Equivalence class NR_3.5_26052.5 Obsolete
# | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
---|---|---|---|---|---|---|---|---|---|---|
1 | 5NEW|1|H (rep) | RNA (5'-R(P*AP*AP*AP*AP*AP*A)-3') | Escherichia coli | RNA-RNA base stacking in the crystal structure of an Hfq6:RNA dimer | X-ray diffraction | 2.51 | 2017-10-04 | |||
2 | 6HYU|1|B | RNA (5'-R(*AP*AP*AP*AP*AP*A)-3') | synthetic construct | Crystal structure of DHX8 helicase bound to single stranded poly-adenine RNA | X-ray diffraction | 3.22 | 2019-08-28 | |||
3 | 6NUT|1|D | RNA (5'-R(P*AP*AP*AP*AP*AP*A)-3') | Homo sapiens | Ebola virus nucleoprotein - RNA complex | Electron microscopy | 3.1 | 2019-05-01 | |||
4 | 6H5Q|1|R | RNA (5'-R(*AP*AP*AP*AP*AP*A)-3') | synthetic construct | Cryo-EM structure of in vitro assembled Measles virus N into nucleocapsid-like particles (NCLPs) bound to polyA RNA hexamers. | Electron microscopy | 3.3 | 2019-03-13 |
Release history
Parents
Children
This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
---|---|---|---|---|---|
NR_3.5_26052.5 | NR_3.5_56199.1 | 3.98 | (1) 5NEW|1|H | (3) 6H5Q|1|R, 6HYU|1|B, 6NUT|1|D | (0) |
NR_3.5_26052.5 | NR_3.5_60226.1 | 3.98 | (1) 6H5Q|1|R | (3) 5NEW|1|H, 6HYU|1|B, 6NUT|1|D | (0) |
NR_3.5_26052.5 | NR_3.5_61996.1 | 3.98 | (1) 6NUT|1|D | (3) 5NEW|1|H, 6H5Q|1|R, 6HYU|1|B | (0) |
NR_3.5_26052.5 | NR_3.5_68616.1 | 3.98 | (1) 6HYU|1|B | (3) 5NEW|1|H, 6H5Q|1|R, 6NUT|1|D | (0) |
Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.
#S | View | PDB | Title | Method | Resolution | Length |
---|---|---|---|---|---|---|
1 | 6H5Q|1|R | Cryo-EM structure of in vitro assembled Measles virus N into nucleocapsid-like particles (NCLPs) bound to polyA RNA hexamers. | ELECTRON MICROSCOPY | 3.3 | 6 | |
2 | 6NUT|1|D | Ebola virus nucleoprotein - RNA complex | ELECTRON MICROSCOPY | 3.1 | 6 | |
3 | 6HYU|1|B | Crystal structure of DHX8 helicase bound to single stranded poly-adenine RNA | X-RAY DIFFRACTION | 3.22 | 6 | |
4 | 5NEW|1|H | RNA-RNA base stacking in the crystal structure of an Hfq6:RNA dimer | X-RAY DIFFRACTION | 2.51 | 6 |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.
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