Equivalence class NR_3.5_34359.11 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | #NTs | Date |
|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 2NVQ|1|R (rep) | 5'-R(*AP*UP*CP*GP*AP*GP*AP*GP*GP*A)-3' | synthetic construct | RNA Polymerase II Elongation Complex in 150 mM Mg+2 with 2'dUTP | X-ray diffraction | 2.9 | 10 | 2006-12-12 | |||
| 2 | 6UPZ|1|R | RNA | synthetic construct | RNA polymerase II elongation complex with 5-guanidinohydantoin lesion in state 3 | X-ray diffraction | 3.1 | 10 | 2020-06-10 | |||
| 3 | 2E2I|1|R | 5'-R(*AP*UP*CP*GP*AP*GP*AP*GP*GP*A)-3' | RNA polymerase II elongation complex in 5 mM Mg+2 with 2'-dGTP | X-ray diffraction | 3.41 | 10 | 2006-12-19 | ||||
| 4 | 7KEE|1|R | RNA | synthetic construct | RNA polymerase II elongation complex with unnatural base dTPT3, rNaMTP bound to E-site | X-ray diffraction | 3.45 | 10 | 2021-06-23 | |||
| 5 | 1R9T|1|R | RNA strand | RNA POLYMERASE II STRAND SEPARATED ELONGATION COMPLEX, MISMATCHED NUCLEOTIDE | X-ray diffraction | 3.5 | 10 | 2004-11-16 | ||||
| 6 | 2YU9|1|R | 5'-R(*AP*UP*CP*GP*AP*GP*AP*GP*GP*A)-3' | synthetic construct | RNA polymerase II elongation complex in 150 mm MG+2 with UTP | X-ray diffraction | 3.4 | 10 | 2007-04-24 | |||
| 7 | 8B3D|1|P | RNA | Homo sapiens | Structure of the Pol II-TCR-ELOF1 complex. | Electron microscopy | 2.6 | 10 | 2023-09-27 | |||
| 8 | 7OOB|1|P | RNA | Homo sapiens | Pol II-CSB-CSA-DDB1-UVSSA-ADPBeF3 (Structure2) | Electron microscopy | 2.7 | 10 | 2021-10-13 | |||
| 9 | 7OO3|1|P | RNA | Homo sapiens | Pol II-CSB-CSA-DDB1-UVSSA (Structure1) | Electron microscopy | 2.8 | 10 | 2021-10-06 | |||
| 10 | 8B3F|1|P | RNA | Homo sapiens | Pol II-CSB-CSA-DDB1-ELOF1 | Electron microscopy | 3.1 | 10 | 2023-09-27 | |||
| 11 | 8TVY|1|R | RNA | synthetic construct | Cryo-EM structure of CPD lesion containing RNA Polymerase II elongation complex with Rad26 and Elf1 (closed state) | Electron microscopy | 3.1 | 10 | 2024-01-24 | |||
| 12 | 8TUG|1|R | RNA | synthetic construct | Cryo-EM structure of CPD-stalled Pol II in complex with Rad26 (engaged state) | Electron microscopy | 3.5 | 10 | 2024-01-24 | |||
| 13 | 7Z2Z|1|R | RNA | Saccharomyces cerevisiae S288C | Structure of yeast RNA Polymerase III-DNA-Ty1 integrase complex (Pol III-DNA-IN1) at 3.1 A | Electron microscopy | 3.07 | 3 | 2023-04-05 |
Release history
| Release | 3.332 | 3.333 | 3.334 | 3.335 | 3.336 | 3.337 | 3.338 | 3.339 | 3.340 | 3.341 | 3.342 | 3.343 | 3.344 | 3.345 | 3.346 | 3.347 | 3.348 | 3.349 | 3.350 | 3.351 | 3.352 | 3.353 | 3.354 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2024-04-24 | 2024-05-01 | 2024-05-08 | 2024-05-15 | 2024-05-22 | 2024-05-29 | 2024-06-05 | 2024-06-12 | 2024-06-19 | 2024-06-26 | 2024-07-03 | 2024-07-10 | 2024-07-17 | 2024-07-25 | 2024-07-31 | 2024-08-07 | 2024-08-14 | 2024-08-21 | 2024-08-28 | 2024-09-04 | 2024-09-11 | 2024-09-18 | 2024-09-25 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
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Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
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Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.
| #S | View | PDB | Title | Method | Resolution | #NTs |
|---|---|---|---|---|---|---|
| 1 | 7Z2Z|1|R | Structure of yeast RNA Polymerase III-DNA-Ty1 integrase complex (Pol III-DNA-IN1) at 3.1 A | ELECTRON MICROSCOPY | 3.07 | 3 | |
| 2 | 2NVQ|1|R | RNA Polymerase II Elongation Complex in 150 mM Mg+2 with 2'dUTP | X-RAY DIFFRACTION | 2.9 | 10 | |
| 3 | 7OO3|1|P | Pol II-CSB-CSA-DDB1-UVSSA (Structure1) | ELECTRON MICROSCOPY | 2.8 | 10 | |
| 4 | 7OOB|1|P | Pol II-CSB-CSA-DDB1-UVSSA-ADPBeF3 (Structure2) | ELECTRON MICROSCOPY | 2.7 | 10 | |
| 5 | 8B3F|1|P | Pol II-CSB-CSA-DDB1-ELOF1 | ELECTRON MICROSCOPY | 3.1 | 10 | |
| 6 | 8B3D|1|P | Structure of the Pol II-TCR-ELOF1 complex. | ELECTRON MICROSCOPY | 2.6 | 10 | |
| 7 | 8TVY|1|R | Cryo-EM structure of CPD lesion containing RNA Polymerase II elongation complex with Rad26 and Elf1 (closed state) | ELECTRON MICROSCOPY | 3.1 | 10 | |
| 8 | 8TUG|1|R | Cryo-EM structure of CPD-stalled Pol II in complex with Rad26 (engaged state) | ELECTRON MICROSCOPY | 3.5 | 10 | |
| 9 | 6UPZ|1|R | RNA polymerase II elongation complex with 5-guanidinohydantoin lesion in state 3 | X-RAY DIFFRACTION | 3.1 | 10 | |
| 10 | 7KEE|1|R | RNA polymerase II elongation complex with unnatural base dTPT3, rNaMTP bound to E-site | X-RAY DIFFRACTION | 3.45 | 10 | |
| 11 | 2E2I|1|R | RNA polymerase II elongation complex in 5 mM Mg+2 with 2'-dGTP | X-RAY DIFFRACTION | 3.41 | 10 | |
| 12 | 2YU9|1|R | RNA polymerase II elongation complex in 150 mm MG+2 with UTP | X-RAY DIFFRACTION | 3.4 | 10 | |
| 13 | 1R9T|1|R | RNA POLYMERASE II STRAND SEPARATED ELONGATION COMPLEX, MISMATCHED NUCLEOTIDE | X-RAY DIFFRACTION | 3.5 | 10 |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.
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