Equivalence class NR_3.5_40313.3 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 7ZHG|1|2 (rep) | Small subunit ribosomal RNA | mRNA, rRNA 16S | Pyrococcus abyssi GE5 | Archaea | RF01959 | High-resolution cryo-EM structure of Pyrococcus abyssi 30S ribosomal subunit bound to mRNA and initiator tRNA anticodon stem-loop | Electron microscopy | 2.25 | 2022-06-29 |
| 2 | 6TH6|1|Aa | Small subunit ribosomal RNA | 16S ribosomal RNA | Thermococcus kodakarensis | Archaea | RF01959 | Cryo-EM Structure of T. kodakarensis 70S ribosome | Electron microscopy | 2.55 | 2020-07-29 |
| 3 | 7ZAI|1|2 | Small subunit ribosomal RNA | 16S rRNA, mRNA | Pyrococcus abyssi GE5 | Archaea | RF01959 | Cryo-EM structure of a Pyrococcus abyssi 30S bound to Met-initiator tRNA, mRNA and aIF1A. | Electron microscopy | 2.6 | 2022-07-13 |
| 4 | 6SKG|1|Aa | Small subunit ribosomal RNA | 16S ribosomal RNA | Thermococcus kodakarensis | Archaea | RF01959 | Cryo-EM Structure of T. kodakarensis 70S ribosome in TkNat10 deleted strain | Electron microscopy | 2.65 | 2020-07-29 |
| 5 | 6TMF|1|A | Small subunit ribosomal RNA | 16S ribosomal RNA | Thermococcus celer | Archaea | RF01959 | Structure of an archaeal ABCE1-bound ribosomal post-splitting complex | Electron microscopy | 2.8 | 2020-02-12 |
| 6 | 6SKF|1|Aa | Small subunit ribosomal RNA | 16S rRNA | Thermococcus kodakarensis | Archaea | RF01959 | Cryo-EM Structure of T. kodakarensis 70S ribosome | Electron microscopy | 2.95 | 2020-07-29 |
| 7 | 6SWC|1|2 | Small subunit ribosomal RNA | 16S ribosomal rRNA, mRNA | Pyrococcus abyssi | Archaea | RF01959 | IC2B model of cryo-EM structure of a full archaeal ribosomal translation initiation complex devoid of aIF1 in P. abyssi | Electron microscopy | 3.3 | 2020-02-19 |
Parents
Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.
| #S | View | PDB | Title | Method | Resolution | Length |
|---|---|---|---|---|---|---|
| 1 | 7ZHG|1|2 | High-resolution cryo-EM structure of Pyrococcus abyssi 30S ribosomal subunit bound to mRNA and initiator tRNA anticodon stem-loop | ELECTRON MICROSCOPY | 2.25 | 1429 | |
| 2 | 7ZAI|1|2 | Cryo-EM structure of a Pyrococcus abyssi 30S bound to Met-initiator tRNA, mRNA and aIF1A. | ELECTRON MICROSCOPY | 2.6 | 1429 | |
| 3 | 6SWC|1|2 | IC2B model of cryo-EM structure of a full archaeal ribosomal translation initiation complex devoid of aIF1 in P. abyssi | ELECTRON MICROSCOPY | 3.3 | 1454 | |
| 4 | 6SKF|1|Aa | Cryo-EM Structure of T. kodakarensis 70S ribosome | ELECTRON MICROSCOPY | 2.95 | 1385 | |
| 5 | 6TH6|1|Aa | Cryo-EM Structure of T. kodakarensis 70S ribosome | ELECTRON MICROSCOPY | 2.55 | 1439 | |
| 6 | 6SKG|1|Aa | Cryo-EM Structure of T. kodakarensis 70S ribosome in TkNat10 deleted strain | ELECTRON MICROSCOPY | 2.65 | 1399 | |
| 7 | 6TMF|1|A | Structure of an archaeal ABCE1-bound ribosomal post-splitting complex | ELECTRON MICROSCOPY | 2.8 | 1485 |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.
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