Equivalence class NR_3.5_25344.1 Current
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | #NTs | Date |
|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 9HP9|1|C+ 9HP9|1|B (rep) | Trans-activating crRNA | Cas9 crRNA, Cas9 tracrRNA | synthetic construct | Synthetic | RF02348 | Cas9-Cas1-Cas2-Csn2 supercomplex with dsDNA in PAM-unbound conformation, Streptococcus thermophilus DGCC 7710 CRISPR3 system | Electron microscopy | 3.39 | 98 | 2026-02-18 |
| 2 | 9H2M|1|C+ 9H2M|1|B | Trans-activating crRNA | crRNA (26-MER), tracrRNA (65-MER) | synthetic construct | Synthetic | RF02348 | Cas9:crRNA:tracrRNA in complex with PAM-containing non-cognate DNA, PAM-unbound conformation, Streptococcus thermophilus DGCC 7710 CRISPR3 system | Electron microscopy | 3.06 | 91 | 2026-02-18 |
| 3 | 8PJ9|1|C+ 8PJ9|1|B+ 8PJ9|1|E | Trans-activating crRNA | crRNA, chain B, DNA oligoduplex, target strand, chains D,E, tracrRNA, chain C | Streptococcus thermophilus DGCC 7710 | Bacteria | RF02348 | Cas9 bound to cognate DNA, Streptococcus thermophilus DGCC 7710 CRISPR3 system | Electron microscopy | 3.24 | 120 | 2024-07-10 |
| 4 | 9H21|1|C+ 9H21|1|B | Trans-activating crRNA | crRNA (5'-R(P*GP*AP*AP*GP*AP*GP*GP*AP*CP*AP*GP*UP*UP*UP*UP*AP*GP*AP*GP*CP*UP*G)-3'), tracrRNA (62-MER) | synthetic construct | Synthetic | RF02348 | Cas9 in complex with tracrRNA and crRNA, Streptococcus thermophilus DGCC 7710 CRISPR3 system | Electron microscopy | 3.33 | 84 | 2026-02-18 |
| 5 | 9H2G|1|C+ 9H2G|1|B | Trans-activating crRNA | crRNA (26-MER), tracrRNA (65-MER) | synthetic construct | Synthetic | RF02348 | Cas9:crRNA:tracrRNA in complex with PAM-containing non-cognate DNA, PAM-bound conformation, Streptococcus thermophilus DGCC 7710 CRISPR3 system | Electron microscopy | 3.28 | 91 | 2026-02-18 |
Release history
| Release | 4.27 |
|---|---|
| Date | 2026-02-18 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|
Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.
| #S | View | PDB | Title | Method | Resolution | #NTs |
|---|---|---|---|---|---|---|
| 1 | 9HP9|1|C+ 9HP9|1|B | Cas9-Cas1-Cas2-Csn2 supercomplex with dsDNA in PAM-unbound conformation, Streptococcus thermophilus DGCC 7710 CRISPR3 system | ELECTRON MICROSCOPY | 3.39 | 98 | |
| 2 | 9H21|1|C+ 9H21|1|B | Cas9 in complex with tracrRNA and crRNA, Streptococcus thermophilus DGCC 7710 CRISPR3 system | ELECTRON MICROSCOPY | 3.33 | 84 | |
| 3 | 9H2G|1|C+ 9H2G|1|B | Cas9:crRNA:tracrRNA in complex with PAM-containing non-cognate DNA, PAM-bound conformation, Streptococcus thermophilus DGCC 7710 CRISPR3 system | ELECTRON MICROSCOPY | 3.28 | 91 | |
| 4 | 9H2M|1|C+ 9H2M|1|B | Cas9:crRNA:tracrRNA in complex with PAM-containing non-cognate DNA, PAM-unbound conformation, Streptococcus thermophilus DGCC 7710 CRISPR3 system | ELECTRON MICROSCOPY | 3.06 | 91 | |
| 5 | 8PJ9|1|C+ 8PJ9|1|B+ 8PJ9|1|E | Cas9 bound to cognate DNA, Streptococcus thermophilus DGCC 7710 CRISPR3 system | ELECTRON MICROSCOPY | 3.24 | 120 |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.
Coloring options: