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Equivalence class NR_3.5_29795.3 Current

#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodRes. Å#NTsDate
15DH6|1|A+ 5DH6|1|B (rep)Hammerhead ribozyme (type III)5'-R(*GP*GP*GP*CP*GP*U)-D(P*C)-R(P*UP*GP*GP*GP*CP*AP*GP*UP*AP*CP*CP*CP*A)-3', hammerhead ribozymesynthetic constructSyntheticRF00008Two divalent metal ions and conformational changes play roles in the hammerhead ribozyme cleavage reaction-G12A mutant in Mg2+X-ray diffraction2.78682015-10-07
25DI4|1|A+ 5DI4|1|BHammerhead ribozyme (type III)5'-R(*GP*GP*GP*CP*GP*U)-D(P*C)-R(P*UP*GP*GP*GP*CP*AP*GP*UP*AP*CP*CP*CP*A)-3', RNA (48-MER)synthetic constructSyntheticRF00008Two divalent metal ions and conformational changes play roles in the hammerhead ribozyme cleavage reaction-WT ribozyme in Mn2+ at low pHX-ray diffraction2.95682015-10-07
35DQK|1|A+ 5DQK|1|BHammerhead ribozyme (type III)RNA (48-MER), RNA (5'-R(*GP*GP*GP*CP*GP*U)-D(P*C)-R(P*UP*GP*GP*GP*CP*AP*GP*UP*AP*CP*CP*CP*A)-3')synthetic constructSyntheticRF00008Two divalent metal ions and conformational changes play roles in the hammerhead ribozyme cleavage reaction-WT ribozyme in Mg2+X-ray diffraction2.71682015-10-07
45EAO|1|A+ 5EAO|1|BHammerhead ribozyme (type III)RNA (48-MER), RNA (5'-R(*GP*GP*GP*CP*GP*U*(CVC)*UP*GP*GP*GP*CP*AP*GP*UP*AP*CP*CP*CP*A)-3')synthetic constructSyntheticRF00008Two active site divalent ion in the crystal structure of the hammerhead ribozyme bound to a transition state analog-Mg2+X-ray diffraction2.99682016-02-24
55DH7|1|A+ 5DH7|1|BHammerhead ribozyme (type III)5'-R(*GP*GP*GP*CP*GP*UP*DC*UP*GP*GP*GP*CP*AP*GP*UP*AP*CP*CP*CP*A)-3', RNA (48-MER)synthetic constructSyntheticRF00008Two divalent metal ions and conformational changes play roles in the hammerhead ribozyme cleavage reaction-G12A mutant in Mn2+X-ray diffraction3.06682015-10-07
65DI2|1|A+ 5DI2|1|BHammerhead ribozyme (type III)5'-R(*GP*GP*GP*CP*GP*U)-D(P*C)-R(P*UP*GP*GP*GP*CP*AP*GP*UP*AP*CP*CP*CP*A)-3', RNA (48-MER)synthetic constructSyntheticRF00008Two divalent metal ions and conformational changes play roles in the hammerhead ribozyme cleavage reaction-WT ribozyme in Mn2+ at high pHX-ray diffraction2.99682015-10-07
75DH8|1|A+ 5DH8|1|BHammerhead ribozyme (type III)5'-R(*GP*GP*GP*CP*GP*U)-D(P*C)-R(P*UP*GP*GP*GP*CP*AP*GP*UP*AP*CP*CP*CP*A)-3', RNA (48-MER)synthetic constructSyntheticRF00008Two divalent metal ions and conformational changes play roles in the hammerhead ribozyme cleavage reaction- G12A mutant in Zn2+X-ray diffraction3.3682015-10-07
85EAQ|1|A+ 5EAQ|1|BHammerhead ribozyme (type III)RNA (48-MER), RNA (5'-R(*GP*GP*GP*CP*GP*U*(CVC)*UP*GP*GP*GP*CP*AP*GP*UP*AP*CP*CP*CP*A)-3')synthetic constructSyntheticRF00008Two active site divalent ion in the crystal structure of the hammerhead ribozyme bound to a transition state analog-Mn2+X-ray diffraction3.2682016-02-24

Release history

Release4.0
Date2025-08-13

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child

Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.

#SViewPDBTitleMethodResolution#NTs
15DH8|1|A+ 5DH8|1|BTwo divalent metal ions and conformational changes play roles in the hammerhead ribozyme cleavage reaction- G12A mutant in Zn2+X-RAY DIFFRACTION3.368
25DH6|1|A+ 5DH6|1|BTwo divalent metal ions and conformational changes play roles in the hammerhead ribozyme cleavage reaction-G12A mutant in Mg2+X-RAY DIFFRACTION2.7868
35DH7|1|A+ 5DH7|1|BTwo divalent metal ions and conformational changes play roles in the hammerhead ribozyme cleavage reaction-G12A mutant in Mn2+X-RAY DIFFRACTION3.0668
45DI2|1|A+ 5DI2|1|BTwo divalent metal ions and conformational changes play roles in the hammerhead ribozyme cleavage reaction-WT ribozyme in Mn2+ at high pHX-RAY DIFFRACTION2.9968
55DQK|1|A+ 5DQK|1|BTwo divalent metal ions and conformational changes play roles in the hammerhead ribozyme cleavage reaction-WT ribozyme in Mg2+X-RAY DIFFRACTION2.7168
65DI4|1|A+ 5DI4|1|BTwo divalent metal ions and conformational changes play roles in the hammerhead ribozyme cleavage reaction-WT ribozyme in Mn2+ at low pHX-RAY DIFFRACTION2.9568
75EAO|1|A+ 5EAO|1|BTwo active site divalent ion in the crystal structure of the hammerhead ribozyme bound to a transition state analog-Mg2+X-RAY DIFFRACTION2.9968
85EAQ|1|A+ 5EAQ|1|BTwo active site divalent ion in the crystal structure of the hammerhead ribozyme bound to a transition state analog-Mn2+X-RAY DIFFRACTION3.268

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.


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