36	121	2023-03-15
139	7UQZ\|1\|3	5S ribosomal RNA	5S rRNA	Saccharomyces cerevisiae BY4741	Eukarya	RF00001	Nucleoplasmic pre-60S intermediate of the Nog2 containing pre-rotation state from a SPB1 D52A strain	Electron microscopy	2.44	121	2023-03-15
140	7OF1\|1\|3	5S ribosomal RNA	5S rRNA	Saccharomyces cerevisiae S288C	Eukarya	RF00001	Nog1-TAP associated immature ribosomal particle population A from S. cerevisiae	Electron microscopy	3.1	43	2021-11-03
141	6M62\|1\|3	5S ribosomal RNA	RDN5-2 rRNA	Saccharomyces cerevisiae	Eukarya	RF00001	Cryo-Em structure of eukaryotic pre-60S ribosome subunit from Saccharomyces cerevisiae rpf2 delta 255-344 strain, C4 state.	Electron microscopy	3.2	121	2020-08-26
142	5H4P\|1\|3	5S ribosomal RNA	5S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	Structural snapshot of cytoplasmic pre-60S ribosomal particles bound with Nmd3, Lsg1, Tif6 and Reh1	Electron microscopy	3.07	121	2017-01-25
143	7BTB\|1\|3	5S ribosomal RNA	RDN5-2 rRNA	Saccharomyces cerevisiae	Eukarya	RF00001	Cryo-EM structure of pre-60S ribosome from Saccharomyces cerevisiae rpl4delta63-87 strain at 3.22 Angstroms resolution(state R2)	Electron microscopy	3.22	121	2020-10-28
144	3JCT\|1\|3	5S ribosomal RNA	RDN5-2 rRNA	Saccharomyces cerevisiae	Eukarya	RF00001	Cryo-em structure of eukaryotic pre-60S ribosomal subunits	Electron microscopy	3.08	121	2016-06-01
145	9YDE\|1\|B	5S ribosomal RNA	5S RNA	Saccharomyces cerevisiae S288C	Eukarya	RF00001	Eukaryotic 80S ribosome with P/P tRNA from uL16 P-site loop mutants in bypass condition	Electron microscopy	2.82	121	2026-09-30
146	9YDD\|1\|B	5S ribosomal RNA	5S RNA	Saccharomyces cerevisiae S288C	Eukarya	RF00001	Eukaryotic 80S ribosome with A/A, P/P tRNAs from uL16 P-site loop mutants in bypass condition	Electron microscopy	2.66	121	2026-09-30
147	5DAT\|1\|7	5S ribosomal RNA	5S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	Complex of yeast 80S ribosome with hypusine-containing eIF5A	X-ray diffraction	3.15	121	2016-08-31
148	5DGV\|1\|7	5S ribosomal RNA	5S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	Complex of yeast 80S ribosome with hypusine-containing/non-modified eIF5A and/or a peptidyl-tRNA analog	X-ray diffraction	3.1	121	2016-12-14
149	5DGV\|1\|3	5S ribosomal RNA	5S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	Complex of yeast 80S ribosome with hypusine-containing/non-modified eIF5A and/or a peptidyl-tRNA analog	X-ray diffraction	3.1	121	2016-12-14
150	5DAT\|1\|3	5S ribosomal RNA	5S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	Complex of yeast 80S ribosome with hypusine-containing eIF5A	X-ray diffraction	3.15	121	2016-08-31
151	5DGF\|1\|7	5S ribosomal RNA	5S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	Complex of yeast 80S ribosome with hypusine-containing/non-modified eIF5A and/or a peptidyl-tRNA analog	X-ray diffraction	3.3	121	2016-12-14
152	5DC3\|1\|7	5S ribosomal RNA	5S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	Complex of yeast 80S ribosome with non-modified eIF5A	X-ray diffraction	3.25	121	2016-06-01
153	5DGE\|1\|7	5S ribosomal RNA	5S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	Coping with proline stalling: structural basis of hypusine-induced protein synthesis by the eukaryotic ribosome	X-ray diffraction	3.45	121	2017-01-25
154	5DC3\|1\|3	5S ribosomal RNA	5S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	Complex of yeast 80S ribosome with non-modified eIF5A	X-ray diffraction	3.25	121	2016-06-01
155	5TGA\|1\|7	5S ribosomal RNA	5S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCA-Pro	X-ray diffraction	3.3	121	2016-11-23
156	5DGE\|1\|3	5S ribosomal RNA	5S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	Coping with proline stalling: structural basis of hypusine-induced protein synthesis by the eukaryotic ribosome	X-ray diffraction	3.45	121	2017-01-25
157	5DGF\|1\|3	5S ribosomal RNA	5S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	Complex of yeast 80S ribosome with hypusine-containing/non-modified eIF5A and/or a peptidyl-tRNA analog	X-ray diffraction	3.3	121	2016-12-14
158	5FCI\|1\|7	5S ribosomal RNA	5S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	Structure of the vacant uL3 W255C mutant 80S yeast ribosome	X-ray diffraction	3.4	121	2016-05-11
159	5TGA\|1\|3	5S ribosomal RNA	5S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCA-Pro	X-ray diffraction	3.3	121	2016-11-23
160	5FCI\|1\|3	5S ribosomal RNA	5S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	Structure of the vacant uL3 W255C mutant 80S yeast ribosome	X-ray diffraction	3.4	121	2016-05-11
161	8CCS\|1\|BB	5S ribosomal RNA	5S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	80S S. cerevisiae ribosome with ligands in hybrid-1 pre-translocation (PRE-H1) complex	Electron microscopy	1.97	121	2023-09-20
162	8CIV\|1\|BB	5S ribosomal RNA	5S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	Translocation intermediate 5 (TI-5) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarin	Electron microscopy	2.47	121	2023-09-20
163	4U3U\|1\|7	5S ribosomal RNA	5S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	Crystal structure of Cycloheximide bound to the yeast 80S ribosome	X-ray diffraction	2.9	121	2014-10-22
164	4U4R\|1\|3	5S ribosomal RNA	5S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	Crystal structure of Lactimidomycin bound to the yeast 80S ribosome	X-ray diffraction	2.8	121	2014-10-22
165	4U3U\|1\|3	5S ribosomal RNA	5S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	Crystal structure of Cycloheximide bound to the yeast 80S ribosome	X-ray diffraction	2.9	121	2014-10-22
166	4U4R\|1\|7	5S ribosomal RNA	5S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	Crystal structure of Lactimidomycin bound to the yeast 80S ribosome	X-ray diffraction	2.8	121	2014-10-22
167	4U4Q\|1\|7	5S ribosomal RNA	5S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	Crystal structure of Homoharringtonine bound to the yeast 80S ribosome	X-ray diffraction	3	121	2014-10-22
168	4U4Q\|1\|3	5S ribosomal RNA	5S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	Crystal structure of Homoharringtonine bound to the yeast 80S ribosome	X-ray diffraction	3	121	2014-10-22
169	4U3M\|1\|7	5S ribosomal RNA	5.8s rRNA	Saccharomyces cerevisiae	Eukarya	RF00001	Crystal structure of Anisomycin bound to the yeast 80S ribosome	X-ray diffraction	3	121	2014-10-22
170	4U52\|1\|7	5S ribosomal RNA	5S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	Crystal structure of Nagilactone C bound to the yeast 80S ribosome	X-ray diffraction	3	121	2014-10-22
171	4U3M\|1\|3	5S ribosomal RNA	5.8s rRNA	Saccharomyces cerevisiae	Eukarya	RF00001	Crystal structure of Anisomycin bound to the yeast 80S ribosome	X-ray diffraction	3	121	2014-10-22
172	4U6F\|1\|7	5S ribosomal RNA	5S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	Crystal structure of T-2 toxin bound to the yeast 80S ribosome	X-ray diffraction	3.1	121	2014-10-22
173	4U4U\|1\|7	5S ribosomal RNA	5S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	Crystal structure of Lycorine bound to the yeast 80S ribosome	X-ray diffraction	3	121	2014-10-22
174	4U52\|1\|3	5S ribosomal RNA	5S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	Crystal structure of Nagilactone C bound to the yeast 80S ribosome	X-ray diffraction	3	121	2014-10-22
175	4U3N\|1\|3	5S ribosomal RNA	5S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	Crystal structure of CCA trinucleotide bound to the yeast 80S ribosome	X-ray diffraction	3.2	121	2014-10-22
176	4U4U\|1\|3	5S ribosomal RNA	5S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	Crystal structure of Lycorine bound to the yeast 80S ribosome	X-ray diffraction	3	121	2014-10-22
177	4U4N\|1\|7	5S ribosomal RNA	5S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	Crystal structure of Edeine bound to the yeast 80S ribosome	X-ray diffraction	3.1	121	2014-10-22
178	4U6F\|1\|3	5S ribosomal RNA	5S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	Crystal structure of T-2 toxin bound to the yeast 80S ribosome	X-ray diffraction	3.1	121	2014-10-22
179	4U4Z\|1\|7	5S ribosomal RNA	5S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	Crystal structure of Phyllanthoside bound to the yeast 80S ribosome	X-ray diffraction	3.1	121	2014-10-22
180	4U4N\|1\|3	5S ribosomal RNA	5S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	Crystal structure of Edeine bound to the yeast 80S ribosome	X-ray diffraction	3.1	121	2014-10-22
181	4U55\|1\|7	5S ribosomal RNA	5S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	Crystal structure of Cryptopleurine bound to the yeast 80S ribosome	X-ray diffraction	3.2	121	2014-10-22
182	4U50\|1\|3	5S ribosomal RNA	5S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	Crystal structure of Verrucarin bound to the yeast 80S ribosome	X-ray diffraction	3.2	121	2014-10-22
183	4U4Z\|1\|3	5S ribosomal RNA	5S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	Crystal structure of Phyllanthoside bound to the yeast 80S ribosome	X-ray diffraction	3.1	121	2014-10-22
184	4U3N\|1\|7	5S ribosomal RNA	5S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	Crystal structure of CCA trinucleotide bound to the yeast 80S ribosome	X-ray diffraction	3.2	121	2014-10-22
185	4U50\|1\|7	5S ribosomal RNA	5S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	Crystal structure of Verrucarin bound to the yeast 80S ribosome	X-ray diffraction	3.2	121	2014-10-22
186	4U4Y\|1\|7	5S ribosomal RNA	5S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	Crystal structure of Pactamycin bound to the yeast 80S ribosome	X-ray diffraction	3.2	121	2014-10-22
187	4U4Y\|1\|3	5S ribosomal RNA	5S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	Crystal structure of Pactamycin bound to the yeast 80S ribosome	X-ray diffraction	3.2	121	2014-10-22
188	4U51\|1\|7	5S ribosomal RNA	5S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	Crystal structure of Narciclasine bound to the yeast 80S ribosome	X-ray diffraction	3.2	121	2014-10-22
189	4U55\|1\|3	5S ribosomal RNA	5S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	Crystal structure of Cryptopleurine bound to the yeast 80S ribosome	X-ray diffraction	3.2	121	2014-10-22
190	4U53\|1\|3	5S ribosomal RNA	5S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	Crystal structure of Deoxynivalenol bound to the yeast 80S ribosome	X-ray diffraction	3.3	121	2014-10-22
191	4U53\|1\|7	5S ribosomal RNA	5S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	Crystal structure of Deoxynivalenol bound to the yeast 80S ribosome	X-ray diffraction	3.3	121	2014-10-22
192	4U51\|1\|3	5S ribosomal RNA	5S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	Crystal structure of Narciclasine bound to the yeast 80S ribosome	X-ray diffraction	3.2	121	2014-10-22
193	4U56\|1\|7	5S ribosomal RNA	5S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	Crystal structure of Blasticidin S bound to the yeast 80S ribosome	X-ray diffraction	3.45	121	2014-10-22
194	4U56\|1\|3	5S ribosomal RNA	5S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	Crystal structure of Blasticidin S bound to the yeast 80S ribosome	X-ray diffraction	3.45	121	2014-10-22
195	8CDL\|1\|BB	5S ribosomal RNA	5S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	80S S. cerevisiae ribosome with ligands in hybrid-2 pre-translocation (PRE-H2) complex	Electron microscopy	2.72	121	2023-09-20
196	9F58\|1\|b	5S ribosomal RNA	5S rRNA	Saccharomyces cerevisiae	Eukarya	RF00001	Gcn2 dimer bound to the 60S ribosomal subunit	Electron microscopy	3.1	121	2025-03-26
197	8CKU\|1\|BB	5S ribosomal RNA	5S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	Translocation intermediate 1 (TI-1*) of 80S S. cerevisiae ribosome with ligands and eEF2 in the absence of sordarin	Electron microscopy	3.11	121	2023-09-20
198	5T62\|1\|B	5S ribosomal RNA	5S Ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	Nmd3 is a structural mimic of eIF5A, and activates the cpGTPase Lsg1 during 60S ribosome biogenesis: 60S-Nmd3-Tif6-Lsg1 Complex	Electron microscopy	3.1	121	2017-02-08
199	6QTZ\|1\|x	5S ribosomal RNA	5S rRNA	Saccharomyces cerevisiae	Eukarya	RF00001	Cryo-EM structures of Lsg1-TAP pre-60S ribosomal particles	Electron microscopy	3.5	121	2019-06-26

Release history

Release	4.59
Date	2026-09-30

Parents

This class	Parent classes	Release id	Intersection	Added to this class	Only in parent

Children

This class	Descendant classes	Release id	Intersection	Only in this class	Added to child

Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.

#S	PDB	Title	Method	Resolution	#NTs
1	7OF1\|1\|3	Nog1-TAP associated immature ribosomal particle population A from S. cerevisiae	ELECTRON MICROSCOPY	3.1	43
2	8ZHC\|1\|LB	pre-frameshift complex of yeast 80S ribosome with eRF1 and mRNA of WNV	ELECTRON MICROSCOPY	2.3	121
3	8ZGR\|1\|LB	80S ribosome with A/A tRNA and mRNA of WNV	ELECTRON MICROSCOPY	2.7	121
4	8ZHB\|1\|LB	80S ribosome with A/A P/E tRNA and mRNA of WNV	ELECTRON MICROSCOPY	2.6	121
5	6HD7\|1\|3	Cryo-EM structure of the ribosome-NatA complex	ELECTRON MICROSCOPY	3.4	121
6	7ZS5\|1\|3	Structure of 60S ribosomal subunit from S. cerevisiae with eIF6 and tRNA	ELECTRON MICROSCOPY	3.2	121
7	8XU8\|1\|B	State 2c(S2c) of yeast 80S ribosome bound to compact eEF2 and 2 tRNAs during peptidyl transferation	ELECTRON MICROSCOPY	3.4	121
8	9PN5\|1\|A3	Composite map of hypomethylated 80S ribosome treated with hygromycin B	ELECTRON MICROSCOPY	1.75	121
9	8T2Z\|1\|A3	Hypomethylated yeast 80S bound with cycloheximide, P-site tRNA, and A-site tRNA, messenger RNA, POST	ELECTRON MICROSCOPY	2.4	121
10	7B7D\|1\|LB	Yeast 80S ribosome bound to eEF3 and A/A- and P/P-tRNAs	ELECTRON MICROSCOPY	3.3	121
11	6TNU\|1\|BR	Yeast 80S ribosome in complex with eIF5A and decoding A-site and P-site tRNAs.	ELECTRON MICROSCOPY	3.1	121
12	8UT0\|1\|B	Eukaryotic 80S ribosome with Reh1, eIF5A and A/P site tRNA	ELECTRON MICROSCOPY	3.22	121
13	8UTI\|1\|B	Eukaryotic 80S ribosome with Reh1 and A/P site tRNA	ELECTRON MICROSCOPY	3.13	121
14	6SV4\|1\|BR	The cryo-EM structure of SDD1-stalled collided trisome.	ELECTRON MICROSCOPY	3.3	121
15	6SV4\|1\|ZR	The cryo-EM structure of SDD1-stalled collided trisome.	ELECTRON MICROSCOPY	3.3	121
16	6SV4\|1\|YR	The cryo-EM structure of SDD1-stalled collided trisome.	ELECTRON MICROSCOPY	3.3	121
17	6R87\|1\|3	Yeast Vms1 (Q295L)-60S ribosomal subunit complex (pre-state without Arb1)	ELECTRON MICROSCOPY	3.4	121
18	6R86\|1\|3	Yeast Vms1-60S ribosomal subunit complex (post-state)	ELECTRON MICROSCOPY	3.4	121
19	8T2X\|1\|A3	Hypomethylated yeast 80S bound with cycloheximide, P-site tRNA, A-site tRNA, messenger RNA and eIF5A, PRE	ELECTRON MICROSCOPY	2.46	121
20	8T2Y\|1\|A3	Hypomethylated yeast 80S bound with cycloheximide, P-site tRNA, and A-site tRNA, messenger RNA, PRE	ELECTRON MICROSCOPY	2.2	121
21	8T30\|1\|A3	Hypomethylated yeast 80S bound with cycloheximide, unmodified U2921, mid rotated	ELECTRON MICROSCOPY	2.88	121
22	7OSM\|1\|AB	Intermediate translocation complex of 80 S.cerevisiae ribosome with eEF2 and ligands	X-RAY DIFFRACTION	3	121
23	7OSA\|1\|AB	Pre-translocation complex of 80 S.cerevisiae ribosome with eEF2 and ligands	X-RAY DIFFRACTION	3	121
24	9DP7\|1\|A3	Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES) and hygromycin B, Class II	ELECTRON MICROSCOPY	2.38	121
25	9DOV\|1\|A3	Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES) and hygromycin B	ELECTRON MICROSCOPY	2.49	121
26	8EVR\|1\|A3	Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, and sordarin, Structure II	ELECTRON MICROSCOPY	2.87	121
27	8EVQ\|1\|A3	Hypopseudouridylated Ribosome bound with TSV IRES, eEF2, GDP, and sordarin, Structure I	ELECTRON MICROSCOPY	2.72	121
28	8EUB\|1\|A3	Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2 and GDP, Structure I	ELECTRON MICROSCOPY	2.52	121
29	8EVS\|1\|A3	Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2 and GDP, Structure II	ELECTRON MICROSCOPY	2.62	121
30	8EWB\|1\|A3	Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2 and GDP, Structure III	ELECTRON MICROSCOPY	2.87	121
31	8EVP\|1\|A3	Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), Structure I	ELECTRON MICROSCOPY	2.38	121
32	8EWC\|1\|A3	Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), Structure II	ELECTRON MICROSCOPY	2.45	121
33	8EVT\|1\|A3	Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES) refined against a composite map	ELECTRON MICROSCOPY	2.2	121
34	7MPI\|1\|A3	Stm1 bound vacant 80S structure isolated from cbf5-D95A	ELECTRON MICROSCOPY	3.05	121
35	7N8B\|1\|A3	Cycloheximide bound vacant 80S structure isolated from cbf5-D95A	ELECTRON MICROSCOPY	3.05	121
36	7MPJ\|1\|A3	Stm1 bound vacant 80S structure isolated from nop1-D243A	ELECTRON MICROSCOPY	2.7	121
37	5FCI\|1\|7	Structure of the vacant uL3 W255C mutant 80S yeast ribosome	X-RAY DIFFRACTION	3.4	121
38	5FCJ\|1\|7	Structure of the anisomycin-containing uL3 W255C mutant 80S yeast ribosome	X-RAY DIFFRACTION	3.1	121
39	5TGA\|1\|7	Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCA-Pro	X-RAY DIFFRACTION	3.3	121
40	5LYB\|1\|7	Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCPmn	X-RAY DIFFRACTION	3.25	121
41	5I4L\|1\|7	Crystal structure of Amicoumacin A bound to the yeast 80S ribosome	X-RAY DIFFRACTION	3.1	121
42	4V88\|1\|A7	The structure of the eukaryotic ribosome at 3.0 A resolution.	X-RAY DIFFRACTION	3	121
43	4U3U\|1\|7	Crystal structure of Cycloheximide bound to the yeast 80S ribosome	X-RAY DIFFRACTION	2.9	121
44	4U4R\|1\|7	Crystal structure of Lactimidomycin bound to the yeast 80S ribosome	X-RAY DIFFRACTION	2.8	121
45	4U3M\|1\|7	Crystal structure of Anisomycin bound to the yeast 80S ribosome	X-RAY DIFFRACTION	3	121
46	4U4Y\|1\|7	Crystal structure of Pactamycin bound to the yeast 80S ribosome	X-RAY DIFFRACTION	3.2	121
47	4U4N\|1\|7	Crystal structure of Edeine bound to the yeast 80S ribosome	X-RAY DIFFRACTION	3.1	121
48	4U4Q\|1\|7	Crystal structure of Homoharringtonine bound to the yeast 80S ribosome	X-RAY DIFFRACTION	3	121
49	4U4U\|1\|7	Crystal structure of Lycorine bound to the yeast 80S ribosome	X-RAY DIFFRACTION	3	121
50	4U51\|1\|7	Crystal structure of Narciclasine bound to the yeast 80S ribosome	X-RAY DIFFRACTION	3.2	121
51	4U53\|1\|7	Crystal structure of Deoxynivalenol bound to the yeast 80S ribosome	X-RAY DIFFRACTION	3.3	121
52	4U4Z\|1\|7	Crystal structure of Phyllanthoside bound to the yeast 80S ribosome	X-RAY DIFFRACTION	3.1	121
53	4U3N\|1\|7	Crystal structure of CCA trinucleotide bound to the yeast 80S ribosome	X-RAY DIFFRACTION	3.2	121
54	4U55\|1\|7	Crystal structure of Cryptopleurine bound to the yeast 80S ribosome	X-RAY DIFFRACTION	3.2	121
55	4U56\|1\|7	Crystal structure of Blasticidin S bound to the yeast 80S ribosome	X-RAY DIFFRACTION	3.45	121
56	4U50\|1\|7	Crystal structure of Verrucarin bound to the yeast 80S ribosome	X-RAY DIFFRACTION	3.2	121
57	5TGM\|1\|7	Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCA-Pro	X-RAY DIFFRACTION	3.5	121
58	4U52\|1\|7	Crystal structure of Nagilactone C bound to the yeast 80S ribosome	X-RAY DIFFRACTION	3	121
59	5DAT\|1\|7	Complex of yeast 80S ribosome with hypusine-containing eIF5A	X-RAY DIFFRACTION	3.15	121
60	5DGF\|1\|7	Complex of yeast 80S ribosome with hypusine-containing/non-modified eIF5A and/or a peptidyl-tRNA analog	X-RAY DIFFRACTION	3.3	121
61	4U6F\|1\|7	Crystal structure of T-2 toxin bound to the yeast 80S ribosome	X-RAY DIFFRACTION	3.1	121
62	5DGV\|1\|7	Complex of yeast 80S ribosome with hypusine-containing/non-modified eIF5A and/or a peptidyl-tRNA analog	X-RAY DIFFRACTION	3.1	121
63	5DGE\|1\|7	Coping with proline stalling: structural basis of hypusine-induced protein synthesis by the eukaryotic ribosome	X-RAY DIFFRACTION	3.45	121
64	5DC3\|1\|7	Complex of yeast 80S ribosome with non-modified eIF5A	X-RAY DIFFRACTION	3.25	121
65	5MEI\|1\|AS	Crystal structure of Agelastatin A bound to the 80S ribosome	X-RAY DIFFRACTION	3.5	121
66	5ON6\|1\|AS	Crystal structure of haemanthamine bound to the 80S ribosome	X-RAY DIFFRACTION	3.1	121
67	5TBW\|1\|AS	Crystal structure of chlorolissoclimide bound to the yeast 80S ribosome	X-RAY DIFFRACTION	3	121
68	6HHQ\|1\|AS	Crystal structure of compound C45 bound to the yeast 80S ribosome	X-RAY DIFFRACTION	3.1	121
69	8P9A\|1\|AS	80S yeast ribosome in complex with Methyllissoclimide	X-RAY DIFFRACTION	2.9	121
70	8P85\|1\|AS	80S yeast ribosome in complex with Fluorolissoclimide	X-RAY DIFFRACTION	2.9	121
71	8PNN\|1\|AS	80S yeast ribosome in complex with Bromolissoclimide	X-RAY DIFFRACTION	2.9	121
72	8P4V\|1\|AS	80S yeast ribosome in complex with HaterumaimideQ	X-RAY DIFFRACTION	3.16	121
73	5NDV\|1\|7	Crystal structure of Paromomycin bound to the yeast 80S ribosome	X-RAY DIFFRACTION	3.3	121
74	9YDD\|1\|B	Eukaryotic 80S ribosome with A/A, P/P tRNAs from uL16 P-site loop mutants in bypass condition	ELECTRON MICROSCOPY	2.66	121
75	9YDE\|1\|B	Eukaryotic 80S ribosome with P/P tRNA from uL16 P-site loop mutants in bypass condition	ELECTRON MICROSCOPY	2.82	121
76	9YDC\|1\|B	Eukaryotic 80S ribosome with A/P, P/E tRNAs from uL16 P-site loop mutants in bypass condition	ELECTRON MICROSCOPY	3.02	121
77	9YDB\|1\|B	Eukaryotic pre-60S ribosomes from uL16 P-site loop mutants in bypass condition. Lsg1,Nmd3 and Tif6 present	ELECTRON MICROSCOPY	2.83	121
78	6Q8Y\|1\|BR	Cryo-EM structure of the mRNA translating and degrading yeast 80S ribosome-Xrn1 nuclease complex	ELECTRON MICROSCOPY	3.1	121
79	7AZY\|1\|F	Context-specific inhibition of eukaryotic translation by macrolide antibiotics	ELECTRON MICROSCOPY	2.877	121
80	6Z6J\|1\|C4	Cryo-EM structure of yeast Lso2 bound to 80S ribosomes under native condition	ELECTRON MICROSCOPY	3.4	121
81	8K2D\|1\|C4	Cryo-EM structure of the yeast 80S ribosome with tigecycline, eEF2, Stm1 and eIF5A	ELECTRON MICROSCOPY	3.2	121
82	6Z6K\|1\|C4	Cryo-EM structure of yeast reconstituted Lso2 bound to 80S ribosomes	ELECTRON MICROSCOPY	3.4	121
83	5APO\|1\|7	Structure of the yeast 60S ribosomal subunit in complex with Arx1, Alb1 and C-terminally tagged Rei1	ELECTRON MICROSCOPY	3.41	121
84	6WOO\|1\|7	CryoEM structure of yeast 80S ribosome with Met-tRNAiMet, eIF5B, and GDP	ELECTRON MICROSCOPY	2.9	121
85	8ZGY\|1\|LB	80S ribosome with P/E tRNA and mRNA of WNV	ELECTRON MICROSCOPY	2.8	121
86	8ZH3\|1\|LB	80S ribosome with A/P-P/E tRNA and mRNA of WNV	ELECTRON MICROSCOPY	2.7	121
87	6S47\|1\|AB	Saccharomyces cerevisiae 80S ribosome bound with ABCF protein New1	ELECTRON MICROSCOPY	3.28	121
88	8K82\|1\|C4	Cryo-EM structure of the yeast 80S ribosome with tigecycline, Not5 and P-site tRNA	ELECTRON MICROSCOPY	3	121
89	6TB3\|1\|BR	yeast 80S ribosome in complex with the Not5 subunit of the CCR4-NOT complex	ELECTRON MICROSCOPY	2.8	121
90	6T4Q\|1\|C4	Structure of yeast 80S ribosome stalled on the CGA-CCG inhibitory codon combination.	ELECTRON MICROSCOPY	2.6	121
91	6SNT\|1\|4	Yeast 80S ribosome stalled on SDD1 mRNA.	ELECTRON MICROSCOPY	2.8	121
92	6T7T\|1\|C4	Structure of yeast 80S ribosome stalled on poly(A) tract.	ELECTRON MICROSCOPY	3.1	121
93	6T7I\|1\|C4	Structure of yeast 80S ribosome stalled on the CGA-CGA inhibitory codon combination.	ELECTRON MICROSCOPY	3.2	121
94	8Z70\|1\|B	State 1 (S1) of yeast 80S ribosome bound to 2 tRNAs during mRNA decoding	ELECTRON MICROSCOPY	3.2	121
95	8BIP\|1\|C4	Structure of a yeast 80S ribosome-bound N-Acetyltransferase B complex	ELECTRON MICROSCOPY	3.1	121
96	7ZW0\|1\|LC	FAP-80S Complex - Rotated state	ELECTRON MICROSCOPY	2.4	121
97	9OFV\|1\|h	Consensus reconstruction of the eukaryotic Ribosome-associated Quality Control complex	ELECTRON MICROSCOPY	3.16	121
98	8AGW\|1\|h	Yeast RQC complex in state D	ELECTRON MICROSCOPY	2.6	121
99	8AGX\|1\|h	Yeast RQC complex in state with the RING domain of Ltn1 in the IN position	ELECTRON MICROSCOPY	2.4	121
100	8AAF\|1\|h	Yeast RQC complex in state G	ELECTRON MICROSCOPY	2.5	121
101	8AGZ\|1\|h	Yeast RQC complex in state with the RING domain of Ltn1 in the OUT position	ELECTRON MICROSCOPY	2.6	121
102	8AGT\|1\|h	Yeast RQC complex in state F	ELECTRON MICROSCOPY	2.6	121
103	8AGV\|1\|h	Yeast RQC complex in state H	ELECTRON MICROSCOPY	2.6	121
104	8AGU\|1\|h	Yeast RQC complex in state E	ELECTRON MICROSCOPY	2.7	121
105	9F9S\|1\|L3	Yeast SDD1 Disome with Mbf1	ELECTRON MICROSCOPY	2.9	121
106	7ZPQ\|1\|4	Structure of the RQT-bound 80S ribosome from S. cerevisiae (C1)	ELECTRON MICROSCOPY	3.47	121
107	9F58\|1\|b	Gcn2 dimer bound to the 60S ribosomal subunit	ELECTRON MICROSCOPY	3.1	121
108	8BN3\|1\|3	Yeast 80S, ES7s delta, eIF5A, Stm1 containing	ELECTRON MICROSCOPY	2.4	121
109	5NDV\|1\|3	Crystal structure of Paromomycin bound to the yeast 80S ribosome	X-RAY DIFFRACTION	3.3	121
110	4U56\|1\|3	Crystal structure of Blasticidin S bound to the yeast 80S ribosome	X-RAY DIFFRACTION	3.45	121
111	5TGM\|1\|3	Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCA-Pro	X-RAY DIFFRACTION	3.5	121
112	5DGF\|1\|3	Complex of yeast 80S ribosome with hypusine-containing/non-modified eIF5A and/or a peptidyl-tRNA analog	X-RAY DIFFRACTION	3.3	121
113	5DGE\|1\|3	Coping with proline stalling: structural basis of hypusine-induced protein synthesis by the eukaryotic ribosome	X-RAY DIFFRACTION	3.45	121
114	5DC3\|1\|3	Complex of yeast 80S ribosome with non-modified eIF5A	X-RAY DIFFRACTION	3.25	121
115	5DGV\|1\|3	Complex of yeast 80S ribosome with hypusine-containing/non-modified eIF5A and/or a peptidyl-tRNA analog	X-RAY DIFFRACTION	3.1	121
116	5LYB\|1\|3	Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCPmn	X-RAY DIFFRACTION	3.25	121
117	5TGA\|1\|3	Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCA-Pro	X-RAY DIFFRACTION	3.3	121
118	5DAT\|1\|3	Complex of yeast 80S ribosome with hypusine-containing eIF5A	X-RAY DIFFRACTION	3.15	121
119	4U50\|1\|3	Crystal structure of Verrucarin bound to the yeast 80S ribosome	X-RAY DIFFRACTION	3.2	121
120	4U53\|1\|3	Crystal structure of Deoxynivalenol bound to the yeast 80S ribosome	X-RAY DIFFRACTION	3.3	121
121	4U6F\|1\|3	Crystal structure of T-2 toxin bound to the yeast 80S ribosome	X-RAY DIFFRACTION	3.1	121
122	4U3N\|1\|3	Crystal structure of CCA trinucleotide bound to the yeast 80S ribosome	X-RAY DIFFRACTION	3.2	121
123	4U51\|1\|3	Crystal structure of Narciclasine bound to the yeast 80S ribosome	X-RAY DIFFRACTION	3.2	121
124	4U55\|1\|3	Crystal structure of Cryptopleurine bound to the yeast 80S ribosome	X-RAY DIFFRACTION	3.2	121
125	4U4Z\|1\|3	Crystal structure of Phyllanthoside bound to the yeast 80S ribosome	X-RAY DIFFRACTION	3.1	121
126	4U4N\|1\|3	Crystal structure of Edeine bound to the yeast 80S ribosome	X-RAY DIFFRACTION	3.1	121
127	4U4Q\|1\|3	Crystal structure of Homoharringtonine bound to the yeast 80S ribosome	X-RAY DIFFRACTION	3	121
128	4U4U\|1\|3	Crystal structure of Lycorine bound to the yeast 80S ribosome	X-RAY DIFFRACTION	3	121
129	4U3M\|1\|3	Crystal structure of Anisomycin bound to the yeast 80S ribosome	X-RAY DIFFRACTION	3	121
130	4U4R\|1\|3	Crystal structure of Lactimidomycin bound to the yeast 80S ribosome	X-RAY DIFFRACTION	2.8	121
131	4V88\|1\|A3	The structure of the eukaryotic ribosome at 3.0 A resolution.	X-RAY DIFFRACTION	3	121
132	4U3U\|1\|3	Crystal structure of Cycloheximide bound to the yeast 80S ribosome	X-RAY DIFFRACTION	2.9	121
133	4U4Y\|1\|3	Crystal structure of Pactamycin bound to the yeast 80S ribosome	X-RAY DIFFRACTION	3.2	121
134	5TBW\|1\|3	Crystal structure of chlorolissoclimide bound to the yeast 80S ribosome	X-RAY DIFFRACTION	3	121
135	5ON6\|1\|3	Crystal structure of haemanthamine bound to the 80S ribosome	X-RAY DIFFRACTION	3.1	121
136	4U52\|1\|3	Crystal structure of Nagilactone C bound to the yeast 80S ribosome	X-RAY DIFFRACTION	3	121
137	6HHQ\|1\|3	Crystal structure of compound C45 bound to the yeast 80S ribosome	X-RAY DIFFRACTION	3.1	121
138	5FCJ\|1\|3	Structure of the anisomycin-containing uL3 W255C mutant 80S yeast ribosome	X-RAY DIFFRACTION	3.1	121
139	5I4L\|1\|3	Crystal structure of Amicoumacin A bound to the yeast 80S ribosome	X-RAY DIFFRACTION	3.1	121
140	5MEI\|1\|3	Crystal structure of Agelastatin A bound to the 80S ribosome	X-RAY DIFFRACTION	3.5	121
141	8P4V\|1\|3	80S yeast ribosome in complex with HaterumaimideQ	X-RAY DIFFRACTION	3.16	121
142	8PNN\|1\|3	80S yeast ribosome in complex with Bromolissoclimide	X-RAY DIFFRACTION	2.9	121
143	8P9A\|1\|3	80S yeast ribosome in complex with Methyllissoclimide	X-RAY DIFFRACTION	2.9	121
144	8P85\|1\|3	80S yeast ribosome in complex with Fluorolissoclimide	X-RAY DIFFRACTION	2.9	121
145	5FCI\|1\|3	Structure of the vacant uL3 W255C mutant 80S yeast ribosome	X-RAY DIFFRACTION	3.4	121
146	7ZUX\|1\|4	Collided ribosome in a disome unit from S. cerevisiae	ELECTRON MICROSCOPY	2.5	121
147	7TOP\|1\|A5S	Yeast 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein PR20	ELECTRON MICROSCOPY	2.4	121
148	7TOO\|1\|A5S	Yeast 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein GR20	ELECTRON MICROSCOPY	2.7	121
149	8P8U\|1\|LE	Yeast 60S ribosomal subunit	ELECTRON MICROSCOPY	2.23	121
150	8P8N\|1\|LE	Mouse RPL39 integrated into the yeast 60S ribosomal subunit	ELECTRON MICROSCOPY	2.15	121
151	8PFR\|1\|LE	Mouse RPL39L integrated into the yeast 60S ribosomal subunit	ELECTRON MICROSCOPY	2.15	121
152	8P8M\|1\|LE	Yeast 60S ribosomal subunit, RPL39 deletion	ELECTRON MICROSCOPY	2.66	121
153	9R9O\|1\|C4	Yeast 80S with nascent chain in complex with Ssb1-ADP in the S1 state	ELECTRON MICROSCOPY	2.9	121
154	9R9P\|1\|C4	Yeast 80S with nascent chain in complex with Ssb1-ADP in the S2 state	ELECTRON MICROSCOPY	3	121
155	7RR5\|1\|C4	Structure of ribosomal complex bound with Rbg1/Tma46	ELECTRON MICROSCOPY	3.23	121
156	3JCT\|1\|3	Cryo-em structure of eukaryotic pre-60S ribosomal subunits	ELECTRON MICROSCOPY	3.08	121
157	6RI5\|1\|x	Cryo-EM structures of Lsg1-TAP pre-60S ribosomal particles	ELECTRON MICROSCOPY	3.3	121
158	6QTZ\|1\|x	Cryo-EM structures of Lsg1-TAP pre-60S ribosomal particles	ELECTRON MICROSCOPY	3.5	121
159	6QT0\|1\|x	Cryo-EM structures of Lsg1-TAP pre-60S ribosomal particles	ELECTRON MICROSCOPY	3.4	121
160	5OBM\|1\|3	Crystal structure of Gentamicin bound to the yeast 80S ribosome	X-RAY DIFFRACTION	3.4	121
161	5OBM\|1\|7	Crystal structure of Gentamicin bound to the yeast 80S ribosome	X-RAY DIFFRACTION	3.4	121
162	5JUP\|1\|D	Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure II (mid-rotated 40S subunit)	ELECTRON MICROSCOPY	3.5	121
163	8T3B\|1\|A3	Hypomethylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, and sordarin, Structure I	ELECTRON MICROSCOPY	3.08	121
164	8T3E\|1\|A3	Hypomethylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, and sordarin, Structure IV	ELECTRON MICROSCOPY	3.04	121
165	8T3D\|1\|A3	Hypomethylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, and sordarin, Structure III	ELECTRON MICROSCOPY	2.95	121
166	8T3A\|1\|A3	Hypomethylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, sordarin, and hibernating factor Los2	ELECTRON MICROSCOPY	2.86	121
167	8T3F\|1\|A3	Hypomethylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, and sordarin, Structure V	ELECTRON MICROSCOPY	3.09	121
168	8CG8\|1\|BB	Translocation intermediate 3 (TI-3) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarin	ELECTRON MICROSCOPY	2.57	121
169	8CIV\|1\|BB	Translocation intermediate 5 (TI-5) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarin	ELECTRON MICROSCOPY	2.47	121
170	8CDR\|1\|BB	Translocation intermediate 2 (TI-2) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarin	ELECTRON MICROSCOPY	2.04	121
171	8CGN\|1\|BB	Non-rotated 80S S. cerevisiae ribosome with ligands	ELECTRON MICROSCOPY	2.28	121
172	8CEH\|1\|BB	Translocation intermediate 4 (TI-4) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarin	ELECTRON MICROSCOPY	2.05	121
173	8CCS\|1\|BB	80S S. cerevisiae ribosome with ligands in hybrid-1 pre-translocation (PRE-H1) complex	ELECTRON MICROSCOPY	1.97	121
174	8CF5\|1\|BB	Translocation intermediate 1 (TI-1) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarin	ELECTRON MICROSCOPY	2.71	121
175	8CDL\|1\|BB	80S S. cerevisiae ribosome with ligands in hybrid-2 pre-translocation (PRE-H2) complex	ELECTRON MICROSCOPY	2.72	121
176	8CKU\|1\|BB	Translocation intermediate 1 (TI-1*) of 80S S. cerevisiae ribosome with ligands and eEF2 in the absence of sordarin	ELECTRON MICROSCOPY	3.11	121
177	5M1J\|1\|34	Nonstop ribosomal complex bound with Dom34 and Hbs1	ELECTRON MICROSCOPY	3.3	121
178	9F9S\|1\|M3	Yeast SDD1 Disome with Mbf1	ELECTRON MICROSCOPY	2.9	121
179	6XIR\|1\|3	Cryo-EM Structure of K63 Ubiquitinated Yeast Translocating Ribosome under Oxidative Stress	ELECTRON MICROSCOPY	3.2	121
180	5H4P\|1\|3	Structural snapshot of cytoplasmic pre-60S ribosomal particles bound with Nmd3, Lsg1, Tif6 and Reh1	ELECTRON MICROSCOPY	3.07	121
181	6N8J\|1\|2	Cryo-EM structure of late nuclear (LN) pre-60S ribosomal subunit	ELECTRON MICROSCOPY	3.5	121
182	6QIK\|1\|x	Cryo-EM structures of Lsg1-TAP pre-60S ribosomal particles	ELECTRON MICROSCOPY	3.1	121
183	6RZZ\|1\|x	Cryo-EM structures of Lsg1-TAP pre-60S ribosomal particles	ELECTRON MICROSCOPY	3.2	121
184	5T62\|1\|B	Nmd3 is a structural mimic of eIF5A, and activates the cpGTPase Lsg1 during 60S ribosome biogenesis: 60S-Nmd3-Tif6-Lsg1 Complex	ELECTRON MICROSCOPY	3.1	121
185	6N8O\|1\|B	Cryo-EM structure of Rpl10-inserted (RI) pre-60S ribosomal subunit	ELECTRON MICROSCOPY	3.5	121
186	6N8M\|1\|B	Cryo-EM structure of pre-Lsg1 (PL) pre-60S ribosomal subunit	ELECTRON MICROSCOPY	3.5	121
187	8HFR\|1\|2f	NPC-trapped pre-60S particle	ELECTRON MICROSCOPY	2.64	121
188	6YLH\|1\|3	Rix1-Rea1 pre-60S particle - full composite structure	ELECTRON MICROSCOPY	3.1	117
189	6YLG\|1\|3	Rix1-Rea1 pre-60S particle - 60S core, body 1 (rigid body refinement)	ELECTRON MICROSCOPY	3	117
190	7BTB\|1\|3	Cryo-EM structure of pre-60S ribosome from Saccharomyces cerevisiae rpl4delta63-87 strain at 3.22 Angstroms resolution(state R2)	ELECTRON MICROSCOPY	3.22	121
191	7UG6\|1\|3	Cryo-EM structure of pre-60S ribosomal subunit, unmethylated G2922	ELECTRON MICROSCOPY	2.9	121
192	6M62\|1\|3	Cryo-Em structure of eukaryotic pre-60S ribosome subunit from Saccharomyces cerevisiae rpf2 delta 255-344 strain, C4 state.	ELECTRON MICROSCOPY	3.2	121
193	7OH3\|1\|3	Nog1-TAP associated immature ribosomal particle population B from S. cerevisiae	ELECTRON MICROSCOPY	3.4	121
194	7OHQ\|1\|3	Nog1-TAP associated immature ribosomal particle population C from S. cerevisiae	ELECTRON MICROSCOPY	3.1	121
195	7V08\|1\|3	Nucleoplasmic pre-60S intermediate of the Nog2 containing pre-rotation state from a Spb1 D52A suppressor 3 strain	ELECTRON MICROSCOPY	2.36	121
196	7UQZ\|1\|3	Nucleoplasmic pre-60S intermediate of the Nog2 containing pre-rotation state from a SPB1 D52A strain	ELECTRON MICROSCOPY	2.44	121
197	7UOO\|1\|3	Nucleoplasmic pre-60S intermediate of the Nog2 containing pre-rotation state	ELECTRON MICROSCOPY	2.34	121
198	7UQB\|1\|3	Nucleoplasmic pre-60S intermediate of the Nog2 containing pre-rotation state from a SPB1-D52A strain with AlF4	ELECTRON MICROSCOPY	2.43	121
199	7BT6\|1\|3	Cryo-EM structure of pre-60S ribosome from Saccharomyces cerevisiae rpl4delta63-87 strain at 3.12 Angstroms resolution(state R1)	ELECTRON MICROSCOPY	3.12	121

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.

Coloring options: Nucleotide numbers

Equivalence class NR_3.5_18586.79 Current

Release history

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