Equivalence class NR_3.5_20965.2 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | #NTs | Date |
|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 7Z4D|1|A (rep) | sgRNA | synthetic construct | Crystal structure of SpCas9 bound to a 10 nucleotide complementary DNA substrate | X-ray diffraction | 3.1 | 75 | 2022-08-31 | |||
| 2 | 7Z4D|1|F | sgRNA | synthetic construct | Crystal structure of SpCas9 bound to a 10 nucleotide complementary DNA substrate | X-ray diffraction | 3.1 | 77 | 2022-08-31 | |||
| 3 | 7Z4L|1|A | sgRNA | synthetic construct | SpCas9 bound to 18-nucleotide complementary DNA substrate in the checkpoint state | Electron microscopy | 2.54 | 96 | 2022-08-31 | |||
| 4 | 7S4X|1|B | gRNA | synthetic construct | Cas9:gRNA in complex with 18-20MM DNA, 1 minute time-point, kinked active conformation | Electron microscopy | 2.76 | 98 | 2022-03-02 | |||
| 5 | 7Z4J|1|A | sgRNA | synthetic construct | SpCas9 bound to 18-nucleotide complementary DNA substrate in the catalytic state | Electron microscopy | 2.99 | 98 | 2022-08-31 | |||
| 6 | 8U3Y|1|B | RNA (98-MER) | synthetic construct | SpG Cas9 with NGG PAM DNA target | Electron microscopy | 3.1 | 98 | 2024-05-01 | |||
| 7 | 6O0X|1|B | single guide RNA | synthetic construct | Conformational states of Cas9-sgRNA-DNA ternary complex in the presence of magnesium | Electron microscopy | 3.28 | 98 | 2019-07-10 | |||
| 8 | 7Z4I|1|A | sgRNA | synthetic construct | SpCas9 bound to 16-nucleotide complementary DNA substrate | Electron microscopy | 3.12 | 96 | 2022-08-31 | |||
| 9 | 7S4V|1|B | gRNA | synthetic construct | Cas9 bound to 12-14MM DNA, 60 min time-point, kinked conformation | Electron microscopy | 3.28 | 98 | 2022-03-02 | |||
| 10 | 6O0Y|1|B | single guide RNA | synthetic construct | Conformational states of Cas9-sgRNA-DNA ternary complex in the presence of magnesium | Electron microscopy | 3.37 | 98 | 2019-07-10 | |||
| 11 | 6O0Z|1|B | single guide RNA | synthetic construct | Conformational states of Cas9-sgRNA-DNA ternary complex in the presence of magnesium | Electron microscopy | 3.3 | 96 | 2019-07-10 | |||
| 12 | 7Z4H|1|A | sgRNA | synthetic construct | SpCas9 bound to 14-nucleotide complementary DNA substrate | Electron microscopy | 3.49 | 92 | 2022-08-31 |
Release history
| Release | 3.333 | 3.334 | 3.335 | 3.336 | 3.337 | 3.338 | 3.339 | 3.340 | 3.341 | 3.342 | 3.343 | 3.344 | 3.345 | 3.346 | 3.347 | 3.348 | 3.349 | 3.350 | 3.351 | 3.352 | 3.353 | 3.354 | 3.355 | 3.356 | 3.357 | 3.358 | 3.359 | 3.360 | 3.361 | 3.362 | 3.363 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2024-05-01 | 2024-05-08 | 2024-05-15 | 2024-05-22 | 2024-05-29 | 2024-06-05 | 2024-06-12 | 2024-06-19 | 2024-06-26 | 2024-07-03 | 2024-07-10 | 2024-07-17 | 2024-07-25 | 2024-07-31 | 2024-08-07 | 2024-08-14 | 2024-08-21 | 2024-08-28 | 2024-09-04 | 2024-09-11 | 2024-09-18 | 2024-09-25 | 2024-10-02 | 2024-10-09 | 2024-10-16 | 2024-10-23 | 2024-10-30 | 2024-11-06 | 2024-11-13 | 2024-11-20 | 2024-11-27 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|
Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.
| #S | View | PDB | Title | Method | Resolution | #NTs |
|---|---|---|---|---|---|---|
| 1 | 7Z4L|1|A | SpCas9 bound to 18-nucleotide complementary DNA substrate in the checkpoint state | ELECTRON MICROSCOPY | 2.54 | 96 | |
| 2 | 7Z4I|1|A | SpCas9 bound to 16-nucleotide complementary DNA substrate | ELECTRON MICROSCOPY | 3.12 | 96 | |
| 3 | 7Z4H|1|A | SpCas9 bound to 14-nucleotide complementary DNA substrate | ELECTRON MICROSCOPY | 3.49 | 92 | |
| 4 | 7Z4D|1|A | Crystal structure of SpCas9 bound to a 10 nucleotide complementary DNA substrate | X-RAY DIFFRACTION | 3.1 | 75 | |
| 5 | 7Z4D|1|F | Crystal structure of SpCas9 bound to a 10 nucleotide complementary DNA substrate | X-RAY DIFFRACTION | 3.1 | 77 | |
| 6 | 7S4X|1|B | Cas9:gRNA in complex with 18-20MM DNA, 1 minute time-point, kinked active conformation | ELECTRON MICROSCOPY | 2.76 | 98 | |
| 7 | 7Z4J|1|A | SpCas9 bound to 18-nucleotide complementary DNA substrate in the catalytic state | ELECTRON MICROSCOPY | 2.99 | 98 | |
| 8 | 8U3Y|1|B | SpG Cas9 with NGG PAM DNA target | ELECTRON MICROSCOPY | 3.1 | 98 | |
| 9 | 6O0Y|1|B | Conformational states of Cas9-sgRNA-DNA ternary complex in the presence of magnesium | ELECTRON MICROSCOPY | 3.37 | 98 | |
| 10 | 6O0X|1|B | Conformational states of Cas9-sgRNA-DNA ternary complex in the presence of magnesium | ELECTRON MICROSCOPY | 3.28 | 98 | |
| 11 | 6O0Z|1|B | Conformational states of Cas9-sgRNA-DNA ternary complex in the presence of magnesium | ELECTRON MICROSCOPY | 3.3 | 96 | |
| 12 | 7S4V|1|B | Cas9 bound to 12-14MM DNA, 60 min time-point, kinked conformation | ELECTRON MICROSCOPY | 3.28 | 98 |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.
Coloring options: