Equivalence class NR_3.5_41135.2 Current
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | #NTs | Date |
|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 9OLF|1|Ax (rep) | mRNA, P/P-tRNA | Homo sapiens | Membrane-associated human mitoribosome in complex with TACO1 | Electron microscopy | 2.46 | 71 | 2026-02-18 | |||
| 2 | 9OJM|1|5 | mRNA (5'-R(P*AP*UP*GP*U)-3'), RNA (71-MER) | Homo sapiens | Human mitochondrial 28S PIC with tRNA and mtIF2 | Electron microscopy | 2.5 | 71 | 2026-03-18 | |||
| 3 | 9PGL|1|Ax | mRNA, P/P-tRNA | Homo sapiens | In situ structure of the human mitoribosome in the A-P state with TACO1 | Electron microscopy | 2.9 | 71 | 2026-02-18 | |||
| 4 | 9PGF|1|Ax | mRNA, P/P-tRNA | Homo sapiens | In situ structure of the human mitoribosome in the P state | Electron microscopy | 2.93 | 71 | 2026-02-18 | |||
| 5 | 9UWH|1|Ax | mRNA, P/P-tRNA | Homo sapiens | human mitoribosome trapped by retapamulin | Electron microscopy | 3 | 65 | 2025-10-29 | |||
| 6 | 9PG8|1|Ax | mRNA, P/P-tRNA | Homo sapiens | In situ structure of the human mitoribosome in the P-E state | Electron microscopy | 3.06 | 71 | 2026-02-18 | |||
| 7 | 9PGI|1|Ax | mRNA, P/P-tRNA | Homo sapiens | In situ structure of the human mitoribosome in the A-P-E state with TACO1 | Electron microscopy | 3.02 | 71 | 2026-02-18 | |||
| 8 | 6YDP|1|AV | fMet-tRNAMet (P site), mRNA | Homo sapiens | 55S mammalian mitochondrial ribosome with mtEFG1 and P site fMet-tRNAMet (POST) | Electron microscopy | 3 | 71 | 2020-07-15 | |||
| 9 | 9PS7|1|Ax | mRNA, P/P-tRNA | Homo sapiens | In situ structure of the human mitoribosome in the A/T-P-E state from TACO1-knockout cells | Electron microscopy | 3.08 | 71 | 2026-02-18 | |||
| 10 | 9PGM|1|Ax | mRNA, P/P-tRNA | Homo sapiens | In situ structure of the human mitoribosome in the P-E state from TACO1-knockout cells | Electron microscopy | 3.18 | 71 | 2026-02-18 | |||
| 11 | 9PSI|1|Ax | mRNA, P/P-tRNA | Homo sapiens | In situ structure of the human mitoribosome in the A-P-E state from TACO1-knockout cells | Electron microscopy | 3.12 | 71 | 2026-02-18 | |||
| 12 | 9PRX|1|Ax | mRNA, P/P-tRNA | Homo sapiens | In situ structure of the human mitoribosome in the A-P state from TACO1-knockout cells | Electron microscopy | 3.23 | 71 | 2026-02-18 | |||
| 13 | 9PRQ|1|Ax | mRNA, P/P-tRNA | Homo sapiens | In situ structure of human mitoribosome in the A/T-P state from TACO1-knockout cells | Electron microscopy | 3.34 | 71 | 2026-02-18 | |||
| 14 | 9PRD|1|Ax | mRNA, P/P-tRNA | Homo sapiens | In situ structure of the human mitoribosome in the P state from TACO1-knockout cells | Electron microscopy | 3.31 | 71 | 2026-02-18 | |||
| 15 | 8OIR|1|AG | mRNA, P-site Met-tRNA(Met) | Homo sapiens | 55S human mitochondrial ribosome with mtRF1 and P-site tRNA | Electron microscopy | 3.1 | 71 | 2023-06-14 | |||
| 16 | 9HFO|1|5 | fMet-tRNAMet, mRNA, start codon | Homo sapiens | Translation-initiation state of human mitochondrial ribosome small subunit (State G) | Electron microscopy | 3.1 | 66 | 2025-04-23 | |||
| 17 | 7NQH|1|AV | mRNA, tRNAMet | Homo sapiens | 55S mammalian mitochondrial ribosome with mtRF1a and P-site tRNAMet | Electron microscopy | 3.5 | 71 | 2021-05-05 | |||
| 18 | 7NQL|1|AV | fMet-tRNAMet (P site), mRNA | Homo sapiens | 55S mammalian mitochondrial ribosome with ICT1 and P site tRNAMet | Electron microscopy | 3.4 | 71 | 2021-05-05 | |||
| 19 | 7PO2|1|5 | fMet-tRNAMet, mRNA | Homo sapiens | Initiation complex of human mitochondrial ribosome small subunit with IF2, fMet-tRNAMet and mRNA | Electron microscopy | 3.09 | 71 | 2022-06-15 | |||
| 20 | 6GAZ|1|AV | MT-CO3 mRNA, mitochondrial, P-site fMet-tRNAMet, mitochondrial | Homo sapiens | Unique features of mammalian mitochondrial translation initiation revealed by cryo-EM. This file contains the 28S ribosomal subunit. | Electron microscopy | 3.1 | 71 | 2018-08-08 | |||
| 21 | 8OIT|1|AG | P-site Met-tRNA(Met) | Homo sapiens | 39S human mitochondrial large ribosomal subunit with mtRF1 and P-site tRNA | Electron microscopy | 2.9 | 71 | 2023-06-14 | |||
| 22 | 8OIQ|1|AG | P-site Met-tRNA(fMet) | Homo sapiens | 39S mammalian mitochondrial large ribosomal subunit with mtRF1 and P-site tRNA | Electron microscopy | 3.5 | 71 | 2023-06-14 | |||
| 23 | 6GAW|1|AV | MT-CO3 mRNA, mitochondrial, P-site fMet-tRNAMet, mitochondrial | Homo sapiens | Unique features of mammalian mitochondrial translation initiation revealed by cryo-EM. This file contains the complete 55S ribosome. | Electron microscopy | 3.2 | 71 | 2018-08-22 | |||
| 24 | 8QRN|1|5 | fMet-tRNAMet | Homo sapiens | mt-SSU in GTPBP8 knock-out cells, state 4 | Electron microscopy | 2.98 | 71 | 2024-06-26 | |||
| 25 | 6GB2|1|AV | P-site fMet-tRNAMet, mitochondrial | Homo sapiens | Unique features of mammalian mitochondrial translation initiation revealed by cryo-EM. This file contains the 39S ribosomal subunit. | Electron microscopy | 3.2 | 71 | 2018-08-08 | |||
| 26 | 8OIS|1|AG | mRNA, P-site Met-tRNA(Met) | Homo sapiens | 28S human mitochondrial small ribosomal subunit with mtRF1 and P-site tRNA | Electron microscopy | 3 | 71 | 2023-06-14 |
Release history
| Release | 4.31 |
|---|---|
| Date | 2026-03-18 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|
Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.
| #S | View | PDB | Title | Method | Resolution | #NTs |
|---|---|---|---|---|---|---|
| 1 | 8OIS|1|AG | 28S human mitochondrial small ribosomal subunit with mtRF1 and P-site tRNA | ELECTRON MICROSCOPY | 3 | 71 | |
| 2 | 8OIR|1|AG | 55S human mitochondrial ribosome with mtRF1 and P-site tRNA | ELECTRON MICROSCOPY | 3.1 | 71 | |
| 3 | 8OIT|1|AG | 39S human mitochondrial large ribosomal subunit with mtRF1 and P-site tRNA | ELECTRON MICROSCOPY | 2.9 | 71 | |
| 4 | 8OIQ|1|AG | 39S mammalian mitochondrial large ribosomal subunit with mtRF1 and P-site tRNA | ELECTRON MICROSCOPY | 3.5 | 71 | |
| 5 | 9UWH|1|Ax | human mitoribosome trapped by retapamulin | ELECTRON MICROSCOPY | 3 | 65 | |
| 6 | 9PRD|1|Ax | In situ structure of the human mitoribosome in the P state from TACO1-knockout cells | ELECTRON MICROSCOPY | 3.31 | 71 | |
| 7 | 9PGM|1|Ax | In situ structure of the human mitoribosome in the P-E state from TACO1-knockout cells | ELECTRON MICROSCOPY | 3.18 | 71 | |
| 8 | 9PRQ|1|Ax | In situ structure of human mitoribosome in the A/T-P state from TACO1-knockout cells | ELECTRON MICROSCOPY | 3.34 | 71 | |
| 9 | 9PSI|1|Ax | In situ structure of the human mitoribosome in the A-P-E state from TACO1-knockout cells | ELECTRON MICROSCOPY | 3.12 | 71 | |
| 10 | 9PS7|1|Ax | In situ structure of the human mitoribosome in the A/T-P-E state from TACO1-knockout cells | ELECTRON MICROSCOPY | 3.08 | 71 | |
| 11 | 9PRX|1|Ax | In situ structure of the human mitoribosome in the A-P state from TACO1-knockout cells | ELECTRON MICROSCOPY | 3.23 | 71 | |
| 12 | 9OLF|1|Ax | Membrane-associated human mitoribosome in complex with TACO1 | ELECTRON MICROSCOPY | 2.46 | 71 | |
| 13 | 9PGF|1|Ax | In situ structure of the human mitoribosome in the P state | ELECTRON MICROSCOPY | 2.93 | 71 | |
| 14 | 9PG8|1|Ax | In situ structure of the human mitoribosome in the P-E state | ELECTRON MICROSCOPY | 3.06 | 71 | |
| 15 | 9PGI|1|Ax | In situ structure of the human mitoribosome in the A-P-E state with TACO1 | ELECTRON MICROSCOPY | 3.02 | 71 | |
| 16 | 9PGL|1|Ax | In situ structure of the human mitoribosome in the A-P state with TACO1 | ELECTRON MICROSCOPY | 2.9 | 71 | |
| 17 | 6YDP|1|AV | 55S mammalian mitochondrial ribosome with mtEFG1 and P site fMet-tRNAMet (POST) | ELECTRON MICROSCOPY | 3 | 71 | |
| 18 | 7NQL|1|AV | 55S mammalian mitochondrial ribosome with ICT1 and P site tRNAMet | ELECTRON MICROSCOPY | 3.4 | 71 | |
| 19 | 7NQH|1|AV | 55S mammalian mitochondrial ribosome with mtRF1a and P-site tRNAMet | ELECTRON MICROSCOPY | 3.5 | 71 | |
| 20 | 9HFO|1|5 | Translation-initiation state of human mitochondrial ribosome small subunit (State G) | ELECTRON MICROSCOPY | 3.1 | 66 | |
| 21 | 7PO2|1|5 | Initiation complex of human mitochondrial ribosome small subunit with IF2, fMet-tRNAMet and mRNA | ELECTRON MICROSCOPY | 3.09 | 71 | |
| 22 | 8QRN|1|5 | mt-SSU in GTPBP8 knock-out cells, state 4 | ELECTRON MICROSCOPY | 2.98 | 71 | |
| 23 | 9OJM|1|5 | Human mitochondrial 28S PIC with tRNA and mtIF2 | ELECTRON MICROSCOPY | 2.5 | 71 | |
| 24 | 6GAW|1|AV | Unique features of mammalian mitochondrial translation initiation revealed by cryo-EM. This file contains the complete 55S ribosome. | ELECTRON MICROSCOPY | 3.2 | 71 | |
| 25 | 6GAZ|1|AV | Unique features of mammalian mitochondrial translation initiation revealed by cryo-EM. This file contains the 28S ribosomal subunit. | ELECTRON MICROSCOPY | 3.1 | 71 | |
| 26 | 6GB2|1|AV | Unique features of mammalian mitochondrial translation initiation revealed by cryo-EM. This file contains the 39S ribosomal subunit. | ELECTRON MICROSCOPY | 3.2 | 71 |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.
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