Equivalence class NR_3.5_32313.1 Current
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | #NTs | Date |
|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 9UCX|1|B+ 9UCX|1|C+ 9UCX|1|D+ 9UCX|1|E (rep) | 28S DNA bottom strand, 3' side, 28S DNA bottom strand, 5' side (priming strand), 28S DNA top strand, R2Tg 3'UTR RNA | Taeniopygia guttata | Cryo-EM structure of R2Tg bound to template RNA and target DNA in the target-primed reverse transcription initiation state (state 1) | Electron microscopy | 2.19 | 192 | 2026-10-14 | |||
| 2 | 9UCZ|1|B+ 9UCZ|1|C+ 9UCZ|1|D+ 9UCZ|1|E | 28S DNA bottom strand, 3' side, 28S DNA bottom strand, 5' side (priming strand), 28S DNA top strand, R2Tg 3'UTR RNA | Taeniopygia guttata | Cryo-EM structure of the R2Tg retrotransposon in complex with R2RNA and rDNA in the initiating target-primed reverse transcription state (ZF3/2 disordered) | Electron microscopy | 2.61 | 192 | 2026-10-14 | |||
| 3 | 9UCY|1|B+ 9UCY|1|E | 28S DNA bottom strand, 5' side (priming strand), R2Tg 3'UTR RNA | Taeniopygia guttata | Cryo-EM structure of the R2Tg retrotransposon in complex with R2RNA and rDNA in the initiating target-primed reverse transcription state (top strand cleaved) | Electron microscopy | 2.54 | 88 | 2026-10-14 |
Release history
| Release | 4.61 |
|---|---|
| Date | 2026-10-14 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
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Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
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Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.
| #S | View | PDB | Title | Method | Resolution | #NTs |
|---|---|---|---|---|---|---|
| 1 | 9UCX|1|B+ 9UCX|1|C+ 9UCX|1|D+ 9UCX|1|E | Cryo-EM structure of R2Tg bound to template RNA and target DNA in the target-primed reverse transcription initiation state (state 1) | ELECTRON MICROSCOPY | 2.19 | 192 | |
| 2 | 9UCZ|1|B+ 9UCZ|1|C+ 9UCZ|1|D+ 9UCZ|1|E | Cryo-EM structure of the R2Tg retrotransposon in complex with R2RNA and rDNA in the initiating target-primed reverse transcription state (ZF3/2 disordered) | ELECTRON MICROSCOPY | 2.61 | 192 | |
| 3 | 9UCY|1|B+ 9UCY|1|E | Cryo-EM structure of the R2Tg retrotransposon in complex with R2RNA and rDNA in the initiating target-primed reverse transcription state (top strand cleaved) | ELECTRON MICROSCOPY | 2.54 | 88 |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.
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